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Oyebamiji AK, Josiah OM, Akintelu SA, Adeoye MD, Sabitu BO, Latona DF, Esan AO, Soetan EA, Semire B. Dataset on insightful bio-evaluation of 2-(quinoline-4-yloxy)acetamide analogues as potential anti- Mycobacterium tuberculosis catalase-peroxidase agents via in silico mechanisms. Data Brief 2021; 38:107441. [PMID: 34692949 PMCID: PMC8511800 DOI: 10.1016/j.dib.2021.107441] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Revised: 09/14/2021] [Accepted: 09/28/2021] [Indexed: 01/03/2023] Open
Abstract
The continuous havoc wrecked by tuberculosis among humans worldwide remains colossal. In this work, twenty-one (21) 2-(quinoline-4-yloxy)acetamide analogues were observed against Mycobacterium tuberculosis catalase-peroxidase (This enzyme shields bacteria from poisonous drug-like molecules) (PDB ID: 1sj2) using density functional theory method, QSAR study using material studio software and docking method via PyMol, AutoDock Tool, AutoDock Vina and Discovery studio 2017 as well as ADMET study via admetSAR2. Twelve descriptors were obtained from the optimized compounds which were used to develop valid QSAR model. More so, the binding affinity between 2-(quinoline-4-yloxy)acetamide analogues and Mycobacterium tuberculosis catalase-peroxidase (PDB ID: 1sj2) via docking method were reported. ADMET properties of some selected compounds were also examined.
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Affiliation(s)
- Abel Kolawole Oyebamiji
- Department of Pure and Applied Chemistry, Computational Chemistry Research Laboratory, Ladoke Akintola University of Technology, P.M.B. 4000, Ogbomoso, Oyo State, Nigeria
- Department of Basic Sciences, Adeleke University, Ede, Osun State, Nigeria
- Corresponding author at: Department of Pure and Applied Chemistry, Computational Chemistry Research Laboratory, Ladoke Akintola University of Technology, P.M.B. 4000, Ogbomoso, Oyo State, Nigeria.
| | | | - Sunday Adewale Akintelu
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, China
| | | | | | - Dayo Felix Latona
- Department of Pure and Applied Chemistry, Osun State University, Osogbo, Nigeria
| | - Akintomiwa O. Esan
- Department of Pure and Applied Chemistry, Computational Chemistry Research Laboratory, Ladoke Akintola University of Technology, P.M.B. 4000, Ogbomoso, Oyo State, Nigeria
- School of Chemical Sciences, Universiti Sains Malaysia, Penang, Malaysia
| | | | - Banjo Semire
- Department of Pure and Applied Chemistry, Computational Chemistry Research Laboratory, Ladoke Akintola University of Technology, P.M.B. 4000, Ogbomoso, Oyo State, Nigeria
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Oyebamiji AK, Abdulsalami IO, Semire B. Dataset on Insilico approaches for 3,4-dihydropyrimidin-2(1H)-one urea derivatives as efficient Staphylococcus aureus inhibitor. Data Brief 2020; 32:106195. [PMID: 32939374 PMCID: PMC7476855 DOI: 10.1016/j.dib.2020.106195] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Revised: 08/07/2020] [Accepted: 08/14/2020] [Indexed: 02/03/2023] Open
Abstract
Series of anti- Staphylococcus aureus were studied via quantum chemical method and several molecular descriptors were obtained which were further used to develop QSAR model using back propagation neural network method using MATLAB. More so, the molecular interaction observed between 3,4-dihydropyrimidin-2(1H)-one Urea Derivatives and Staphylococcus aureus Sortase (PDB ID Code: 2kid) via docking was used as a screening tool for the studied compounds. The observed molecular compounds used in this work was also correlated to Lipinski rule of five and the developed QSAR model using selected descriptors from the optimized compounds was also examined for its predictability. Also, the observed molecular docking revealed the interaction between the studied complex.
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Affiliation(s)
- Abel Kolawole Oyebamiji
- Department of Basic Sciences, Adeleke University, P.M.B. 250, Ede, Osun State, Nigeria.,Computational Chemistry Research Laboratory, Department of Pure and Applied Chemistry, Ladoke Akintola University of Technology, P.M.B. 4000, Ogbomoso, Oyo State, Nigeria
| | | | - Banjo Semire
- Computational Chemistry Research Laboratory, Department of Pure and Applied Chemistry, Ladoke Akintola University of Technology, P.M.B. 4000, Ogbomoso, Oyo State, Nigeria
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