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Li Z, Cheng Z, Raghothama C, Cui Z, Liu K, Li X, Jiang C, Jiang W, Tan M, Ni X, Pandey A, Liu JO, Dang Y. USP9X controls translation efficiency via deubiquitination of eukaryotic translation initiation factor 4A1. Nucleic Acids Res 2019; 46:823-839. [PMID: 29228324 PMCID: PMC5778534 DOI: 10.1093/nar/gkx1226] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2017] [Accepted: 11/29/2017] [Indexed: 12/12/2022] Open
Abstract
Controlling translation initiation is an efficient way to regulate gene expression at the post-transcriptional level. However, current knowledge regarding regulatory proteins and their modes of controlling translation initiation is still limited. In this study, we employed tandem affinity purification and mass spectrometry to screen for unknown proteins associated with the translation initiation machinery. Ubiquitin specific peptidase 9, X-linked (USP9X), was identified as a novel binding partner, that interacts with the eukaryotic translation initiation factor 4B (eIF4B) in a mRNA-independent manner. USP9X-deficient cells presented significantly impaired nascent protein synthesis, cap-dependent translation initiation and cellular proliferation. USP9X can selectively alter the translation of pro-oncogenic mRNAs, such as c-Myc and XIAP. Moreover, we found that eIF4A1, which is primarily ubiquitinated at Lys-369, is the substrate of USP9X. USP9X dysfunction increases the ubiquitination of eIF4A1 and enhances its degradation. Our results provide evidence that USP9X is a novel regulator of the translation initiation process via deubiquitination of eIF4A1, which offers new insight in understanding the pivotal role of USP9X in human malignancies and neurodevelopmental disorders.
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Affiliation(s)
- Zengxia Li
- Key Laboratory of Molecular Medicine, Ministry of Education and Department of Biochemistry and Molecular Biology, Shanghai Medical College & Department of Pulmonary and Critical Care Medicine, Huashan Hospital, Fudan University, Shanghai 200032, China
| | - Zhao Cheng
- Key Laboratory of Molecular Medicine, Ministry of Education and Department of Biochemistry and Molecular Biology, Shanghai Medical College & Department of Pulmonary and Critical Care Medicine, Huashan Hospital, Fudan University, Shanghai 200032, China
| | - Chaerkady Raghothama
- McKusick-Nathans Institute of Genetic Medicine and the Department of Biological Chemistry, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Zhaomeng Cui
- Key Laboratory of Molecular Medicine, Ministry of Education and Department of Biochemistry and Molecular Biology, Shanghai Medical College & Department of Pulmonary and Critical Care Medicine, Huashan Hospital, Fudan University, Shanghai 200032, China
| | - Kaiyu Liu
- Key Laboratory of Molecular Medicine, Ministry of Education and Department of Biochemistry and Molecular Biology, Shanghai Medical College & Department of Pulmonary and Critical Care Medicine, Huashan Hospital, Fudan University, Shanghai 200032, China
| | - Xiaojing Li
- Key Laboratory of Molecular Medicine, Ministry of Education and Department of Biochemistry and Molecular Biology, Shanghai Medical College & Department of Pulmonary and Critical Care Medicine, Huashan Hospital, Fudan University, Shanghai 200032, China
| | - Chenxiao Jiang
- Key Laboratory of Molecular Medicine, Ministry of Education and Department of Biochemistry and Molecular Biology, Shanghai Medical College & Department of Pulmonary and Critical Care Medicine, Huashan Hospital, Fudan University, Shanghai 200032, China
| | - Wei Jiang
- Key Laboratory of Molecular Medicine, Ministry of Education and Department of Biochemistry and Molecular Biology, Shanghai Medical College & Department of Pulmonary and Critical Care Medicine, Huashan Hospital, Fudan University, Shanghai 200032, China
| | - Minjia Tan
- State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China
| | - Xiaohua Ni
- Key Laboratory of Reproduction Regulation of NPFPC, SIPPR, IAD, Fudan University, Shanghai 200032, China
| | - Akhilesh Pandey
- McKusick-Nathans Institute of Genetic Medicine and the Department of Biological Chemistry, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Jun O Liu
- Department of Pharmacology & Molecular Sciences and Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Yongjun Dang
- Key Laboratory of Molecular Medicine, Ministry of Education and Department of Biochemistry and Molecular Biology, Shanghai Medical College & Department of Pulmonary and Critical Care Medicine, Huashan Hospital, Fudan University, Shanghai 200032, China
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