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Ootsuchi H, Nakajima M, Hatada Y. Recovery of Clostridium from soil using Heat Shock enrichment technique and Agar Deeps. J Microbiol Methods 2025; 232-234:107133. [PMID: 40250769 DOI: 10.1016/j.mimet.2025.107133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2025] [Revised: 04/14/2025] [Accepted: 04/15/2025] [Indexed: 04/20/2025]
Abstract
Some members of the genus Clostridium can produce butanol and hydrogen from renewable substrates contributing to biofuel production. In recent years, there has been a growing social demand for its utilization to realize a sustainable society. Clostridium is also attracting attention in the medical field, and research is being conducted to use it as a prodrug treatment and an intestinal bacterium to reduce cancer. Clostridium is a very attractive research subject. However, because Clostridium is an obligatory anaerobe, it requires expensive equipment not used to culture aerobic bacteria, making it difficult to start research on it. In this study, we developed an inexpensive and highly selective method for isolating Clostridium that does not require special equipment. This method combines two methods to increase the selectivity of Clostridium: the heat shock enrichment method, which selects non-spore-forming bacteria, and the agar deep method, which selects anaerobic bacteria based on their oxygen requirement. Using the isolation method developed in this study, we succeeded in isolating 11 new species of Clostridium. In total, 17 species of 3 genera were obtained from soil samples (0.2 g each) from only eight locations. Surprisingly, this represents 7.5 % of Clostridium reported to date.
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Affiliation(s)
- Hironobu Ootsuchi
- Saitama Institute of Technology, 1690 Fusaiji, Fukaya, Saitama, Japan.
| | - Misaki Nakajima
- Saitama Institute of Technology, 1690 Fusaiji, Fukaya, Saitama, Japan
| | - Yuji Hatada
- Saitama Institute of Technology, 1690 Fusaiji, Fukaya, Saitama, Japan
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Okonkwo CC, Duduyemi A, Ujor VC, Qureshi N, Ezeji TC. Developing a separation system to enable real-time recovery of acetone-butanol during fermentation. Appl Microbiol Biotechnol 2024; 108:508. [PMID: 39520570 PMCID: PMC11550279 DOI: 10.1007/s00253-024-13340-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 10/15/2024] [Accepted: 10/22/2024] [Indexed: 11/16/2024]
Abstract
Methods such as gas stripping and vacuum-assisted gas stripping (VAGS) result in significant removal of water from the bioreactor, thus requiring continuous water replenishment in the bioreactor. In this study, we developed a hydrophobic stainless steel meshes capable of selectively recovering concentrated ABE stream from the bioreactor during VAGS. Three stainless steel meshes with pore sizes of 180 µm, 300 µm, and 425 µm were made hydrophobic and oleophilic with zinc oxide (ZnO) and polydimethylsiloxane (PDMS). Butanol concentrations in the model solutions range from 3 to 10 g/L which mimic concentrations typically produced during batch ABE fermentation. The meshes were integrated in a 5-L bioreactor containing 2.5 L of operational ABE model solution followed by the evaluation of selective extraction of ABE from both cell-free and Clostridium beijerinckii-rich ABE model solutions. The results show that the 180-µm ZnO/PDMS-coated mesh retained 54-64% more water in the bioreactor without C. beijerinckii cells and 61-65% more water with cells compared to the uncoated mesh. Furthermore, the butanol concentration of condensates recovered with 180-µm ZnO-PDMS-coated mesh was up to 10.8-fold greater than that of uncoated counterpart. Our data demonstrate that the developed ZnO-PDMS mesh can recover high concentrations of ABE while selectively retaining water in the bioreactor. Additionally, this technology demonstrates the potential for real-time ABE recovery during the fermentation of lignocellulosic and colloidal materials, without the concern of clogging the separation system. KEY POINTS: • Hydrophobic mesh enhanced water retention in the bioreactor by up to 1.65-fold. • Butanol concentration in the collected condensate was increased by up to 10.8-fold. • Hydrophobic mesh is compatible with fermentation of lignocellulose.
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Affiliation(s)
- Christopher Chukwudi Okonkwo
- Department of Animal Science, College of Food Agricultural and Environmental Sciences, The Ohio State University, Wooster, OH, 44691, USA
- Biotechnology Program, College of Science, The Roux Institute, Northeastern University, 100 Fore Street, Portland, ME, 04103, USA
- Department of Chemistry and Chemical Biology, College of Science, Northeastern University, 360 Huntington Avenue, Boston, MA, 02115, USA
| | - Ademola Duduyemi
- Department of Animal Science, College of Food Agricultural and Environmental Sciences, The Ohio State University, Wooster, OH, 44691, USA
| | - Victor Chinomso Ujor
- Department of Food Science, University of Wisconsin-Madison, 1605 Linden Drive, Maddison, WI, 53706, USA
| | - Nasib Qureshi
- United States Department of Agriculture (USDA), Agricultural Research Service (ARS), National Center for Agricultural Utilization Research (NCAUR), Bioenergy Research Unit, 1815 N University Street, Peoria, IL, 61604, USA
| | - Thaddeus Chukwuemeka Ezeji
- Department of Animal Science, College of Food Agricultural and Environmental Sciences, The Ohio State University, Wooster, OH, 44691, USA.
- Department of Food Agricultural and Biological Engineering, College of Food Agricultural and Environmental Sciences, The Ohio State University, 1680 Madison Avenue, Wooster, OH, 44691, USA.
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In-situ recovery of butanol from ABE fermentation solution by hydrophobic ionic liquid perstraction in tubular membranes assisted with vacuum. Sep Purif Technol 2023. [DOI: 10.1016/j.seppur.2023.123630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2023]
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ACETONE-BUTYL FERMENTATION PECULIARITIES OF THE BUTANOL STRAINS -PRODUCER. BIOTECHNOLOGIA ACTA 2022. [DOI: 10.15407/biotech15.01.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The aim of this review was to generalize and analyze the features of acetone-butyl fermentation as a type of butyric acid fermentation in the process of obtaining butanol as an alternative biofuel. Methods. The methods of analysis and generalization of analytical information and literature sources were used in the review. The results were obtained using the following methods such as microbiological (morphological properties of strains), chromatographic (determination of solvent concentration), spectrophotometric (determination of bacterial concentration), and molecular genetic (phylogenetic analysis of strains). Results. The process of acetone-butyl fermentation was analyzed, the main producer strains were considered, the features of the relationship between alcohol formation and sporulation were described, the possibility of butanol obtaining from synthesis gas was shown, and the features of the industrial production of butanol were considered. Conclusions. The features of the mechanism of acetone-butyl fermentation (the relationships between alcohol formation and sporulation, the duration of the acid-forming and alcohol-forming stages during batch fermentation depending on the change in the concentration of H2, CO, partial pressure, organic acids and mineral additives) and obtaining an enrichment culture during the production of butanol as an alternative fuel were shown. The possibility of using synthesis gas as a substrate for reducing atmospheric emissions during the fermentation process was shown. The direction of increasing the productivity of butanol-producing strains to create a competitive industrial biofuel technology was proposed.
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