fliA, flrB, and fliR regulate adhesion by controlling the expression of critical virulence genes in Vibrio harveyi

Electrochemically active biofilms responses to gadolinium stress during wastewater treatment in bioelectrochemical systems

Gadolinium-based contrast agents used in magnetic resonance imaging (MRI) contribute to increasing gadolinium(III) [Gd(III)] concentrations in aquatic environments, as conventional wastewater treatment plants lack effective removal mechanisms. This study investigated the potential of single-chamber microbial fuel cells (SCMFCs) for Gd(III) removal, focusing on removal efficiency and the physiological responses of electrochemically active biofilms. SCMFCs demonstrated exceptional Gd(III) removal efficiency exceeding 99.75 ± 0.007 % across various initial concentrations (10-60 mg/L). Power output and chemical oxygen demand (COD) removal efficiency showed dose-dependent responses to Gd(III) stress, with maximum power output decreasing from 479.56 mV to 260.43 mV as Gd(III) increased from 0 to 60 mg/L. COD removal efficiency declined from 96.49 ± 1.2 % to 90.23 ± 1.6 % over the same range. Microbial community analysis revealed selective enrichment of exoelectrogens at lower Gd(III) concentrations, with Geobacter relative abundance decreasing from 11.14 % to 1.82 %. Scanning electron microscopy (SEM) and confocal laser scanning microscopy (CLSM) analyses demonstrated that elevated Gd(III) concentrations reduced electrochemically active bacterial colonization in anode biofilms. Fourier-transform infrared spectroscopy (FTIR) identified specific functional groups associated with Gd(III) biosorption, while predictive functional profiling indicated upregulation of metal resistance genes under Gd(III) exposure. These findings demonstrate the effectiveness of SCMFCs in Gd(III) removal from wastewater while elucidating microbial adaptation mechanisms to rare earth element exposure, providing insights for developing sustainable treatment solutions for emerging contaminants.

Identification and Characterization of Non-protein Coding RNA Homologs in Serratia Marcescens by Comparative Transcriptomics

The Serratia marcescens is a Gram-negative bacterium from the Enterobacteriaceae family. Recently, S. marcescens have evolved to become a versatile and opportunistic pathogen. Furthermore, this bacterium is also a multi-drug resistant pathogen exhibiting Extended-Spectrum Beta-Lactamases (ESBL) activity. This bacterium is highly associated with infections in healthcare settings and even leads to death. Hence, an advanced approach based on non-protein coding RNA (npcRNA) of S. marcescens was considered in this study to understand its regulatory roles in virulence, pathogenesis, and the differential expression of these transcripts in various growth phases of the bacterium. BLASTn search of known npcRNAs from Salmonella typhi, Escherichia coli, and Yersinia pestis against S. marcescens was performed to discover putative conserved homologous transcripts. The novelty of these putative homologous npcRNAs was verified by screening through the Rfam web tool. The target mRNA for the homologs was predicted via the TargetRNA2 webtool to understand the possible regulatory roles of these transcripts. The npcRNA homologs, which were predicted to regulate virulence target mRNA were assessed for their expression profile at different growth stages via reverse transcription PCR and the band intensity was quantitatively analysed using the Image J tool. The known npcRNA ssrS, from S. typhi showed expression in S. marcescens during three growth stages (lag, log, and stationary). Expression was observed to be high during the lag phase followed by a similarly low-level expression during the log and no expression during stationary phase. This ssrS homolog was predicted to regulate mRNA that encodes for protein FliR, which is associated with virulence. This is a preliminary study that lay the foundation for further elucidation of more virulence-associated npcRNAs that are yet to be discovered from S. marcescens, which can be useful for diagnostics and therapeutic applications.

Supplementary Information

The online version contains supplementary material available at 10.1007/s12088-023-01160-y.

Characterization of fliR-deletion mutant ΔfliR from Vibrio alginolyticus and the evaluation as a live attenuated vaccine

Vibrio alginolyticus is the common pathogen affecting various species of marine organisms. It has been demonstrated that fliR is a necessary virulence factor to adhere and infect their hosts for pathogenic bacteria. Frequent disease outbreaks in aquaculture have highlighted the necessity of developing effective vaccines. In the present study, in order to investigate the function of fliR in V.alginolyticus, the fliR deletion mutant ΔfliR was constructed and its biological properties were evaluated, additionally, the differences in gene expression levels between wild-type and ΔfliR were analyzed by transcriptomics. Finally, ΔfliR was used as a live attenuated vaccine to immunize grouper via the intraperitoneal route to evaluate its protective effect. Results show that fliR gene of V. alginolyticus was identified as being 783 bp in length, encoding 260 amino acids, and showing significant similarity to homologs of other Vibrio species. The fliR-deletion mutant ΔfliR of V. alginolyticus was successfully constructed, and its biological phenotype analysis showed no significant differences in growth capacity and extracellular enzyme activity compared to the wild-type. However, a substantial reduction of motility ability was detected in ΔfliR. Transcriptomic analysis revealed that the absence of fliR gene is responsible for a significantly decreased expression of flagellar genes, including flaA, flaB, fliS, flhB and fliM. The fliR-deletion mainly affects the related pathways involved in cell motility, membrane transport, signal transduction, carbohydrate metabolism, and amino acid metabolism in V. alginolyticus. The efficacy of ΔfliR as a candidate of live attenuated vaccine were evaluated by intraperitoneal injection in grouper. The ΔfliR provided the RPS (Relative protection rate) of 67.2% against V. alginolyticus in groupers. The ΔfliR efficiently stimulated antibody production with specific IgM still detected at 42 d post-vaccination, and significantly elevated the activity of antioxidant enzymes like Catalase (CAT), Superoxide dismutase (SOD), and lactate dehydrogenase (LDH) in the serum. The higher expression levels of immune-related genes were observed in the immune tissues of inoculated grouper compared to the control. In conclusion, ΔfliR effectively improved the immunity of inoculated fish. The results suggest that ΔfliR is an effective live attenuated vaccine against vibriosis in in grouper.