Real-time quantitative PCR assay for analysis of platelet glycoprotein IIIa gene expression

Small Nuclear RNAs (U1, U2, U5) in Tumor-Educated Platelets Are Downregulated and Act as Promising Biomarkers in Lung Cancer

Background

Small nuclear RNA (snRNA) levels are extremely variable across a wide range of biological conditions. SnRNAs could potentially regulate alternative splicing to drive genetic, dysplastic and neoplastic disease, which might be the main reason for mRNA profile alteration in tumor educated platelets (TEPs).

Methods

Platelets were isolated from the plasma of lung cancer patients and healthy donors by low-speed centrifugation and subjected to RNA isolation. SnRNA U1, U2, U5 levels were detected by quantitative real-time polymerase chain reaction (qRT-PCR). Exosomes were isolated by ultracentrifugation and identified by qNano.

Results

TEP U1, U2, U5 levels were significantly decreased in patients with lung cancer as well as with early stage patients, their downregulation was correlated with lung cancer progression, possessing favorable diagnostic efficiency. More importantly, TEP U1, U2 and U5 levels were closely correlated between paired exosomes and TEP from treated patients but not from untreated ones, and U1, U5 but not U2 in platelets were elevated by apo-exosomes.

Conclusion

Tumor educated platelet small nuclear RNAs are downregulated and act as promising biomarkers in lung cancer.

Platelet glycoprotein IIIa gene expression in normal and malignant megakaryopoiesis

The platelet glycoprotein GPIIb/IIIa functions as a receptor for fibrinogen in platelet aggregation process and is an example of an early megakaryocytic marker. One of a chronic myeloproliferative disorder, essential thrombocythemia, is caused by abnormal megakaryopoiesis. Due to the lack of reliable method for the diagnosis of that disease and the importance of GPIIIa as a marker for identifying early megakaryocytes, the expression level of GPIIIa in mononuclear and CD34(+) cells and during megakaryopoiesis was compared between normal individuals and patients with essential thrombocythemia. For this purpose, surface markers GPIIIa and CD34 were analyzed with flow cytometer, and GPIIIa expression level was measured with real-time polymerase chain reaction (PCR) method. Mononuclear and CD34(+) cells from normal individuals and patients were isolated, analyzed, and seeded into serum-free medium Stemspantrade mark Medium enriched with IL-6, IL-3, thrombopoietin, and stem cell factor. The difference between normal individuals and patients was noticed in the expression level of GPIIIa in the CD34(+) cells and in the time course of cell surface markers. CD34(+) cells from patients has 33% higher of GPIIIa antigens on the surface and 34% higher GPIIIa messenger RNA (mRNA) expression level. The negative effect of IL-3 on the maturation of megakaryocytes was not noticed; there were 56.46% of megakaryoblasts at the end of the cultivation, and after 14 days of culturing, 111.09 times increase of GPIIIa mRNA in patients was detected. This study is therefore offering the method that could serve as reliable tool for discriminating ET from other similar myeloproliferative disorders.

Validation of quantitative polymerase chain reaction assays for measuring cytokine expression in equine macrophages

The study of the equine immune system and inflammatory responses, by measuring cytokine expression, can provide important insight into disease pathogenesis in the horse. A set of quantitative real-time polymerase chain reaction (QPCR) assays for the equine cytokines IL-1alpha, IL-1beta, IL-6, IL-8 and TNF-alpha were validated using QPCR primers and probes which were generated for the equine IL-1alpha, IL-1beta, IL-6, IL-8, TNF-alpha and 18S genes. Amplification efficiency, intra-assay and inter-assay variation were determined using 10-fold dilutions of plasmid for each gene. Under these conditions the amplification efficiencies of the primers and probes ranged from 99% to 101%. The mean coefficient of variation (CV) across five sets of plasmid DNA for both intra-assay and inter-assay variation was 0.63% (range 0.2% to 1.8%). Amplification efficiency was also determined using 2-fold dilutions of cDNA and under these conditions amplification efficiency ranged from 83% to 95%. The specificity of amplification was confirmed by DNA sequencing of reaction products. The QPCR assays were also evaluated using three sets of cDNA from equine monocyte derived macrophages (EMDM) stimulated for 1 h with lipopolysaccharide (LPS). The general trend was the same for all three samples with IL-1alpha showing the greatest induction and IL-6 the lowest induction. The range of cytokine induction was greater than has previously been reported with values ranging from 12-fold to 30,000-fold. We present a set of QPCR primers and probes that are suitable for quantitation of expression of a set of equine cytokines. The primers and probes have been rigorously analyzed, and we demonstrate that they are specific for the desired genes, have a high amplification efficiency and the assays are highly reproducible.