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Ichikawa K, Adachi T, Sowa K. Structural bioelectrochemistry of direct electron transfer-type multimeric dehydrogenases: Basic principle and rational strategies. Bioelectrochemistry 2025; 165:108973. [PMID: 40121792 DOI: 10.1016/j.bioelechem.2025.108973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2024] [Revised: 03/11/2025] [Accepted: 03/14/2025] [Indexed: 03/25/2025]
Abstract
Direct electron transfer (DET)-type bioelectrocatalysis, a coupled enzymatic and electrode reaction without redox mediators, provides insights into enzyme properties that facilitate the construction of efficient biomimetic devices. Because many DET-type multimeric dehydrogenases are membrane-bound proteins, obtaining the overall steric structures of these enzymes using conventional X-ray crystallography has proved difficult for many decades. Novel cryo-electron microscopy (cryo-EM) and single-particle image analysis have recently been developed that enable elucidation of the overall structure of membrane-bound DET-type multimeric dehydrogenases. In particular, "structural bioelectrochemistry," a fusion of structural biology and bioelectrochemistry, has enabled rapid hypothesis testing via the analysis of three-dimensional (3D) structures using enzyme engineering and electrochemistry. This review outlines critical related studies in the last decade and the epoch-making breakthroughs leading to next-generation applications.
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Affiliation(s)
- Konatsu Ichikawa
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Taiki Adachi
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Keisei Sowa
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan.
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Touloupakis E, Calegari Moia I, Zampieri RM, Cocozza C, Frassinelli N, Marchi E, Foderi C, Di Lorenzo T, Rezaie N, Muzzini VG, Traversi ML, Giovannelli A. Fire up Biosensor Technology to Assess the Vitality of Trees after Wildfires. BIOSENSORS 2024; 14:373. [PMID: 39194602 DOI: 10.3390/bios14080373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Revised: 07/23/2024] [Accepted: 07/29/2024] [Indexed: 08/29/2024]
Abstract
The development of tools to quickly identify the fate of damaged trees after a stress event such as a wildfire is of great importance. In this context, an innovative approach to assess irreversible physiological damage in trees could help to support the planning of management decisions for disturbed sites to restore biodiversity, protect the environment and understand the adaptations of ecosystem functionality. The vitality of trees can be estimated by several physiological indicators, such as cambium activity and the amount of starch and soluble sugars, while the accumulation of ethanol in the cambial cells and phloem is considered an alarm sign of cell death. However, their determination requires time-consuming laboratory protocols, making the approach impractical in the field. Biosensors hold considerable promise for substantially advancing this field. The general objective of this review is to define a system for quantifying the plant vitality in forest areas exposed to fire. This review describes recent electrochemical biosensors that can detect plant molecules, focusing on biosensors for glucose, fructose, and ethanol as indicators of tree vitality.
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Affiliation(s)
- Eleftherios Touloupakis
- Research Institute on Terrestrial Ecosystems, National Research Council, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Italy
| | - Isabela Calegari Moia
- Research Institute on Terrestrial Ecosystems, National Research Council, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Italy
| | - Raffaella Margherita Zampieri
- Research Institute on Terrestrial Ecosystems, National Research Council, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Italy
| | - Claudia Cocozza
- Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali-DAGRI, Università degli Studi di Firenze, Via San Bonaventura 13, 50145 Firenze, Italy
| | - Niccolò Frassinelli
- Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali-DAGRI, Università degli Studi di Firenze, Via San Bonaventura 13, 50145 Firenze, Italy
| | - Enrico Marchi
- Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali-DAGRI, Università degli Studi di Firenze, Via San Bonaventura 13, 50145 Firenze, Italy
| | - Cristiano Foderi
- Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali-DAGRI, Università degli Studi di Firenze, Via San Bonaventura 13, 50145 Firenze, Italy
| | - Tiziana Di Lorenzo
- Research Institute on Terrestrial Ecosystems, National Research Council, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Italy
| | - Negar Rezaie
- Research Institute on Terrestrial Ecosystems, National Research Council, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Italy
| | - Valerio Giorgio Muzzini
- Research Institute on Terrestrial Ecosystems, National Research Council, Research Area of Rome 1, Strada Provinciale 35d n. 9, Montelibretti, 00010 Rome, Italy
| | - Maria Laura Traversi
- Research Institute on Terrestrial Ecosystems, National Research Council, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Italy
| | - Alessio Giovannelli
- Research Institute on Terrestrial Ecosystems, National Research Council, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Italy
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Sowa K, Okuda-Shimazaki J, Fukawa E, Sode K. Direct Electron Transfer-Type Oxidoreductases for Biomedical Applications. Annu Rev Biomed Eng 2024; 26:357-382. [PMID: 38424090 DOI: 10.1146/annurev-bioeng-110222-101926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2024]
Abstract
Among the various types of enzyme-based biosensors, sensors utilizing enzymes capable of direct electron transfer (DET) are recognized as the most ideal. However, only a limited number of redox enzymes are capable of DET with electrodes, that is, dehydrogenases harboring a subunit or domain that functions specifically to accept electrons from the redox cofactor of the catalytic site and transfer the electrons to the external electron acceptor. Such subunits or domains act as built-in mediators for electron transfer between enzymes and electrodes; consequently, such enzymes enable direct electron transfer to electrodes and are designated as DET-type enzymes. DET-type enzymes fall into several categories, including redox cofactors of catalytic reactions, built-in mediators for DET with electrodes and by their protein hierarchic structures, DET-type oxidoreductases with oligomeric structures harboring electron transfer subunits, and monomeric DET-type oxidoreductases harboring electron transfer domains. In this review, we cover the science of DET-type oxidoreductases and their biomedical applications. First, we introduce the structural biology and current understanding of DET-type enzyme reactions. Next, we describe recent technological developments based on DET-type enzymes for biomedical applications, such as biosensors and biochemical energy harvesting for self-powered medical devices. Finally, after discussing how to further engineer and create DET-type enzymes, we address the future prospects for DET-type enzymes in biomedical engineering.
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Affiliation(s)
- Keisei Sowa
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto, Japan
| | - Junko Okuda-Shimazaki
- Department of Biotechnology and Life Science, Graduate School of Engineering, Tokyo University of Agriculture and Technology, Kogane, Tokyo, Japan
- Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University, Chapel Hill, North Carolina, USA;
| | - Eole Fukawa
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto, Japan
| | - Koji Sode
- Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University, Chapel Hill, North Carolina, USA;
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Silveri F, Paolini D, Della Pelle F, Bollella P, Scroccarello A, Suzuki Y, Fukawa E, Sowa K, Di Franco C, Torsi L, Compagnone D. Lab-made flexible third-generation fructose biosensors based on 0D-nanostructured transducers. Biosens Bioelectron 2023; 237:115450. [PMID: 37343312 DOI: 10.1016/j.bios.2023.115450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 05/26/2023] [Accepted: 06/04/2023] [Indexed: 06/23/2023]
Abstract
Herein, we report a scalable benchtop electrode fabrication method to produce highly sensitive and flexible third-generation fructose dehydrogenase amperometric biosensors based on water-dispersed 0D-nanomaterials. The electrochemical platform was fabricated via Stencil-Printing (StPE) and insulated via xurography. Carbon black (CB) and mesoporous carbon (MS) were employed as 0D-nanomaterials promoting an efficient direct electron transfer (DET) between fructose dehydrogenase (FDH) and the transducer. Both nanomaterials were prepared in water-phase via a sonochemical approach. The nano-StPE exhibited enhanced electrocatalytic currents compared to conventional commercial electrodes. The enzymatic sensors were exploited for the determination of D-fructose in model solutions and various food and biological samples. StPE-CB and StPE-MS integrated biosensors showed appreciable sensitivity (∼150 μA cm-2 mM-1) with μmolar limit of detection (0.35 and 0.16 μM, respectively) and extended linear range (2-500 and 1-250 μM, respectively); the selectivity of the biosensors, ensured by the low working overpotential (+0.15 V), has been also demonstrated. Good accuracy (recoveries between 95 and 116%) and reproducibility (RSD ≤8.6%) were achieved for food and urine samples. The proposed approach because of manufacturing versatility and the electro-catalytic features of the water-nanostructured 0D-NMs opens new paths for affordable and customizable FDH-based bioelectronics.
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Affiliation(s)
- Filippo Silveri
- Department of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Campus "Aurelio Saliceti" Via R. Balzarini 1, 64100 Teramo, Italy
| | - Davide Paolini
- Department of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Campus "Aurelio Saliceti" Via R. Balzarini 1, 64100 Teramo, Italy
| | - Flavio Della Pelle
- Department of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Campus "Aurelio Saliceti" Via R. Balzarini 1, 64100 Teramo, Italy.
| | - Paolo Bollella
- Department of Chemistry, University of Bari Aldo Moro, Via E. Orabona 4, 70125 Bari, Italy; Centre for Colloid and Surface Science - University of Bari Aldo Moro, Via Edoardo Orabona 4, 70125 Bari, Italy
| | - Annalisa Scroccarello
- Department of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Campus "Aurelio Saliceti" Via R. Balzarini 1, 64100 Teramo, Italy
| | - Yohei Suzuki
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Eole Fukawa
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Keisei Sowa
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Cinzia Di Franco
- Istituto di Fotonica e Nanotecnologie CNR, C/o Dipartimento Interateneo di Fisica, University of Bari Aldo Moro, Via Edoardo Orabona 4, 70125 Bari, Italy
| | - Luisa Torsi
- Department of Chemistry, University of Bari Aldo Moro, Via E. Orabona 4, 70125 Bari, Italy; Centre for Colloid and Surface Science - University of Bari Aldo Moro, Via Edoardo Orabona 4, 70125 Bari, Italy; Faculty of Science and Engineering, Åbo Akademi University, 20500 Turku Finland
| | - Dario Compagnone
- Department of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Campus "Aurelio Saliceti" Via R. Balzarini 1, 64100 Teramo, Italy.
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Wijayanti SD, Tsvik L, Haltrich D. Recent Advances in Electrochemical Enzyme-Based Biosensors for Food and Beverage Analysis. Foods 2023; 12:3355. [PMID: 37761066 PMCID: PMC10529900 DOI: 10.3390/foods12183355] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 08/28/2023] [Accepted: 09/04/2023] [Indexed: 09/29/2023] Open
Abstract
Food analysis and control are crucial aspects in food research and production in order to ensure quality and safety of food products. Electrochemical biosensors based on enzymes as the bioreceptors are emerging as promising tools for food analysis because of their high selectivity and sensitivity, short analysis time, and high-cost effectiveness in comparison to conventional methods. This review provides the readers with an overview of various electrochemical enzyme-based biosensors in food analysis, focusing on enzymes used for different applications in the analysis of sugars, alcohols, amino acids and amines, and organic acids, as well as mycotoxins and chemical contaminants. In addition, strategies to improve the performance of enzyme-based biosensors that have been reported over the last five years will be discussed. The challenges and future outlooks for the food sector are also presented.
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Affiliation(s)
- Sudarma Dita Wijayanti
- Laboratory of Food Biotechnology, Department of Food Science and Technology, University of Natural Resources and Life Sciences Vienna, Muthgasse 11, A-1190 Wien, Austria; (S.D.W.)
- Department of Food Science and Biotechnology, Brawijaya University, Malang 65145, Indonesia
| | - Lidiia Tsvik
- Laboratory of Food Biotechnology, Department of Food Science and Technology, University of Natural Resources and Life Sciences Vienna, Muthgasse 11, A-1190 Wien, Austria; (S.D.W.)
| | - Dietmar Haltrich
- Laboratory of Food Biotechnology, Department of Food Science and Technology, University of Natural Resources and Life Sciences Vienna, Muthgasse 11, A-1190 Wien, Austria; (S.D.W.)
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Bollella P. Enzyme-based amperometric biosensors: 60 years later … Quo Vadis? Anal Chim Acta 2022; 1234:340517. [DOI: 10.1016/j.aca.2022.340517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Revised: 10/09/2022] [Accepted: 10/11/2022] [Indexed: 11/01/2022]
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YAMADA H, MATSUMOTO K, KURATANI K, ARIYOSHI K, MATSUI M, MIZUHATA M. Preface for the 66th Special Feature “Novel Aspects and Approaches to Experimental Methods for Electrochemistry”. ELECTROCHEMISTRY 2022. [DOI: 10.5796/electrochemistry.22-66113] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Affiliation(s)
- Hirohisa YAMADA
- Department of Chemical Engineering, National Institute of Technology, Nara College
| | | | - Kentaro KURATANI
- Research Institute of Electrochemical Energy, National Institute of Advanced Industrial Science and Technology (AIST)
| | - Kingo ARIYOSHI
- Graduate School of Engineering, Osaka Metropolitan University
| | | | - Minoru MIZUHATA
- Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University
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Kashiwazaki G, Watanabe R, Nishikawa A, Kawamura K, Kitayama T, Hibi T. A selective hybrid fluorescent sensor for fructose detection based on a phenylboronic acid and BODIPY-based hydrophobicity probe. RSC Adv 2022; 12:15083-15090. [PMID: 35693230 PMCID: PMC9116957 DOI: 10.1039/d2ra01569b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Accepted: 05/11/2022] [Indexed: 11/21/2022] Open
Abstract
Fructose is widely used in the food industry. However, it may be involved in diseases by generating harmful advanced glycation end-products. We have designed and synthesized a novel fluorescent probe for fructose detection by combining a phenylboronic acid group with a BODIPY-based hydrophobicity probe. This probe showed a linear fluorescence response to d-fructose concentration in the range of 100-1000 μM, with a detection limit of 32 μM, which is advantageous for the simple and sensitive determination of fructose.
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Affiliation(s)
- Gengo Kashiwazaki
- Major in Advanced Bioscience, Graduate School of Agriculture, Kindai University 3327-204, Nakamachi Nara Nara 631-8505 Japan
| | - Ryo Watanabe
- Major in Advanced Bioscience, Graduate School of Agriculture, Kindai University 3327-204, Nakamachi Nara Nara 631-8505 Japan
| | - Akihiro Nishikawa
- Major in Advanced Bioscience, Graduate School of Agriculture, Kindai University 3327-204, Nakamachi Nara Nara 631-8505 Japan
| | - Koyori Kawamura
- Department of Bioscience and Biotechnology, Faculty of Bioscience and Biotechnology, Fukui Prefectural University 4-1-1 Matsuoka-Kenjojima, Eiheiji Fukui 910-1195 Japan
| | - Takashi Kitayama
- Major in Advanced Bioscience, Graduate School of Agriculture, Kindai University 3327-204, Nakamachi Nara Nara 631-8505 Japan
| | - Takao Hibi
- Department of Bioscience and Biotechnology, Faculty of Bioscience and Biotechnology, Fukui Prefectural University 4-1-1 Matsuoka-Kenjojima, Eiheiji Fukui 910-1195 Japan
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New application of a traditional method: colorimetric sensor array for reducing sugars based on the in-situ formation of core-shell gold nanorod-coated silver nanoparticles by the traditional Tollens reaction. Mikrochim Acta 2021; 188:142. [PMID: 33774720 DOI: 10.1007/s00604-021-04796-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Accepted: 03/18/2021] [Indexed: 10/21/2022]
Abstract
An effective and robust colorimetric sensor array for simultaneous detection and discrimination of five reducing sugars (i.e., glyceraldehyde (Gly), fructose (Fru), glucose (Glu), maltose (Mal), and ribose (Rib)) has been proposed. In the sensor array, two negatively charged polydielectrics (sodium polystyrenesulfonate (NaPSS) and sodium polymethacrylate (NaPMAA)), which served as the sensing elements, were individually absorbed on the surface of the cetyltrimethylammonium bromide (CTAB)-coated gold nanorods (AuNR) with positive charges through electrostatic action, forming the designed sensor units (NaPSS-AuNR and NaPMAA-AuNR). In the presence of Tollens reagent (Ag(NH3)2OH), Ag+ was absorbed on the surface of negatively charged NaPSS-AuNR and NaPMAA-AuNRs. When confronted with differential reducing sugars, different reducing sugars exhibited differential levels of deoxidizing abilities toward Ag+, thus Ag+ was reduced to diverse amounts of silver nanoparticles (AgNPs) in situ to form core-shell AuNR@AgNP by the traditional Tollens reaction method, leading to distinct colorimetric response patterns (value of AS/AL (the ratio of absorbance at 360 nm to that at 760 nm in Ag+-NaPMAA-AuNR, and the ratio of absorbance at 360 nm to that at 740 nm in Ag+-NaPSS-AuNR)). These response patterns are characteristic for each reducing sugar, and can be quantitatively distinguished by linear discriminant analysis (LDA) at concentrations as low as 10 nM with relative standard deviation (RSD) of 4.11% (n = 3). The practicability of this sensor array has been validated by recognition of reducing sugars in serum and urine samples. A colorimetric sensor array for reducing sugar discrimination based on the reduction of Ag+ and in situ formation of AuNR@AgNP.
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