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Dashora K, Gattupalli M, Javed Z, Tripathi GD, Sharma R, Mishra M, Bhargava A, Srivastava S. Leveraging multiomics approaches for producing lignocellulose degrading enzymes. Cell Mol Life Sci 2022; 79:132. [PMID: 35152331 PMCID: PMC11072819 DOI: 10.1007/s00018-022-04176-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Revised: 12/16/2021] [Accepted: 01/25/2022] [Indexed: 11/03/2022]
Abstract
Lignocellulosic materials form the building block of 50% of plant biomass comprising non-chewable agri-components like wheat straw, rice stubbles, wood shavings and other crop residues. The degradation of lignin, cellulose and hemicellulose is complicated and presently being done by chemical process for industrial application through a very energy intensive process. Lignin degradation is primarily an oxidative process where the enzyme lignin peroxidase digests the polymer into smaller fragments. Being a recalcitrant component, higher lignin content poses a challenge of lower recovery of product for industrial use. Globally, the scientists are working on leveraging fungal biotechnology for using the lignocellulose degrading enzymes secreted by actinomycetes and basidiomycetes fungal groups. Enzymes contributing to degradation of lignin are mainly performing the function of modifying the lignin and degrading the lignin. Ligninolytic enzymes do not act as an independent reaction but are vital to complete the degradation process. Microbial enzyme technology is an emerging green tool in industrial biotechnology for commercial application. Bioprocessing of lignocellulosic biomass is challenged by limitations in enzymatic and conversion process where pretreatment and separation steps are done to remove lignin and hydrolyze carbohydrate into fermentable sugars. This review highlights recent advances in molecular biotechnology, lignin valorization, sequencing, decipher microbial membership, and characterize enzyme diversity through 'omics' techniques. Emerging techniques to characterize the interwoven metabolism and spatial interactions between anaerobes are also reviewed, which will prove critical to developing a predictive understanding of anaerobic communities to guide in microbiome engineering This requires more synergistic collaborations from microbial biotechnologists, bioprocess engineers, enzymologists, and other biotechnological fields.
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Affiliation(s)
- Kavya Dashora
- Centre for Rural Development and Technology, Indian Institute of Technology, Delhi, India.
| | - Meghana Gattupalli
- Centre for Rural Development and Technology, Indian Institute of Technology, Delhi, India
| | - Zoya Javed
- Centre for Rural Development and Technology, Indian Institute of Technology, Delhi, India
| | - Gyan Datta Tripathi
- Centre for Rural Development and Technology, Indian Institute of Technology, Delhi, India
| | - Ruchi Sharma
- Centre for Rural Development and Technology, Indian Institute of Technology, Delhi, India
| | - Mansi Mishra
- Centre for Rural Development and Technology, Indian Institute of Technology, Delhi, India
| | - Atul Bhargava
- Department of Botany, Mahatma Gandhi Central University, Bihar, India
| | - Shilpi Srivastava
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Lucknow, India
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CARVALHO CATHERINETDE, OLIVEIRA JÚNIOR SÉRGIODDE, LIMA WILDSONBDEBRITO, MEDEIROS FÁBIOGMACÊDODE, LEITÃO ANALAURAODESÁ, DANTAS JULIAM, SANTOS EVERALDOSDOS, MACÊDO GORETERDE, SOUSA JÚNIOR FRANCISCOCDE. Recovery of β-galactosidase produced by Kluyveromyces lactis by ion-exchange chromatography: Influence of pH and ionic strength parameters. AN ACAD BRAS CIENC 2022; 94:e20200752. [DOI: 10.1590/0001-3765202220200752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Accepted: 08/28/2020] [Indexed: 11/22/2022] Open
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Separation of recombinant monoclonal antibodies IgG201 from a cell culture supernatant using an integrated aqueous two-phase system with thermo-separating EOPO. Sep Purif Technol 2021. [DOI: 10.1016/j.seppur.2021.119246] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Kalathinathan P, Kodiveri Muthukaliannan G. A statistical approach for enhanced production of β-galactosidase from Paracoccus sp. and synthesis of galacto-oligosaccharides. Folia Microbiol (Praha) 2020; 65:811-822. [DOI: 10.1007/s12223-020-00791-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2019] [Accepted: 04/13/2020] [Indexed: 12/11/2022]
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Leitão ALODS, Caldas MCB, Eduardo de Araújo Padilha C, Nogueira da Costa C, Rocha PM, Canindé de Sousa Junior F, Ribeiro de Macedo G, Silvino dos Santos E. Recovery and purification of 503 antigen from Leishmania i. chagasi with simultaneous removal of lipopolysaccharides: Influence of immobilized metals and elution strategies during expanded bed adsorption (EBA). J LIQ CHROMATOGR R T 2019. [DOI: 10.1080/10826076.2019.1565829] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
| | | | | | | | - Patrícia Maria Rocha
- Departamento de Engenharia Química, Universidade Federal do Rio Grande do Norte, Natal, Brazil
| | - Francisco Canindé de Sousa Junior
- Departamento de Engenharia Química, Universidade Federal do Rio Grande do Norte, Natal, Brazil
- Departamento de Farmácia, Universidade Federal do Rio Grande do Norte, Natal, Brazil
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Brassesco ME, Woitovich Valetti N, Picó G. Molecular mechanism of lysozyme adsorption onto chemically modified alginate guar gum matrix. Int J Biol Macromol 2017; 96:111-117. [DOI: 10.1016/j.ijbiomac.2016.12.029] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Revised: 10/17/2016] [Accepted: 12/12/2016] [Indexed: 11/25/2022]
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de Araújo Padilha CE, de Araújo Padilha CA, de Santana Souza DF, de Oliveira JA, de Macedo GR, dos Santos ES. Recurrent neural network modeling applied to expanded bed adsorption chromatography of chitosanases produced by Paenibacillus ehimensis. Chem Eng Res Des 2017. [DOI: 10.1016/j.cherd.2016.09.022] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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de Araújo Padilha CE, Fortunato Dantas PV, de sousa FC, de Santana Souza DF, de Oliveira JA, de Macedo GR, dos Santos ES. Mathematical modeling of the whole expanded bed adsorption process to recover and purify chitosanases from the unclarified fermentation broth of Paenibacillus ehimensis. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1039:44-50. [DOI: 10.1016/j.jchromb.2016.10.027] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2016] [Revised: 10/17/2016] [Accepted: 10/23/2016] [Indexed: 12/25/2022]
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Ravindran R, Jaiswal AK. Microbial Enzyme Production Using Lignocellulosic Food Industry Wastes as Feedstock: A Review. Bioengineering (Basel) 2016; 3:E30. [PMID: 28952592 PMCID: PMC5597273 DOI: 10.3390/bioengineering3040030] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Revised: 11/09/2016] [Accepted: 11/11/2016] [Indexed: 11/17/2022] Open
Abstract
Enzymes are of great importance in the industry due to their substrate and product specificity, moderate reaction conditions, minimal by-product formation and high yield. They are important ingredients in several products and production processes. Up to 30% of the total production cost of enzymes is attributed to the raw materials costs. The food industry expels copious amounts of processing waste annually, which is mostly lignocellulosic in nature. Upon proper treatment, lignocellulose can replace conventional carbon sources in media preparations for industrial microbial processes, such as enzyme production. However, wild strains of microorganisms that produce industrially important enzymes show low yield and cannot thrive on artificial substrates. The application of recombinant DNA technology and metabolic engineering has enabled researchers to develop superior strains that can not only withstand harsh environmental conditions within a bioreactor but also ensure timely delivery of optimal results. This article gives an overview of the current complications encountered in enzyme production and how accumulating food processing waste can emerge as an environment-friendly and economically feasible solution for a choice of raw material. It also substantiates the latest techniques that have emerged in enzyme purification and recovery over the past four years.
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Affiliation(s)
- Rajeev Ravindran
- School of Food Science and Environmental Health, College of Sciences and Health, Dublin Institute of Technology, Cathal Brugha Street, Dublin D01 HV58, Ireland.
| | - Amit K Jaiswal
- School of Food Science and Environmental Health, College of Sciences and Health, Dublin Institute of Technology, Cathal Brugha Street, Dublin D01 HV58, Ireland.
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de Araújo Padilha CE, de Araújo NK, de Santana Souza DF, de Oliveira JA, de Macedo GR, dos Santos ES. Modeling and simulation of Bacillus cereus chitosanase activity during purification using expanded bed chromatography. KOREAN J CHEM ENG 2016. [DOI: 10.1007/s11814-016-0127-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Lima MDA, Freitas MDFMD, Gonçalves LRB, Silva Junior IJD. Recovery and purification of a Kluyvermyces lactis β-galactosidase by Mixed Mode Chromatography. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1015-1016:181-191. [PMID: 26927878 DOI: 10.1016/j.jchromb.2016.01.053] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2015] [Revised: 01/28/2016] [Accepted: 01/31/2016] [Indexed: 11/25/2022]
Abstract
Mixed Mode Chromatography (MMC) is a potential separation technique that allows simultaneous ionic and hydrophobic interactions between the adsorbent and the adsorbate. The aim of this work was to assess the recovery and purification of a Kluyveromyces lactis β-galactosidase employing MMC. Protein precipitation and dialysis were performed in order to concentrate the enzyme of interest and eliminate cell debris and other interferences inherent in the fermentation medium. The best conditions for both adsorption and desorption were attained by a non-factorial Central Composite Experimental Design and employed in the chromatographic runs with resin CAPTO MMC. Fermentation yielded mean values of total enzyme concentration of 0.44 mg/mL, enzymatic activity (employing lactose as a substrate) of 74 U/mL and specific activity of 168 U/mg. The Purification Factor (PF) obtained was of 1.17. After precipitation and dialysis, the subsequent chromatographic run resulted in recovery values of 41.0 and 48.2% of total protein concentration and enzymatic activity, respectively. SDS-PAGE electrophoresis confirmed the purification evolution throughout the unit operations employed, attesting the feasibility of the technique to obtain enzymes with not only considerable degree of purity but also possessing high-added value.
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Affiliation(s)
- Micael de Andrade Lima
- Universidade Federal do Ceará, Departamento de Engenharia Química, Campus do Pici, S/N-Bloco 709-CEP, Ramal 206, 60455-760 Fortaleza, CE, Brazil
| | - Maria de Fátima Matos de Freitas
- Universidade Federal do Ceará, Departamento de Engenharia Química, Campus do Pici, S/N-Bloco 709-CEP, Ramal 206, 60455-760 Fortaleza, CE, Brazil
| | - Luciana Rocha Barros Gonçalves
- Universidade Federal do Ceará, Departamento de Engenharia Química, Campus do Pici, S/N-Bloco 709-CEP, Ramal 206, 60455-760 Fortaleza, CE, Brazil
| | - Ivanildo José da Silva Junior
- Universidade Federal do Ceará, Departamento de Engenharia Química, Campus do Pici, S/N-Bloco 709-CEP, Ramal 206, 60455-760 Fortaleza, CE, Brazil.
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de Araújo NK, Pimentel VC, da Silva NMP, de Araújo Padilha CE, de Macedo GR, dos Santos ES. Recovery and purification of chitosanase produced byBacillus cereususing expanded bed adsorption and central composite design. J Sep Sci 2016; 39:709-16. [DOI: 10.1002/jssc.201500900] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2015] [Revised: 10/20/2015] [Accepted: 11/09/2015] [Indexed: 12/13/2022]
Affiliation(s)
- Nathália Kelly de Araújo
- Department of Chemical Engineering, Technology Center; Universidade Federal do Rio Grande do Norte; Natal Rio Grande do Norte Brazil
| | - Vanessa Carvalho Pimentel
- Department of Chemical Engineering, Technology Center; Universidade Federal do Rio Grande do Norte; Natal Rio Grande do Norte Brazil
| | - Nayane Macedo Portela da Silva
- Department of Chemical Engineering, Technology Center; Universidade Federal do Rio Grande do Norte; Natal Rio Grande do Norte Brazil
| | - Carlos Eduardo de Araújo Padilha
- Department of Chemical Engineering, Technology Center; Universidade Federal do Rio Grande do Norte; Natal Rio Grande do Norte Brazil
| | - Gorete Ribeiro de Macedo
- Department of Chemical Engineering, Technology Center; Universidade Federal do Rio Grande do Norte; Natal Rio Grande do Norte Brazil
| | - Everaldo Silvino dos Santos
- Department of Chemical Engineering, Technology Center; Universidade Federal do Rio Grande do Norte; Natal Rio Grande do Norte Brazil
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Araújo NKD, Pagnoncelli MGB, Pimentel VC, Xavier MLO, Padilha CEA, Macedo GRD, Santos ESD. Single-step purification of chitosanases from Bacillus cereus using expanded bed chromatography. Int J Biol Macromol 2016; 82:291-8. [DOI: 10.1016/j.ijbiomac.2015.09.063] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Revised: 09/25/2015] [Accepted: 09/28/2015] [Indexed: 01/19/2023]
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Sediq AS, Nejadnik MR, El Bialy I, Witkamp GJ, Jiskoot W. Protein–polyelectrolyte interactions: Monitoring particle formation and growth by nanoparticle tracking analysis and flow imaging microscopy. Eur J Pharm Biopharm 2015; 93:339-45. [DOI: 10.1016/j.ejpb.2015.04.021] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2015] [Revised: 03/24/2015] [Accepted: 04/22/2015] [Indexed: 11/24/2022]
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Kakarla PB, DSouza RN, Toots U, Fernández-Lahore M. Interactions of Chinese Hamster Ovary (CHO) cell cultures with second generation expanded bed adsorbents. Sep Purif Technol 2015. [DOI: 10.1016/j.seppur.2015.02.014] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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16
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de Sousa Junior FC, Vaz MRF, de Araújo Padilha CE, Chibério AS, Martins DRA, de Macedo GR, dos Santos ES. Recovery and purification of recombinant 503 antigen of Leishmania infantum chagasi using expanded bed adsorption chromatography. J Chromatogr B Analyt Technol Biomed Life Sci 2015; 986-987:1-7. [DOI: 10.1016/j.jchromb.2015.01.031] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2014] [Revised: 01/14/2015] [Accepted: 01/24/2015] [Indexed: 10/27/2022]
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Lin DQ, Shi W, Tong HF, van de Sandt EJAX, Boer PD, Ferreira GNM, Yao SJ. Evaluation and characterization of axial distribution in expanded bed: II. Liquid mixing and local effective axial dispersion. J Chromatogr A 2015; 1393:65-72. [PMID: 25817706 DOI: 10.1016/j.chroma.2015.03.019] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Revised: 03/03/2015] [Accepted: 03/07/2015] [Indexed: 11/30/2022]
Abstract
Expanded bed adsorption (EBA) is a promising technology to capture proteins directly from unclarified feedstock. In order to better understand liquid mixing along the bed height in expanded beds, an in-bed sampling method was used to measure residence time distribution at different bed heights. A 2cm diameter nozzle column was tested with agarose raw beads (3% crosslinked agarose containing tungsten carbide). Two settled bed heights (11.5 and 23.1cm) with different expansion factors (1.4-2.6) were investigated and the number of theoretical plates (N), the height equivalent of theoretical plate (HETP) and the local effective axial dispersion coefficient (Dax) were calculated for each bed height-defined zone. The effects of expansion factor, settled bed height and mobile phase were evaluated. The results showed that N increased with the increase of expansion factors, but Dax was unaffected under fixed bed heights. Dax and HETP were found similar as a function of relative bed height for two settled bed heights tested. Higher mobile phase viscosity resulted in stronger axial dispersion. In addition, the local effective Dax under the expansion factor near 2.0 had a different profile which showed minimum values at 0.6-0.8 relative bed height, and the potential mechanism was discussed. These results would be useful for the characterization of axial dispersion and modeling protein adsorption in expanded beds under varying operation conditions.
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Affiliation(s)
- Dong-Qiang Lin
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.
| | - Wei Shi
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China
| | - Hong-Fei Tong
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China
| | - Emile J A X van de Sandt
- DSM Biotechnology Center, Center of Integrated BioProcessing, Alexander Fleminglaan 1, 2613 AX Delft, The Netherlands.
| | - Piet den Boer
- Patheon Biologics, Zuiderweg 72/2, 9744 AP Groningen, The Netherlands
| | - Guilherme N M Ferreira
- DSM Biotechnology Center, Center of Integrated BioProcessing, Alexander Fleminglaan 1, 2613 AX Delft, The Netherlands
| | - Shan-Jing Yao
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China
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Fan QH, Claunch KA, Striegler S. Structure–Activity Relationship of Highly Potent Galactonoamidine Inhibitors toward β-Galactosidase (Aspergillus oryzae). J Med Chem 2014; 57:8999-9009. [PMID: 25295392 DOI: 10.1021/jm501111y] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Qiu-Hua Fan
- Department of Chemistry and
Biochemistry, University of Arkansas, 345 North Campus Drive, Fayetteville, Arkansas 72701, United States
| | - Kailey A. Claunch
- Department of Chemistry and
Biochemistry, University of Arkansas, 345 North Campus Drive, Fayetteville, Arkansas 72701, United States
| | - Susanne Striegler
- Department of Chemistry and
Biochemistry, University of Arkansas, 345 North Campus Drive, Fayetteville, Arkansas 72701, United States
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Lombardi J, Woitovich Valetti N, Picó G, Boeris V. Obtainment of a highly concentrated pancreatic serine proteases extract from bovine pancreas by precipitation with polyacrylate. Sep Purif Technol 2013. [DOI: 10.1016/j.seppur.2013.05.047] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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