1
|
Tüçer ME, Tunç N, Tüçer S, Acar R, Usta DD, Salimi K, Konu Ö, Şeker UÖŞ. Transcriptomic investigation of NP toxicity on HepaRG spheroids. Chem Biol Interact 2025; 405:111303. [PMID: 39515631 DOI: 10.1016/j.cbi.2024.111303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Revised: 10/11/2024] [Accepted: 10/30/2024] [Indexed: 11/16/2024]
Abstract
Metal nanoparticles (NPs) are commonly used nanomaterials, however concerns have been raised about their toxicity. Although a few studies have reported the toxicity of NPs on cells, they have generally been restricted to a limited variety of NPs, inappropriate cell lines, or culture methods. Thus, the adverse effects remain inadequately understood, necessitating further analysis. This study focuses on assessing the impacts of diverse NPs of varying materials and sizes on HepaRG spheroids to determine the genes that respond to acute NP toxicity. HepaRG cells, the most appropriate alternative to primary hepatocytes, were cultured in 3D spheroids to better mimic the cellular microenvironment of the liver. To elucidate the toxicity mechanisms of NPs on HepaRG spheroids, transcriptome analysis was conducted by using RNA sequencing (RNA-seq). Among all NPs, lowest and highest numbers of differentially expressed genes (DEGs) were found for 40 nm AuNP (118 genes) and InP/ZnS (1904 genes), respectively. Remarkably, processes such as drug metabolism, sensitivity to metal ions, oxidative stress, endothelial-mesenchymal transition (EMT) and apoptosis consistently exhibited significant enrichment across all NPs of different materials. Pathways related to stress responses of the cells such as the MAPK, p53 and mTOR pathways are found to be dysregulated upon exposure to various NPs. The genes that are common and unique between DEGs of different NPs were identified. These results provide novel insights into the toxicological mechanisms of NPs on HepaRG spheroids.
Collapse
Affiliation(s)
- Merve Erden Tüçer
- UNAM-Institute of Materials Science and Nanotechnology, National Nanotechnology Research Center, Bilkent University, 06800, Ankara, Turkey
| | - Nazlıcan Tunç
- UNAM-Institute of Materials Science and Nanotechnology, National Nanotechnology Research Center, Bilkent University, 06800, Ankara, Turkey
| | - Suat Tüçer
- UNAM-Institute of Materials Science and Nanotechnology, National Nanotechnology Research Center, Bilkent University, 06800, Ankara, Turkey
| | - Rana Acar
- Bilkent University, Department of Molecular Biology and Genetics, 06800, Ankara, Turkey
| | - Duygu Deniz Usta
- Gazi University, Faculty of Medicine, Department of Medical Biology and Genetics, 06500, Ankara, Turkey
| | - Kouroush Salimi
- Ankara Yildirim Beyazit University, Faculty of Engineering and Natural Sciences, Department of Chemical Engineering, 06010, Ankara, Turkey
| | - Özlen Konu
- UNAM-Institute of Materials Science and Nanotechnology, National Nanotechnology Research Center, Bilkent University, 06800, Ankara, Turkey; Bilkent University, Department of Molecular Biology and Genetics, 06800, Ankara, Turkey
| | - Urartu Özgür Şafak Şeker
- UNAM-Institute of Materials Science and Nanotechnology, National Nanotechnology Research Center, Bilkent University, 06800, Ankara, Turkey.
| |
Collapse
|
2
|
Jiao Y, Pan Y, Yang M, Li Z, Yu J, Fu R, Man B, Zhang C, Zhao X. Micro-nano hierarchical urchin-like ZnO/Ag hollow sphere for SERS detection and photodegradation of antibiotics. NANOPHOTONICS (BERLIN, GERMANY) 2024; 13:307-318. [PMID: 39633674 PMCID: PMC11501311 DOI: 10.1515/nanoph-2023-0659] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Accepted: 01/08/2024] [Indexed: 12/07/2024]
Abstract
Hollow urchin-like substrates have been widely interested in the field of surface-enhanced Raman scattering (SERS) and photocatalysis. However, most reported studies are simple nanoscale urchin-like substrate with limited light trapping range and complicated preparation process. In this paper, a simple and effective controllable synthesis strategy based on micro-nano hierarchical urchin-like ZnO/Ag hollow spheres was prepared. Compared with the 2D structure and solid spheres, the 3D urchin-like ZnO/Ag hollow sphere has higher laser utilization and more exposed specific surface area due to its special hollow structure, which resulted in excellent SERS and photocatalytic performance, and successfully realize the detection and photodegradation of antibiotics. The limited of detection of metronidazole can reach as low as 10-9 M, and degradation rate achieve 89 % within 120 min. The experimental and theoretical results confirm that the ZnO/Ag hollow spheres can be used in the development of ZnO heterostructure for the detection and degradation of antibiotics, which open new avenues for the development of novel ZnO-based substrate in SERS sensing and catalytic application to address environmental challenges.
Collapse
Affiliation(s)
- Yang Jiao
- School of Physics and Electronics, Shandong Normal University, Jinan250014, China
| | - Yuanyuan Pan
- School of Physics and Electronics, Shandong Normal University, Jinan250014, China
| | - Moru Yang
- School of Physics and Electronics, Shandong Normal University, Jinan250014, China
| | - Zhen Li
- School of Physics and Electronics, Shandong Normal University, Jinan250014, China
| | - Jing Yu
- School of Physics and Electronics, Shandong Normal University, Jinan250014, China
| | - Rong Fu
- School of Chemistry and Chemical Engineering, Liaocheng University, Liaocheng252000, China
| | - Baoyuan Man
- School of Physics and Electronics, Shandong Normal University, Jinan250014, China
| | - Chao Zhang
- School of Physics and Electronics, Shandong Normal University, Jinan250014, China
| | - Xiaofei Zhao
- School of Physics and Electronics, Shandong Normal University, Jinan250014, China
| |
Collapse
|
3
|
Tailoring the structure and function of metal organic framework by chemical etching for diverse applications. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2022.214699] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
|
4
|
Hollow multi-shelled In2S3 hierarchical nanotubes for enhanced photocatalytic oxidative coupling of benzylamine. J SOLID STATE CHEM 2022. [DOI: 10.1016/j.jssc.2022.123087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|