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Taysi MR, Kirici M, Kirici M, Tuzun B, Poustforoosh A. Antioxidant enzyme activities, molecular docking studies, MM-GBSA, and molecular dynamic of chlorpyrifos in freshwater fish Capoeta umbla. J Biomol Struct Dyn 2024; 42:163-176. [PMID: 36974945 DOI: 10.1080/07391102.2023.2192807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Accepted: 03/10/2023] [Indexed: 03/29/2023]
Abstract
Chlorpyrifos (CPF), which was started to be used in 1965, is a broad spectrum organophosphate insecticide that is used more and more day by day. Commonly used to control pests in farmland and homes, CPF is more toxic to fish than organochlorine compounds. CPF poses a serious threat to the health of humans and aquatic organisms. This paper studies the relationship between CPF exposure and antioxidant enzyme activities in gill, kidney and liver tissues of Capoeta umbla. Different time intervals (12, 24, 48, 72, and 96 h) and CPF doses (55 and 110 µg L-1) were used in the study. Spectrophotometrical measures were taken in all tissues for antioxidant enzyme activities and malondialdehyde (MDA) levels, as indices of the lipid peroxidation (LPO). A positive relationship between CPF and MDA levels was found in the study at a statistically significant level (p < 0.05). The study also found a negative relationship between CPF levels and catalase (CAT), superoxide dismutase (SOD), glutathione peroxidase (GPx), and glutathione reductase (GR) activity. Independent variables in the study can act as biomarkers of CPF exposure. The study recommends employing proper ecotoxicological risk evaluations in cases of CPF usage as a pesticide. The activities of the studied molecules against various proteins that are crystal structure of human peroxiredoxin 5 (PDB ID: 1HD2) has docking score value is -2.67, crystal structure of Bovine Xanthine Oxidase (PDB ID: 3NRZ) has docking score value is -3.76, and crystal structure of antibacterial FabH (PDB ID: 4Z8D) has docking score value is -3.16, were compared. Molecular dynamic (MD) calculations were made in 100 ns. MM/GBSA methods are calculated binding free energy. Afterwards, ADME/T analysis was performed to examine the some properties of the molecules.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Mehmet Reşit Taysi
- Department of Fisheries, Faculty of Agriculture, Bingol University, Bingöl, Turkey
| | - Muammer Kirici
- Department of Veterinary Health, Food Agriculture and Livestock Vocational School, Bingöl University, Bingöl, Turkey
| | - Mahinur Kirici
- Department of Chemistry, Faculty of Arts and Science, Bingöl University, Bingöl, Turkey
| | - Burak Tuzun
- Plant and Animal Production Department, Technical Sciences Vocational School of Sivas, Sivas Cumhuriyet University, Sivas, Turkey
| | - Alireza Poustforoosh
- Chemical Engineering Department, Faculty of Engineering, Shahid Bahonar University of Kerman, Kerman, Iran
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Akkurt M, Naghiyev FN, Khrustalev VN, Asadov KA, Khalilov AN, Bhattarai A, Mamedov İG. Crystal structure and Hirshfeld surface analysis of (2 E)-1-(4-bromo-phen-yl)-3-(2-methyl-phen-yl)prop-2-en-1-one. Acta Crystallogr E Crystallogr Commun 2023; 79:847-851. [PMID: 37693662 PMCID: PMC10483568 DOI: 10.1107/s2056989023007387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 08/22/2023] [Indexed: 09/12/2023]
Abstract
In the title com-pound, C16H13BrO, the planes of the aromatic rings are inclined at an angle of 23.49 (15)°, and the configuration about the C=C bond is E. In the crystal, the mol-ecules are linked into chains by weak C-H⋯O inter-actions along the b axis. Successive chains form a zigzag structure along the c axis, and these chains are connected to each other by face-to-face π-π stacking inter-actions along the a axis. These layers, parallel to the (001) plane, are linked by van der Waals inter-actions, thus consolidating the crystal structure. Hirshfeld surface analysis showed that the most significant contacts in the structure are H⋯H (43.1%), C⋯H/H⋯C (17.4%), Br⋯H/H⋯Br (14.9%), C⋯C (11.9%) and O⋯H/H⋯O (9.8%).
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Affiliation(s)
- Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Farid N. Naghiyev
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, AZ1148, Baku, Azerbaijan
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow 117198, Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation
| | - Khammed A. Asadov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, AZ1148, Baku, Azerbaijan
| | - Ali N. Khalilov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, AZ1148, Baku, Azerbaijan
- ‘Composite Materials’ Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, AZ1063, Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C. (Tribhuvan University) Biratnagar, Nepal
| | - İbrahim G. Mamedov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, AZ1148, Baku, Azerbaijan
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Khalilov AN, Khrustalev VN, Samigullina AI, Akkurt M, Rzayev RM, Bhattarai A, Mamedov İG. Crystal structure and Hirshfeld surface analysis of ( E)-1-(2,4-di-methyl-furan-3-yl)-3-phenyl-prop-2-en-1-one. Acta Crystallogr E Crystallogr Commun 2023; 79:736-740. [PMID: 37601402 PMCID: PMC10439413 DOI: 10.1107/s2056989023006084] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Accepted: 07/10/2023] [Indexed: 08/22/2023]
Abstract
The title compound, C15H14O2, adopts an E configuration about the C=C double bond. The furan ring is inclined to the phenyl ring by 12.03 (9)°. In the crystal, pairs of mol-ecules are linked by C-H⋯O hydrogen bonds, forming dimers with R 2 2(14) ring motifs. The mol-ecules are connected via C-H⋯π inter-actions, forming a three dimensional network. No π-π inter-actions are observed.
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Affiliation(s)
- Ali N. Khalilov
- "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148, Baku, Azerbaijan
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St.6, Moscow, 117198, Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation
| | - Aida I. Samigullina
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Rovnag M. Rzayev
- "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
| | - İbrahim G. Mamedov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148, Baku, Azerbaijan
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Darwish AAA, Qashou SI, El-Zaidia EFM, El-Rahman KFA, Hamdalla TA, Al-Ghamdi SA, Alsharari AM, Khasim S, Alzahrani AOM, Yahia IS. Morphology, structural properties, impedance spectroscopy, AC conductivity, and dielectric relaxation properties of boron subphthalocyanine chloride amorphous films. PHYSICA SCRIPTA 2023; 98:065953. [DOI: 10.1088/1402-4896/acd5b4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
Abstract
Abstract
Through the use of thermal evaporation, boron subphthalocyanine chloride (B-subPcCl) films were created. X-ray diffraction pattern reveals that the B-subPcCl is characterized by amorphous nature, while atomic force microscopy images show that the surface topography of B-subPcCl is composed of homogeneous elliptical nanoparticles with grain size and roughness of 90 and 70 nm, respectively. The impedance measurements of B-subPcCl film at the temperature ranges of 298–398 K were studied and were fitted to the analog of a Rp//CPE equivalent electrical circuit model. The relationship between AC conductivity and frequency at different temperatures demonstrated that the correlated barrier hopping (CBH) model dominates the transport charge mechanism between the closest sites. The DC conductivity parameters were calculated, and they were compared with the relative organic compounds. The dependence of the dielectric constant (ε
1) and the dielectric loss (ε
1) on frequency showed a significant decrease of ε
1 and ε
2 values as the frequency increased. At different temperatures, the variation of the imaginary modulus (M
2) of B-subPcCl with frequency showed a relaxation process with an activation energy of 0.066 eV.
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