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Zhang Z, Sheetz EG, Pink M, Yamamoto N, Flood AH. Cone Angles Quantify and Predict the Affinity and Reactivity of Anion Complexes between Trifluoroborates and Rigid Macrocycles. Angew Chem Int Ed Engl 2024; 63:e202409070. [PMID: 38969622 DOI: 10.1002/anie.202409070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Revised: 07/04/2024] [Accepted: 07/05/2024] [Indexed: 07/07/2024]
Abstract
Steric manipulation is a known concept in molecular recognition but there is currently no linear free energy relationship correlating sterics to the stability of receptor-anion complexes nor to the reactivity of the bound anion. By analogy to Tolman cone angles in cation coordination chemistry, we explore how to define and correlate cone angles of organo-trifluoroborates (R-BF3 -) to the affinities observed for cyanostar-anion binding. We extend the analogy to a rare investigation of the anion's reactivity and how it changes upon binding. The substituent on the anion is used to define the cone angle, θ. A series of 10 anions were studied including versions with ethynyl, ethylene, and ethyl substituents to tune steric bulk across the sp, sp2 and sp3 hybridized α-carbons bearing 0, 1 and 2 hydrogen atoms. A linear relationship between affinity and cone angle is observed for anions bearing substituents larger than the -BF3 - headgroup. This correlation predicted affinities of two new anions to within ±5 %. We explored how complexation affects the reactivity of fluoride exchange. The yield of fluoride transfer from R-BF3 - to Lewis acid triphenylborane is correlated with cone angle. We predict that other rigid macrocycles, like commercially available bambusuril, could follow these trends.
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Affiliation(s)
- Zhao Zhang
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Edward G Sheetz
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Maren Pink
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Nobuyuki Yamamoto
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Amar H Flood
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
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2
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Prapakaran T, Kuppuswamy S, Murugavel R. Supramolecular aggregation in sterically encumbered monoarylphosphates and their H-bonded adducts: multigram synthesis of elusive 2,6-di- tert-butylphenyl phosphate. CrystEngComm 2022. [DOI: 10.1039/d2ce00172a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A viable synthetic methodology has been developed for multigram synthesis of bulky 2,6-di-tert-butyphenyl phosphate; its supramolecular association behaviour and those of adducts formed with N-bases is established.
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Affiliation(s)
- T. Prapakaran
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - S. Kuppuswamy
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Ramaswamy Murugavel
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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3
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Persson I, Lundberg D, Bajnóczi ÉG, Klementiev K, Just J, Sigfridsson Clauss KGV. EXAFS Study on the Coordination Chemistry of the Solvated Copper(II) Ion in a Series of Oxygen Donor Solvents. Inorg Chem 2020; 59:9538-9550. [PMID: 32614569 PMCID: PMC7467664 DOI: 10.1021/acs.inorgchem.0c00403] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
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The
structures of the solvated copper(II) ion in water and nine organic
oxygen donor solvents with similar electron-pair donor ability, but
with different space-demanding properties at coordination, have been
studied by EXAFS. N,N′-Dimethylpropyleneurea
and N,N,N′,N′-tetramethylurea are sufficiently
space demanding at coordination to make the axial positions not accessible,
resulting in square-planar copper(II) solvate complexes with an intense
green color. The mean Cu–O bond distances in these two solvate
complexes are 1.939(3) and 1.935(3) Å, respectively. The best
fits of the remaining solvates, which are light blue in different
hues, are obtained with a Jahn–Teller distorted-octahedral
model consisting of four strongly bound solvent molecules in the equatorial
positions at 1.96(2) Å and two in the axial positions but with
different Cu–Oax bond distances: ca. 2.15 and 2.32
Å. This is in agreement with observations in solid-state structures
of compounds containing hexaaquacopper(II) complexes crystallizing
in noncentrosymmetric space groups and all reported crystal structures
containing a [Cu(H2O)5(O-ligand)] complex with
Jahn–Teller distortion. Such a structure is in agreement with
previous EPR and EXAFS studies proving the hydrated copper(II) ion
to be a noncentrosymmetric complex in aqueous solution. The refinements
of the EXAFS data of the solids [Cu(H2O)6](ClO4)2, [Cu(H2O)6](BrO3)2, [Cu(H2O)6]SiF6, Cu(NO3)2·2.5H2O, and CuSO4·5H2O gave Cu–O bond distances significantly
different from those reported in the crystallographic studies but
similar to the configuration and bond distances in the hydrated copper(II)
ion in aqueous solution. This may depend on whether the orientation
of the axial positions is random in one or three dimensions, giving
a mean structure of the solid with symmetry higher than that of the
individual complexes. This study presents the very first experimental
data from the new X-ray absorption spectroscopy beamline Balder at
the MAX IV synchrotron radiation facility in Lund, Sweden, as well
as the utilized properties of the beamline. The coordination chemistry of the solvated copper(II) ion
has been studied in 10 solvents, including water. The copper(II) ion
has a noncentrosymmetric Jahn−Teller distorted-octahedral geometry
with the axial Cu−O bond distances differing by ca. 0.2 Å.
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Affiliation(s)
- Ingmar Persson
- Department of Molecular Sciences, Swedish University of Agricultural Sciences, P.O. Box 7015, SE-750 07 Uppsala, Sweden
| | - Daniel Lundberg
- Department of Molecular Sciences, Swedish University of Agricultural Sciences, P.O. Box 7015, SE-750 07 Uppsala, Sweden
| | - Éva G Bajnóczi
- Department of Molecular Sciences, Swedish University of Agricultural Sciences, P.O. Box 7015, SE-750 07 Uppsala, Sweden
| | | | - Justus Just
- MAX IV Laboratory, Lund University, P.O. Box 118, SE-221 00 Lund, Sweden
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Dicarboxylate-Induced Structural Diversity of Luminescent Zn(II)/Cd(II) Metal-Organic Frameworks Based on the 2,5-Bis(4-pyridyl)thiazolo[5,4-d
]thiazole Ligand. Eur J Inorg Chem 2019. [DOI: 10.1002/ejic.201900259] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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5
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Santra B, Mandal D, Gupta V, Kalita P, Kumar V, Narayanan RS, Dey A, Chrysochos N, Mohammad A, Singh A, Zimmer M, Dalapati R, Biswas S, Schulzke C, Chandrasekhar V, Scheschkewitz D, Jana A. Structural Diversity in Supramolecular Organization of Anionic Phosphate Monoesters: Role of Cations. ACS OMEGA 2019; 4:2118-2133. [PMID: 31459460 PMCID: PMC6648147 DOI: 10.1021/acsomega.8b03192] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Accepted: 01/02/2019] [Indexed: 06/10/2023]
Abstract
Syntheses and structures of anionic arylphosphate monoesters [ArOP(O)2(OH)]- (Ar = 2,6-CHPh2-4-R-C6H2; R = Me/Et/iPr/tBu) with different counter cations are reported. The counter cations were varied systematically: imidazolium cation, 2-methyl imidazolium cation, N-methyl imidazolium cation, N,N'-alkyl substituted imidazolium cation, 1,4-diazabicyclo[2.2.2]octan-1-ium cation, 4,4'-bipyridinium dication, and magnesium(II) dication. The objective was to examine if the supramolecular structure of anionic arylphosphate monoesters could be modulated by varying the cation. It was found that an eight-membered P2O4H2-hydrogen-bonded dimeric motif involving intermolecular H-bonding between the [P(O)(OH)] unit of the anionic phosphate monoester along with the counter cation is formed with 2-methyl imidazolium cation, N-methyl imidazolium cation, N,N'-alkyl substituted imidazolium cation, 1,4-diazabicyclo[2.2.2]octan-1-ium cation, and magnesium(II) dication; both discrete and polymeric H-bonded structures are observed. In the case of imidazolium cations and 1,4-diazabicyclo[2.2.2]octan-1-ium cation, the formation of one-dimensional polymers (single lane/double lane) was observed. On the other hand, two types of phosphate motifs, intermolecular H-bonded dimer and an open-form, were observed in the case of 4,4'-bipyridinium dication.
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Affiliation(s)
- Biswajit Santra
- Tata
Institute of Fundamental Research Hyderabad, Gopanpally, Hyderabad 500107, India
| | - Debdeep Mandal
- Tata
Institute of Fundamental Research Hyderabad, Gopanpally, Hyderabad 500107, India
| | - Vivek Gupta
- Tata
Institute of Fundamental Research Hyderabad, Gopanpally, Hyderabad 500107, India
| | - Pankaj Kalita
- National
Institute of Science Education and Research Bhubaneswar, HBNI, Bhubaneswar 752050, Odisha, India
| | - Vierandra Kumar
- Department
of Chemistry, Indian Institute of Technology
Kanpur, Kanpur 208016, India
| | | | - Atanu Dey
- Tata
Institute of Fundamental Research Hyderabad, Gopanpally, Hyderabad 500107, India
| | - Nicolas Chrysochos
- Institut
für Biochemie, Ernst-Moritz-Arndt
Universität Greifswald, Felix-Hausdorff-Straße 4, D-17487 Greifswald, Germany
| | - Akbar Mohammad
- Discipline
of Chemistry, Indian Institute of Technology
Indore, Simrol, Khandwa Road, Indore 453552, India
| | - Ajeet Singh
- Discipline
of Chemistry, Indian Institute of Technology
Indore, Simrol, Khandwa Road, Indore 453552, India
| | - Michael Zimmer
- Krupp-Chair
of General and Inorganic Chemistry, Saarland
University, 66123 Saarbrücken, Germany
| | - Rana Dalapati
- Department
of Chemistry, Indian Institute of Technology
Guwahati, Guwahati 781039, Assam, India
| | - Shyam Biswas
- Department
of Chemistry, Indian Institute of Technology
Guwahati, Guwahati 781039, Assam, India
| | - Carola Schulzke
- Institut
für Biochemie, Ernst-Moritz-Arndt
Universität Greifswald, Felix-Hausdorff-Straße 4, D-17487 Greifswald, Germany
| | - Vadapalli Chandrasekhar
- Tata
Institute of Fundamental Research Hyderabad, Gopanpally, Hyderabad 500107, India
- Department
of Chemistry, Indian Institute of Technology
Kanpur, Kanpur 208016, India
| | - David Scheschkewitz
- Krupp-Chair
of General and Inorganic Chemistry, Saarland
University, 66123 Saarbrücken, Germany
| | - Anukul Jana
- Tata
Institute of Fundamental Research Hyderabad, Gopanpally, Hyderabad 500107, India
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Gupta V, Santra B, Mandal D, Das S, Narayanan RS, Kalita P, Rao DK, Schulzke C, Pati SK, Chandrasekhar V, Jana A. Neutral and anionic phosphate-diesters as molecular templates for the encapsulation of a water dimer. Chem Commun (Camb) 2018; 54:11913-11916. [DOI: 10.1039/c8cc07138a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Neutral and anionic phosphate diesters act as molecular templates for the encapsulation of water dimers.
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Affiliation(s)
- Vivek Gupta
- Tata Institute of Fundamental Research Hyderabad
- Hyderabad-500107
- India
| | - Biswajit Santra
- Tata Institute of Fundamental Research Hyderabad
- Hyderabad-500107
- India
| | - Debdeep Mandal
- Tata Institute of Fundamental Research Hyderabad
- Hyderabad-500107
- India
| | - Shubhajit Das
- New Chemistry Unit, Jawaharlal Nehru Centre for Advanced Scientific Research
- Bangalore-560064
- India
| | | | - Pankaj Kalita
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI
- Bhubaneswar-752050
- India
| | - D. Krishna Rao
- Tata Institute of Fundamental Research Hyderabad
- Hyderabad-500107
- India
| | - Carola Schulzke
- Institut für Biochemie, Universität Greifswald, Felix-Hausdorff-Straße 4
- Greifswald
- Germany
| | - Swapan K. Pati
- Theoretical Sciences Unit, Jawaharlal Nehru Centre for Advanced Scientific Research
- Bangalore-560064
- India
| | - Vadapalli Chandrasekhar
- Tata Institute of Fundamental Research Hyderabad
- Hyderabad-500107
- India
- Department of Chemistry, Indian Institute of Technology Kanpur
- Kanpur-208016
| | - Anukul Jana
- Tata Institute of Fundamental Research Hyderabad
- Hyderabad-500107
- India
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7
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Mandal D, Santra B, Kalita P, Chrysochos N, Malakar A, Narayanan RS, Biswas S, Schulzke C, Chandrasekhar V, Jana A. 2,6-(Diphenylmethyl)-Aryl-Substituted Neutral and Anionic Phosphates: Approaches to H-Bonded Dimeric Molecular Structures. ChemistrySelect 2017. [DOI: 10.1002/slct.201701133] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Debdeep Mandal
- TIFR Centre for Interdisciplinarry Sciences Hyderabad, 21, Brundavan Colony, Narsingi; Hyderabad-500075, India
| | - Biswajit Santra
- TIFR Centre for Interdisciplinarry Sciences Hyderabad, 21, Brundavan Colony, Narsingi; Hyderabad-500075, India
| | - Pankaj Kalita
- National Institute of Science Education and Research Bhubaneswar; Jatni Khurda-752050, Odisha India
| | - Nicolas Chrysochos
- Institut für Biochemie; Ernst-Moritz-Arndt Universität Greifswald; Felix-Hausdorff-Straße 4 D-17487 Greifswald Germany
| | - Amit Malakar
- TIFR Centre for Interdisciplinarry Sciences Hyderabad, 21, Brundavan Colony, Narsingi; Hyderabad-500075, India
- National Institute of Science Education and Research Bhubaneswar; Jatni Khurda-752050, Odisha India
| | - Ramakirushnan Suriya Narayanan
- TIFR Centre for Interdisciplinarry Sciences Hyderabad, 21, Brundavan Colony, Narsingi; Hyderabad-500075, India
- National Institute of Science Education and Research Bhubaneswar; Jatni Khurda-752050, Odisha India
| | - Sourav Biswas
- Department of Chemistry; Indian Institute of Technology Kanpur; Kanpur 208016 India
| | - Carola Schulzke
- Institut für Biochemie; Ernst-Moritz-Arndt Universität Greifswald; Felix-Hausdorff-Straße 4 D-17487 Greifswald Germany
| | - Vadapalli Chandrasekhar
- TIFR Centre for Interdisciplinarry Sciences Hyderabad, 21, Brundavan Colony, Narsingi; Hyderabad-500075, India
- Department of Chemistry; Indian Institute of Technology Kanpur; Kanpur 208016 India
| | - Anukul Jana
- TIFR Centre for Interdisciplinarry Sciences Hyderabad, 21, Brundavan Colony, Narsingi; Hyderabad-500075, India
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