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Shao Q, Jiang Q, Luo Y, Meng Y, Tian G, Yin X. Identification of a novel frameshift variation in ANKRD11: a case report of KBG syndrome. Front Genet 2025; 15:1439905. [PMID: 39831200 PMCID: PMC11739138 DOI: 10.3389/fgene.2024.1439905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Accepted: 12/09/2024] [Indexed: 01/22/2025] Open
Abstract
Background KBG syndrome (KBGS, OMIM: 148050) is a rare genetic disorder characterized by macrodontia, short stature, skeletal abnormalities, and neurological manifestations. The objective of this study is to investigate a case of KBG syndrome caused by a novel frameshift mutation in ANKRD11. Methods and results We present the case of an 18-year-old Chinese male exhibiting characteristic features including a triangular face, micrognathia, hypertelorism, macrodontia, bushy eyebrows, prominent ears, short stature, low hairline, delayed cognitive development, and scoliosis. Whole exome sequencing identified a novel frameshift variant in the ANKRD11 gene which ultimately led to the diagnosis of KBG syndrome. Conclusion In this study we have identified a previously unreported frameshift variant (NM_013275.6:c.2589dup) in ANKRD11 that causes KBG syndrome. This finding expands both the molecular and clinical spectrum of this rare genetic disease.
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Affiliation(s)
| | | | | | | | | | - Xiao Yin
- Department of Endocrinology and Metabolic Diseases, Shandong First University Affiliated Central Hospital, Jinan, China
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Iida T, Igarashi A, Fukunaga K, Aoki T, Hidai T, Yanagi K, Yamamori M, Satou K, Go H, Kosho T, Maki R, Suzuki T, Nitta Y, Sugie A, Asaoka Y, Furutani-Seiki M, Kimura T, Matsubara Y, Kaname T. Functional analysis of RRAS2 pathogenic variants with a Noonan-like phenotype. Front Genet 2024; 15:1383176. [PMID: 38601074 PMCID: PMC11004488 DOI: 10.3389/fgene.2024.1383176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2024] [Accepted: 03/08/2024] [Indexed: 04/12/2024] Open
Abstract
Introduction: RRAS2, a member of the R-Ras subfamily of Ras-like low-molecular-weight GTPases, is considered to regulate cell proliferation and differentiation via the RAS/MAPK signaling pathway. Seven RRAS2 pathogenic variants have been reported in patients with Noonan syndrome; however, few functional analyses have been conducted. Herein, we report two patients who presented with a Noonan-like phenotype with recurrent and novel RRAS2 pathogenic variants (p.Gly23Val and p.Gly24Glu, respectively) and the results of their functional analysis. Materials and methods: Wild-type (WT) and mutant RRAS2 genes were transiently expressed in Human Embryonic Kidney293 cells. Expression of RRAS2 and phosphorylation of ERK1/2 were confirmed by Western blotting, and the RAS signaling pathway activity was measured using a reporter assay system with the serum response element-luciferase construct. WT and p.Gly23Val RRAS2 were expressed in Drosophila eye using the glass multiple reporter-Gal4 driver. Mutant mRNA microinjection into zebrafish embryos was performed, and the embryo jaws were observed. Results: No obvious differences in the expression of proteins WT, p.Gly23Val, and p.Gly24Glu were observed. The luciferase reporter assay showed that the activity of p.Gly23Val was 2.45 ± 0.95-fold higher than WT, and p.Gly24Glu was 3.06 ± 1.35-fold higher than WT. For transgenic flies, the p.Gly23Val expression resulted in no adults flies emerging, indicating lethality. For mutant mRNA-injected zebrafish embryos, an oval shape and delayed jaw development were observed compared with WT mRNA-injected embryos. These indicated hyperactivity of the RAS signaling pathway. Discussion: Recurrent and novel RRAS2 variants that we reported showed increased in vitro or in vivo RAS signaling pathway activity because of gain-of-function RRAS2 variants. Clinical features are similar to those previously reported, suggesting that RRAS2 gain-of-function variants cause this disease in patients.
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Affiliation(s)
- Takaya Iida
- Department of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan
| | - Arisa Igarashi
- Department of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan
| | - Kae Fukunaga
- Department of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan
- Department of Systems Biochemistry in Pathology and Regeneration, Yamaguchi University Graduate School of Medicine, Yamaguchi, Japan
| | - Taiga Aoki
- Department of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan
| | - Tomomi Hidai
- Department of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan
| | - Kumiko Yanagi
- Department of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan
| | - Masahiko Yamamori
- Department of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan
| | - Kazuhito Satou
- Department of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan
| | - Hayato Go
- Department of Pediatrics, Fukushima Medical University School of Medicine, Fukushima, Japan
| | - Tomoki Kosho
- Department of Medical Genetics, Shinshu University School of Medicine, Matsumoto, Japan
| | - Ryuto Maki
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
| | - Takashi Suzuki
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
| | - Yohei Nitta
- Brain Research Institute, Niigata University, Niigata, Japan
| | - Atsushi Sugie
- Brain Research Institute, Niigata University, Niigata, Japan
| | - Yoichi Asaoka
- Department of Systems Biochemistry in Pathology and Regeneration, Yamaguchi University Graduate School of Medicine, Yamaguchi, Japan
| | - Makoto Furutani-Seiki
- Department of Systems Biochemistry in Pathology and Regeneration, Yamaguchi University Graduate School of Medicine, Yamaguchi, Japan
| | - Tetsuaki Kimura
- Division of Human Genetics, Department of Integrated Genetics, National Institute of Genetics, Mishima, Japan
- Medical Genome Center, Research Institute, National Center for Geriatrics and Gerontology, Obu, Japan
| | | | - Tadashi Kaname
- Department of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan
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Zeng L, Wang J, Zhu H, Huang Y, Deng Y, Wei P, Nie J, Tang B, Chen A, Zhu S. The RRAS2 pathogenic variant (c.67G>T; p. Gly23Cys) produces Noonan syndrome with embryonal rhabdomyosarcoma. Mol Genet Genomic Med 2024; 12:e2313. [PMID: 37942564 PMCID: PMC10767593 DOI: 10.1002/mgg3.2313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 08/01/2023] [Accepted: 10/13/2023] [Indexed: 11/10/2023] Open
Abstract
BACKGROUND Noonan syndrome (NS) due to the RRAS2 gene, the pathogenic variant is an extremely rare RASopathies. Our objective was to identify the potential site of RRAS2, combined with the literature review, to find the correlation between clinical phenotype and genotype. De novo missense mutations affect different aspects of the RRAS2 function, leading to hyperactivation of the RAS-MAPK signaling cascade. METHODS Conventional G-banding was used to analyze the chromosome karyotype of the patient. Copy number variation sequencing (CNV-seq) was used to detect the chromosomal gene microstructure of the patient and her parents. The exomes of the patient and her parents were sequenced using trio-based whole exome sequencing (trio-WES) technology. The candidate variant was verified by Sanger sequencing. The pathogenicity of the variant was predicted with a variety of bioinformatics tools. RESULTS Chromosome analysis of the proband revealed 46, XX, and no abnormality was found by CNV-seq. After sequencing and bioinformatics filtering, the variant of RRAS2(c.67G>T; p. Gly23Cys) was found in the proband, while the mutation was absent in her parents. To the best of our knowledge, our patient was with the typical Noonan syndrome, such as short stature, facial dysmorphism, and developmental delay. Furthermore, our study is the first case of NS with embryonal rhabdomyosarcoma (ERMS) caused by the RRAS2 gene mutation reported in China. CONCLUSIONS Our investigations suggested that the heterozygous missense of RRAS2 may be a potential causal variant in a rare cause of Noonan syndrome, expanding our understanding of the causally relevant mutations for this disorder.
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Affiliation(s)
- Lan Zeng
- Department of Medical Genetics and Prenatal DiagnosisSichuan Provincial Maternity and Child Health Care HospitalChengduChina
| | - Jin Wang
- Department of Medical Genetics and Prenatal DiagnosisSichuan Provincial Maternity and Child Health Care HospitalChengduChina
| | - Hui Zhu
- Department of PediatricsSichuan Provincial Maternity and Child Health Care HospitalChengduChina
| | - Yu Huang
- Department of PediatricsSichuan Provincial Maternity and Child Health Care HospitalChengduChina
| | - Yi Deng
- Department of Medical Genetics and Prenatal DiagnosisSichuan Provincial Maternity and Child Health Care HospitalChengduChina
| | - Ping Wei
- Department of Medical Genetics and Prenatal DiagnosisSichuan Provincial Maternity and Child Health Care HospitalChengduChina
| | - Jing Nie
- Department of Children's Health CareSichuan Provincial Maternity and Child Health Care HospitalChengduChina
| | - Bei Tang
- Department of UltrasoundSichuan Provincial Maternity and Child Health Care HospitalChengduChina
| | - Ai Chen
- Department of PediatricsSichuan Provincial Maternity and Child Health Care HospitalChengduChina
| | - Shuyao Zhu
- Department of PediatricsSichuan Provincial Maternity and Child Health Care HospitalChengduChina
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