Patterns of soil microorganisms and enzymatic activities of various forest types in coastal sandy land

The potential degradability of persistent organic pollutants (POPs) in soil: a perspective from soil aggregates

Aggregates are the fundamental units of soil structure. Clarifying the distribution characteristics of soil organic carbon (SOC), microbial properties (e.g. microbial abundance/diversity, soil enzyme composition/activity) and persistent organic pollutants (POPs) in soil aggregates, along with influencing factors such as aggregate size, specific surface area (SSA), and nutrient content, is crucial for grasping POPs degradation mechanisms in soil. This study reviewed existing literature and identified that SOC mainly accumulated in 0.25-2 mm aggregates, then >2 mm, 0.053-0.25 mm, and <0.053 mm ones. Meta-analysis revealed that microbial abundance and diversity were significantly lower in >2 mm aggregates (p < 0.05), with no difference in the other three. Soil enzyme activities did not show significant variations across different aggregates. Soil nutrients exerted the most pronounced influence on microbial communities within the 0.25-2 mm aggregates whereas the enzyme activities were prominent within the <0.053 mm and >2 mm aggregates, with a generally positive effect. PAHs are mainly distributed in <0.053 mm fractions. For different types of POPs, their distribution in the soil is closely related to their own species characteristics, while their content in aggregates shows a significant positive correlation with SOC and SSA. The heterogeneity in SOC, microbial properties, and POPs distribution increased POPs degradation complexity. Our study provides a basis for understanding POPs environmental behavior and insights for soil remediation. Future research should focus on the interaction mechanisms among nutrients, pollutants, and microbial properties at the aggregate scale to lay the foundation for soil remediation strategies.

Effects of different sand fixation plantations on soil properties in the Hunshandake Sandy Land, Eastern Inner Mongolia, China

Planting forests is an effective way to improve desertification. In order to elucidate the impacts of different vegetation types on soil development and restoration of degraded lands, we compared the properties of soils at different depths in three plantation forests in the Hunsandak Sandy Land in the Chinese agro-pastoral ecotone (Ulmus pumila, Pinus sylvestris var. mongolica, and Populus simonii). The results show that all three plantation forests were able to significantly improve the soil properties, and they resulted in soil nutrient enrichment in the surface layer. As the soil depth increased, the soil became progressively poorer in nutrients, the fine particle content decreased, and the bulk density and water content increased. The orders of the fractal dimension characterization and soil improvement effects of the different tree species were as follows: U. pumila > P. sylvestris var. mongolica > P. simonii. Compared with the bare sand, the soil bulk density under the U. pumila plantation was 19% lower; the soil water content was 74% higher; the soil organic matter, total N, P, and K were 336%, 207%, 106%, and 31% higher; the available N, P, and K were 41%, 125%, and 21% higher; and the clay and silt contents were 498% and 387% higher, respectively. The ranges of the soil fractal dimension were 1.67-2.08 for the bare sandy land and 2.14-2.32 for the planted forests. The soil fractal dimension was strongly correlated with the soil physicochemical properties, especially with the soil nutrients and fine particle content, which exhibited highly significant correlations (p < 0.01), and the correlation coefficients were all greater than 0.8. Therefore, we believe that U. pumila is a suitable sand-fixing plant species in this area. In addition, the soil fractal dimension can be used as an important reference index for characterizing soil properties in sandy areas.

Spent Mushroom Substrate Improves Microbial Quantities and Enzymatic Activity in Soils of Different Farming Systems

Organic fertilizers, such as spent mushroom substrate (SMS), improve soil fertility, but studies comparing their effects on different agricultural soils are limited. In this study, the effects of standard, SMS and composed fertilizers on soils from conventional-integrated, organic and biodynamic farming were investigated. Soil samples were analyzed for microorganisms and the activity of β-glucosidase (β-GLU), β-1,4-N-acetylglucosaminidase (NAG), urease (URE), arylamidase (ARN), phosphatase (PHOS), acid phosphatase (PAC), alkaline phosphatase (PAH) and arylsulphatase (ARS). Biodynamic soil showed the highest microbial counts and enzyme activities, followed by organic and conventional soils. SMS significantly increased the number of microorganisms and enzyme activities, especially in biodynamic and organic soils. Seasonal variations affected all microorganisms and most enzymes in all soils, except NAG in conventional and organic soils. Biodynamic soil showed stable activity of enzymes and microorganisms throughout the year, indicating greater stability. This study concludes that soil microorganisms and enzyme activities respond differently to fertilization depending on the soil type, with SMS demonstrating beneficial effects in all tested soils.

Decoding seasonal changes: soil parameters and microbial communities in tropical dry deciduous forests

In dry deciduous tropical forests, both seasons (winter and summer) offer habitats that are essential ecologically. How these seasonal changes affect soil properties and microbial communities is not yet fully understood. This study aimed to investigate the influence of seasonal fluctuations on soil characteristics and microbial populations. The soil moisture content dramatically increases in the summer. However, the soil pH only gradually shifts from acidic to slightly neutral. During the summer, electrical conductivity (EC) values range from 0.62 to 1.03 ds m-1, in contrast to their decline in the winter. The levels of soil macronutrients and micronutrients increase during the summer, as does the quantity of soil organic carbon (SOC). A two-way ANOVA analysis reveals limited impacts of seasonal fluctuations and specific geographic locations on the amounts of accessible nitrogen (N) and phosphorus (P). Moreover, dehydrogenase, nitrate reductase, and urease activities rise in the summer, while chitinase, protease, and acid phosphatase activities are more pronounced in the winter. The soil microbes were identified in both seasons through 16S rRNA and ITS (Internal Transcribed Spacer) gene sequencing. Results revealed Proteobacteria and Ascomycota as predominant bacterial and fungal phyla. However, Bacillus, Pseudomonas, and Burkholderia are dominant bacterial genera, and Aspergillus, Alternaria, and Trichoderma are dominant fungal genera in the forest soil samples. Dominant bacterial and fungal genera may play a role in essential ecosystem services such as soil health management and nutrient cycling. In both seasons, clear relationships exist between soil properties, including pH, moisture, iron (Fe), zinc (Zn), and microbial diversity. Enzymatic activities and microbial shift relate positively with soil parameters. This study highlights robust soil-microbial interactions that persist mainly in the top layers of tropical dry deciduous forests in the summer and winter seasons. It provides insights into the responses of soil-microbial communities to seasonal changes, advancing our understanding of ecosystem dynamics and biodiversity preservation.

Distinct response patterns of plants and soil microorganisms to agronomic practices and seasonal variation in a floodplain ecosystem

Introduction

Climate change and anthropogenic activities are the greatest threats to floodplain ecosystems. A growing body of literature shows that floodplain ecosystems have experienced increased chemical fertilizer and pesticide loads, which will disturb the above and belowground ecosystems. However, we lack knowledge regarding the effects of such human activities on the vegetation and soil microbiomes in these ecosystems.

Methods

In the present study, plant functional traits and Illumina Mi-Seq sequencing were to assess the impact of nitrogen fertilizer and glyphosate addition on the structure and function of the vegetation and soil microbiomes (bacteria, fungi, and protists) in a floodplain ecosystem, and to assess the influence of seasonal variation.

Results

We identified distinct response mechanisms of plant and microbial communities to the addition of nitrogen fertilizer and glyphosate, and seasonal variation. Nitrogen fertilizer and glyphosate significantly affected plant diversity, aboveground and underground biomass, and C and N content and significantly changed the leaf area and plant stature of dominant plants. However, the addition of nitrogen fertilizer and glyphosate did not significantly affect the diversity and structure of bacterial, fungal, and protist communities. The application of nitrogen fertilizer could improve the negative effects of glyphosate on the functional traits of plant communities. The seasonal variation of floodplain has significantly changed the soil's physical, chemical, and biological properties. Our results showed that compared with that in summer, the soil ecosystem multifunctionality of the floodplain ecosystem in autumn was significantly lower. Seasonal variation had a significant effect on plant diversity and functional traits. Moreover, seasonal variation significantly affected the community compositions, diversity, and structure of bacteria, fungi, and protists. Seasonal variation had a stronger impact on fungal community assembly than on that of bacteria and protists. In summer, the assembly of the fungal community was dominated by a deterministic process, while in autumn, it is dominated by a stochastic process. In addition, the negative association among bacteria, fungi, and protists has been strengthened in autumn and formed a more robust network to cope with external changes.

Discussion

These results extended our understanding of the ecological patterns of soil microbiomes in floodplain ecosystems and provided support for enhancing the ecological barrier function and the service potential of floodplain ecosystems.

The effects of ectomycorrhizal and saprotropic fungi on soil nitrogen mineralization differ from those of arbuscular and ericoid mycorrhizal fungi on the eastern Qinghai-Tibetan Plateau

Interactions between soil fungi and soil environmental factors regulate soil nitrogen (N) mineralization rates on the eastern Qinghai-Tibetan Plateau. Some studies have also illuminated differences in soil N mineralization rate based on different mycorrhizal forests, but the associated effect of soil fungal functional guilds and soil environmental factors underlying this process are not well-understood. Three primary forests respectively dominated by Abies fargesii var. faxoniana (ectomycorrhizal, EcM), Cupressus chengiana (arbuscular mycorrhizal, AM) and Rhododendron phaeochrysum (ericoid mycorrhizal, ErM) trees were selected in this area. Meanwhile, soil net N mineralization rate, soil fungal composition and soil enzyme activity among these three mycorrhizal forests were studied. Our results showed that there were significant differences in the seasonal variation of soil net N mineralization rates among three mycorrhizal forests. Soil net N mineralization rate in the AM forest was faster. EcM fungi and saprotroph are the main functional guilds in these three mycorrhizal forests. Meanwhile, the relative abundances of soil fungal functional guilds, soil temperature and soil peroxidase activity could explain 85.0% in the difference of soil net ammonification rate among three mycorrhizal forests. In addition, soil temperature, soil water-filled pore space and soil ammonium content play a central role in controlling the differing soil net nitrification rate among three mycorrhizal forests. Our results suggest differences in soil net mineralization among different mycorrhizal forest types are driven mainly by soil net ammonification. Soil fungal functional guilds and temperature regulate the rate of soil net ammonification by modulating soil peroxidase activity.

Construction, Characterization, and Application of an Ammonium Transporter (AmtB) Deletion Mutant of the Nitrogen-Fixing Bacterium Kosakonia radicincitans GXGL-4A in Cucumis sativus L. Seedlings

Nitrogen is an important factor affecting crop yield, but excessive use of chemical nitrogen fertilizer has caused decline in nitrogen utilization and soil and water pollution. Reducing the utilization of chemical nitrogen fertilizers by biological nitrogen fixation (BNF) is feasible for green production of crops. However, there are few reports on how to have more ammonium produced by nitrogen-fixing bacteria (NFB) flow outside the cell. In the present study, the amtB gene encoding an ammonium transporter (AmtB) in the genome of NFB strain Kosakonia radicincitans GXGL-4A was deleted and the △amtB mutant was characterized. The results showed that deletion of the amtB gene had no influence on the growth of bacterial cells. The extracellular ammonium nitrogen (NH₄⁺) content of the △amtB mutant under nitrogen-free culture conditions was significantly higher than that of the wild-type strain GXGL-4A (WT-GXGL-4A), suggesting disruption of NH₄⁺ transport. Meanwhile, the plant growth-promoting effect in cucumber seedlings was visualized after fertilization using cells of the △amtB mutant. NFB fertilization continuously increased the cucumber rhizosphere soil pH. The nitrate nitrogen (NO₃^-) content in soil in the △amtB treatment group was significantly higher than that in the WT-GXGL-4A treatment group in the short term but there was no difference in soil NH₄⁺ contents between groups. Soil enzymatic activities varied during a 45-day assessment period, indicating that △amtB fertilization influenced soil nitrogen cycling in the cucumber rhizosphere. The results will provide a solid foundation for developing the NFB GXGL-4A into an efficient biofertilizer agent.

Spatio-Temporal Dynamic of the Land Use/Cover Change and Scenario Simulation in the Southeast Coastal Shelterbelt System Construction Project Region of China

The National Coastal Shelterbelt System Construction Project (NCSSCP) was proposed to increase the afforestation area and neutralize the impact of urbanization, especially in the southeast coastal sub-region of China. In this study, we identified the spatio-temporal evolution characteristics and predicted the land use and land cover changes (LUCC) associated with this project by modeling scenarios, seeking to explore the path of sustainable development. The spatial structure was analyzed using the landscape pattern index approach and the land use transfer matrix. By coupling the Markov model and patch-generating a land-use simulation model (PLUS), different scenarios were analyzed to predict the quantity and spatial changes. According to the results, based on the current trends and due to the impact of urbanization, the forest area was predicted to decrease by 633.19 km2, whilst appearing more spatially fragmented and separated. However, with the completion of the NCSSCP target, the forest area was predicted to increase by 1666.12 km2, and the spatial structure would appear more cohesive and concentrated. From an overall perspective, the afforestation target of NCSSCP will not be completed under the present trend. It is difficult for the afforestation speed of the NCSSCP to keep up with the speed of urbanization. Therefore, giving consideration to both the afforestation speed and quality and reducing the speed of urbanization to balance the economy and ecology would be beneficial in terms of the realization of the aims of sustainable development.

Soil health is the basis of organic agriculture

The biologization of agriculture is a topical issue both in Russia and in the world. The objective of the presented experiment was to confirm the positive effect biopreparations treatment of the fruit crops on the soil microbiota. As a result, in soil samples selected depend on the intensity of chemical fungicides application, from 1.15 x 104 to 1.23 x 104 CFU of micromycetes in one gram of absolutely dry soil were isolated. It was found that the largest amount of potentially pathogenic fungi was isolated in a soil sample cultivated using only chemical preparations - 20.5% of the total number of colonies. In the variant with the inclusion of biopreparation in the technology – from 7.2% to 11.0% of potentially pathogenic fungi of the total number of micromycetes. The most common among potentially pathogenic micromycetes were fungi of the genus Fusarium spp. Fungi of the genus Trichoderma were detected in all variants – not exceed 10% in the total number of micromycetes.