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Vatta M, Regalado E, Parfenov M, Swartzlander D, Nagl A, Mannello M, Lewis R, Clemens D, Garcia J, Ellsworth RE, Morales A, Ting YL, Aradhya S. Analysis of TTN Truncating Variants in >74 000 Cases Reveals New Clinically Relevant Gene Regions. CIRCULATION. GENOMIC AND PRECISION MEDICINE 2025; 18:e004982. [PMID: 39968638 PMCID: PMC11999099 DOI: 10.1161/circgen.124.004982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2024] [Accepted: 12/20/2024] [Indexed: 02/20/2025]
Abstract
BACKGROUND Truncating variants (TTNtvs) in the titin (TTN) gene have been associated with cardiomyopathies or arrhythmias (C/A) and autosomal recessive neuromuscular diseases (NM). However, the clinical significance of TTNtvs across the entire coding sequence of TTN has not been comprehensively assessed. The purpose of this study was to examine the burden of TTNtvs in C/A and NM cases compared with controls in the genome aggregation database. METHODS This was a retrospective study of probands who underwent multigene testing (49 740 C/A panel, 24 514 NM panel) that included TTN from November 2017 to October 2021. Burden testing was performed using controls in the genome aggregation database v3.1.2 database, and the analysis was stratified by exon/band location and exon usage in cardiac or skeletal muscle. Frequency and odds ratio of TTNtv alleles in C/A or NM cases and genome aggregation database controls were measured. RESULTS There were 2446 (4.9%) C/A and 482 (2.0%) NM cases with 2446 and 528 TTNtv alleles, respectively. TTNtvs in all bands were significantly enriched in both C/A and NM cases compared with controls. A significant enrichment of TTNtvs in C/A was observed for exon 358 of the M-band (odds ratio, 2.55 [95% CI, 1.85-3.54]) but not the other M-band exons. CONCLUSIONS In the largest single-site cohort of C/A and NM cases with TTNtvs, an enrichment of TTNtvs across TTN was observed. These findings expand the clinically relevant regions of TTN.
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Affiliation(s)
- Matteo Vatta
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Ellen Regalado
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Michael Parfenov
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Dan Swartzlander
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Andrea Nagl
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Meghan Mannello
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Rachel Lewis
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Daniel Clemens
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - John Garcia
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Rachel E. Ellsworth
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Ana Morales
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Yi-Lee Ting
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
| | - Swaroop Aradhya
- Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.)
- Department of Pathology, Stanford University School of Medicine, CA (S.A.)
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Dai Y, Wang Y, Fan Y, Han B. Genotype-phenotype insights of pediatric dilated cardiomyopathy. Front Pediatr 2025; 13:1505830. [PMID: 39959410 PMCID: PMC11825472 DOI: 10.3389/fped.2025.1505830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/03/2024] [Accepted: 01/21/2025] [Indexed: 02/18/2025] Open
Abstract
Dilated cardiomyopathy (DCM) in children is a severe myocardial disease characterized by enlargement of the left ventricle or both ventricles with impaired contractile function. DCM can cause adverse consequences such as heart failure, sudden death, thromboembolism, and arrhythmias. This article reviews the latest advances in genotype and phenotype research in pediatric DCM. With the development of gene sequencing technologies, considerable progress has been made in genetic research on DCM. Research has shown that DCM exhibits notable genetic heterogeneity, with over 100 DCM-related genes identified to date, primarily involving functions such as calcium handling, the cytoskeleton, and ion channels. As human genomic variations are linked to phenotypes, DCM phenotypes are influenced by numerous genetic variations across the entire genome. Children with DCM display high genetic heterogeneity and are characterized by early onset, rapid disease progression, and poor prognosis. The genetic architecture of pediatric DCM markedly differs from that of adult DCM, necessitating analyses through clinical phenotyping, familial cosegregation studies, and functional validation. Clarifying the genotype-phenotype relationship can improve diagnostic accuracy, enhance prognosis, and guide follow-up treatment for genotype-positive and phenotype-negative patients identified through genetic testing, providing new insights for precision medicine. Future research should further explore novel pathogenic genes and mutations and strengthen genotype-phenotype correlation analyses to facilitate precise diagnosis and treatment of DCM in children.
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Affiliation(s)
| | | | - Youfei Fan
- Department of Pediatrics, Shandong Province Hospital Affiliated to Shandong First Medical University, Jinan, Shandong, China
| | - Bo Han
- Department of Pediatrics, Shandong Province Hospital Affiliated to Shandong First Medical University, Jinan, Shandong, China
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Flensted IF, Stemmerik MG, Skriver SV, Axelsen KH, Christensen AH, Lundby C, Bundgaard H, Vissing J, Vissing CR. Exercise training improves cardiovascular fitness in dilated cardiomyopathy caused by truncating titin variants. Heart 2024; 110:1416-1425. [PMID: 39317439 DOI: 10.1136/heartjnl-2024-323995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 09/02/2024] [Indexed: 09/26/2024] Open
Abstract
BACKGROUND Participation in regular exercise activities is recommended for patients with chronic heart failure. However, less is known about the effect of exercise in patients with genetic dilated cardiomyopathy (DCM). We sought to examine the effect of vigorousintensity training on physical capacity in patients with DCM caused by truncating titin variants (TTNtv). TRIAL DESIGN Non-randomised clinical pre-post trial of exercise training. METHODS Individuals with DCM-TTNtv were included from outpatient clinics for inherited cardiac diseases. The trial consisted of 8 weeks of usual care followed by 8 weeks of regular vigorous-intensity cycling exercise, enclosed by three test days. The primary outcome was change in peak oxygen uptake (VO2). Secondary outcomes included change in blood volume, total haemoglobin mass, measures of systolic function and cardiac output/stroke volume during exercise. RESULTS Thirteen out of 14 included participants (43% women, age 48±11 years, body mass index: 30±6 kg/m2) completed the trial. In the exercise training period, peak VO2 increased by +1.9 mL/kg/min (95% CI +0.9 to +2.9, p=0.002). Compared with usual care, exercise training improved peak VO2 by +2.9 mL/kg/min (95% CI +1.2 to +4.5, p=0.002), corresponding to a 10% increase. Adaptations to exercise training included an increase in resting cardiac output (+0.8 L/min, p=0.042), total blood volume (+713 mL, p<0.001), total haemoglobin mass (+73 g, p<0.001), and improved left ventricular (LV) systolic function (LV ejection fraction: +3.2% (p=0.053) and global longitudinal strain: -2.0% (p=0.044)). No exercise-related adverse events or change in plasma biomarkers of cardiac or skeletal muscle damage were observed. CONCLUSIONS Our study shows that vigorous intensity exercise training improved peak VO2 in patients with DCM-TTNtv. Exercise training was associated with improved LV systolic function and increased blood volume and oxygen carrying capacity. Future research should investigate the effect of long-term exercise in this group. TRIAL REGISTRATION NUMBER NCT05180188.
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Affiliation(s)
| | | | | | | | - Alex Hørby Christensen
- Department of Cardiology, Herlev Hospital, Herlev, Denmark
- Department of Cardiology, Rigshospitalet, Copenhagen, Denmark
| | - Carsten Lundby
- Center for Physical Activity Research, Copenhagen University Hospital, Kobenhavn, Denmark
| | | | - John Vissing
- Department of Neurology, Rigshospitalet, Copenhagen, Denmark
| | - Christoffer Rasmus Vissing
- Department of Cardiology, Rigshospitalet, Copenhagen, Denmark
- Department of Cardiology, Hvidovre Hospital, Hvidovre, Denmark
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Gohlke J, Lindqvist J, Hourani Z, Rich K, Arnold WD, Heintzman S, Tonino P, Elsheikh B, Morales A, Vatta M, Burghes A, Granzier H, Roggenbuck J. Pathomechanisms of Monoallelic variants in TTN causing skeletal muscle disease. Hum Mol Genet 2024; 33:2003-2023. [PMID: 39277846 PMCID: PMC11578113 DOI: 10.1093/hmg/ddae136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 07/01/2024] [Accepted: 09/06/2024] [Indexed: 09/17/2024] Open
Abstract
Pathogenic variants in the titin gene (TTN) are known to cause a wide range of cardiac and musculoskeletal disorders, with skeletal myopathy mostly attributed to biallelic variants. We identified monoallelic truncating variants (TTNtv), splice site or internal deletions in TTN in probands with mild, progressive axial and proximal weakness, with dilated cardiomyopathy frequently developing with age. These variants segregated in an autosomal dominant pattern in 7 out of 8 studied families. We investigated the impact of these variants on mRNA, protein levels, and skeletal muscle structure and function. Results reveal that nonsense-mediated decay likely prevents accumulation of harmful truncated protein in skeletal muscle in patients with TTNtvs. Splice variants and an out-of-frame deletion induce aberrant exon skipping, while an in-frame deletion produces shortened titin with intact N- and C-termini, resulting in disrupted sarcomeric structure. All variant types were associated with genome-wide changes in splicing patterns, which represent a hallmark of disease progression. Lastly, RNA-seq studies revealed that GDF11, a member of the TGF-β superfamily, is upregulated in diseased tissue, indicating that it might be a useful therapeutic target in skeletal muscle titinopathies.
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Affiliation(s)
- Jochen Gohlke
- Department of Cellular and Molecular Medicine, University of Arizona, 1656 E. Mabel St., Tucson, AZ 85724, United States
| | - Johan Lindqvist
- Department of Cellular and Molecular Medicine, University of Arizona, 1656 E. Mabel St., Tucson, AZ 85724, United States
| | - Zaynab Hourani
- Department of Cellular and Molecular Medicine, University of Arizona, 1656 E. Mabel St., Tucson, AZ 85724, United States
| | - Kelly Rich
- Harvard Medical School Department of Genetics - Blavatnik Institute 77 Avenue Louis Pasteur, Boston MA, 02115 USA
| | - W David Arnold
- Department of Physical Medicine and Rehabilitation, University of Missouri, Columbia, MO, USA; NextGen Precision Health, University of Missouri, Columbia, MO, USA; Department of Medical Pharmacology and Physiology, University of Missouri, Columbia, MO, USA; Department of Neurology, University of Missouri, Columbia, MO, USA
| | - Sarah Heintzman
- Department of Neurology, The Ohio State University Wexner Medical Center, 395 W. 12th Ave, Columbus, OH 43210, United States
| | - Paola Tonino
- Research, Innovation and Impact Core Facilities Department, University of Arizona, 1333 N. Martin Ave, Tucson, AZ 85719, United States
| | - Bakri Elsheikh
- Department of Neurology, The Ohio State University Wexner Medical Center, 395 W. 12th Ave, Columbus, OH 43210, United States
| | - Ana Morales
- Invitae Corporation, 1400 16th St., San Francisco, CA 94103, United States
| | - Matteo Vatta
- Invitae Corporation, 1400 16th St., San Francisco, CA 94103, United States
| | - Arthur Burghes
- Department of Biological Chemistry and Pharmacology, The Ohio State University Wexner Medical Center, 370 W 9th Ave, Columbus, OH 43210, United States
| | - Henk Granzier
- Department of Cellular and Molecular Medicine, University of Arizona, 1656 E. Mabel St., Tucson, AZ 85724, United States
| | - Jennifer Roggenbuck
- Department of Neurology, The Ohio State University Wexner Medical Center, 395 W. 12th Ave, Columbus, OH 43210, United States
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