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Wang Z, Duan L, Shuai D, Qiu T. Research on water environmental indicators prediction method based on EEMD decomposition with CNN-BiLSTM. Sci Rep 2024; 14:1676. [PMID: 38243034 PMCID: PMC10798991 DOI: 10.1038/s41598-024-51936-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 01/11/2024] [Indexed: 01/21/2024] Open
Abstract
Water resources protection is related to the development of the social economy, and the monitoring and prediction of water environmental indicators have important practical significance. In view of the seasonality, periodicity, uncertainty, and nonlinear characteristics of water quality indicators data, traditional prediction models have poor performance. To address this issue, this paper introduces a hybrid water quality index prediction model based on Ensemble Empirical Mode Decomposition (EEMD), combined with Convolutional Neural Network (CNN) and Bidirectional Long Short-Term Memory Network (BiLSTM). We have conducted out experiments to predict dissolved oxygen based on the water quality monitoring indicators of the Liaohe National Control Sanhongcun Village station in Yichun City. The results show that the model proposed in this paper improves the [Formula: see text] index by 5%, 7% and 5% compared to the suboptimal model in the 4-h, 1-day and 2-day index predictions, respectively.
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Affiliation(s)
- Zhaohua Wang
- School of Mathematics and Computer Sciences, Nanchang University, Nanchang, China
| | - Longzhen Duan
- School of Mathematics and Computer Sciences, Nanchang University, Nanchang, China
| | - Dongsheng Shuai
- Jiangxi Zhonggan Investment Survey and Design Limited Company, Nanchang, China
| | - Taorong Qiu
- School of Mathematics and Computer Sciences, Nanchang University, Nanchang, China.
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Understanding the complex interplay of persistent and antipersistent regimes in animal movement trajectories as a prominent characteristic of their behavioral pattern profiles: Towards an automated and robust model based quantification of anxiety test data. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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Bogachev M, Sinitca A, Grigarevichius K, Pyko N, Lyanova A, Tsygankova M, Davletshin E, Petrov K, Ageeva T, Pyko S, Kaplun D, Kayumov A, Mukhamedshina Y. Video-based marker-free tracking and multi-scale analysis of mouse locomotor activity and behavioral aspects in an open field arena: A perspective approach to the quantification of complex gait disturbances associated with Alzheimer's disease. Front Neuroinform 2023; 17:1101112. [PMID: 36817970 PMCID: PMC9932053 DOI: 10.3389/fninf.2023.1101112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Accepted: 01/12/2023] [Indexed: 02/05/2023] Open
Abstract
Introduction Complex gait disturbances represent one of the prominent manifestations of various neurophysiological conditions, including widespread neurodegenerative disorders such as Alzheimer's and Parkinson's diseases. Therefore, instrumental measurement techniques and automatic computerized analysis appears essential for the differential diagnostics, as well as for the assessment of treatment effectiveness from experimental animal models to clinical settings. Methods Here we present a marker-free instrumental approach to the analysis of gait disturbances in animal models. Our approach is based on the analysis of video recordings obtained with a camera placed underneath an open field arena with transparent floor using the DeeperCut algorithm capable of online tracking of individual animal body parts, such as the snout, the paws and the tail. The extracted trajectories of animal body parts are next analyzed using an original computerized methodology that relies upon a generalized scalable model based on fractional Brownian motion with parameters identified by detrended partial cross-correlation analysis. Results We have shown that in a mouse model representative movement patterns are characterized by two asymptotic regimes characterized by integrated 1/f noise at small scales and nearly random displacements at large scales separated by a single crossover. More detailed analysis of gait disturbances revealed that the detrended cross-correlations between the movements of the snout, paws and tail relative to the animal body midpoint exhibit statistically significant discrepancies in the Alzheimer's disease mouse model compared to the control group at scales around the location of the crossover. Discussion We expect that the proposed approach, due to its universality, robustness and clear physical interpretation, is a promising direction for the design of applied analysis tools for the diagnostics of various gait disturbances and behavioral aspects in animal models. We further believe that the suggested mathematical models could be relevant as a complementary tool in clinical diagnostics of various neurophysiological conditions associated with movement disorders.
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Affiliation(s)
- Mikhail Bogachev
- Centre for Digital Telecommunication Technologies, St. Petersburg Electrotechnical University “LETI”, St. Petersburg, Russia
- Institute for Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
| | - Aleksandr Sinitca
- Centre for Digital Telecommunication Technologies, St. Petersburg Electrotechnical University “LETI”, St. Petersburg, Russia
| | - Konstantin Grigarevichius
- Centre for Digital Telecommunication Technologies, St. Petersburg Electrotechnical University “LETI”, St. Petersburg, Russia
| | - Nikita Pyko
- Centre for Digital Telecommunication Technologies, St. Petersburg Electrotechnical University “LETI”, St. Petersburg, Russia
| | - Asya Lyanova
- Centre for Digital Telecommunication Technologies, St. Petersburg Electrotechnical University “LETI”, St. Petersburg, Russia
| | - Margarita Tsygankova
- Centre for Digital Telecommunication Technologies, St. Petersburg Electrotechnical University “LETI”, St. Petersburg, Russia
| | - Eldar Davletshin
- Institute for Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
| | - Konstantin Petrov
- FRC Kazan Scientific Center of RAS, Arbuzov Institute of Organic and Physical Chemistry, Kazan, Russia
| | - Tatyana Ageeva
- Institute for Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
| | - Svetlana Pyko
- Centre for Digital Telecommunication Technologies, St. Petersburg Electrotechnical University “LETI”, St. Petersburg, Russia
| | - Dmitrii Kaplun
- Centre for Digital Telecommunication Technologies, St. Petersburg Electrotechnical University “LETI”, St. Petersburg, Russia
| | - Airat Kayumov
- Institute for Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
| | - Yana Mukhamedshina
- Institute for Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
- Department of Histology, Cytology and Embryology, Kazan State Medical University, Kazan, Russia
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Machine learning approach towards explaining water quality dynamics in an urbanised river. Sci Rep 2022; 12:12346. [PMID: 35854053 PMCID: PMC9295889 DOI: 10.1038/s41598-022-16342-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 07/08/2022] [Indexed: 11/08/2022] Open
Abstract
Human activities alter river water quality and quantity, with consequences for the ecosystems of urbanised rivers. Quantifying the role of human-induced drivers in controlling spatio-temporal patterns in water quality is critical to develop successful strategies for improving the ecological health of urban rivers. Here, we analyse high-frequency electrical conductivity and temperature data collected from the River Chess in South-East England during a Citizen Science project. Utilizing machine learning, we find that boosted trees outperform GAM and accurately describe water quality dynamics with less than 1% error. SHapley Additive exPlanations reveal the importance of and the (inter)dependencies between the individual variables, such as river level and Wastewater Treatment Works (WWTW) outflow. WWTW outflows give rise to diurnal variations in electrical conductivity, which are detectable throughout the year, and to an increase in average water temperature of 1 [Formula: see text] in a 2 km reach downstream of the wastewater treatment works during low flows. Overall, we showcase how high-frequency water quality measurements initiated by a Citizen Science project, together with machine learning techniques, can help untangle key drivers of water quality dynamics in an urbanised chalk stream.
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Schäfer B, Heppell CM, Rhys H, Beck C. Monitoring water quality: A citizen science success story. iScience 2021; 24:103267. [PMID: 34761187 PMCID: PMC8567377 DOI: 10.1016/j.isci.2021.103267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Affiliation(s)
- Benjamin Schäfer
- School of Mathematical Sciences, Queen Mary University of London, London E1 4NS, UK.,Faculty of Science and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway
| | - Catherine M Heppell
- School of Geography, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | - Hefin Rhys
- Flow Cytometry Science Technology Platform, The Francis Crick Institute, London, UK
| | - Christian Beck
- School of Mathematical Sciences, Queen Mary University of London, London E1 4NS, UK.,Alan Turing Institute, London NW1 2DB, UK
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