Role of fungal laccase in iodide oxidation in soils

Microbial involvement in iodine cycle: mechanisms and potential applications

Stable iodine isotopes are essential for humans as they are necessary for producing thyroid gland hormones. However, there are hazardous radioactive iodine isotopes that are emitted into the environment through radioactive waste generated by nuclear power plants, nuclear weapon tests, and medical practice. Due to the biophilic character of iodine radionuclides and their enormous biomagnification potential, their elimination from contaminated environments is essential to prevent the spread of radioactive pollution in ecosystems. Since microorganisms play a vital role in controlling iodine cycling and fate in the environment, they also can be efficiently utilized in solving the issue of contamination spread. Thus, this paper summarizes all known on microbial processes that are involved in iodine transformation to highlight their prospects in remediation of the sites contaminated with radioactive iodine isotopes.

Iodide uptake by forest soils is principally related to the activity of extracellular oxidases

129I is a nuclear fission decay product of concern because of its long half-life (16 Ma) and propensity to bioaccumulate. Microorganisms impact iodine mobility in soil systems by promoting iodination (covalent binding) of soil organic matter through processes that are not fully understood. Here, we examined iodide uptake by soils collected at two depths (0-10 and 10-20 cm) from 5 deciduous and coniferous forests in Japan and the United States. Autoclaved soils, and soils amended with an enzyme inhibitor (sodium azide) or an antibacterial agent (bronopol), bound significantly less 125I tracer (93%, 81%, 61% decrease, respectively) than the untreated control soils, confirming a microbial role in soil iodide uptake. Correlation analyses identified the strongest significant correlation between 125I uptake and three explanatory variables, actinobacteria soil biomass (p = 6.04E-04, 1.35E-02 for Kendall-Tau and regression analysis, respectively), soil nitrogen content (p = 4.86E-04, 4.24E-03), and soil oxidase enzyme activity at pH 7.0 using the substrate L-DOPA (p = 2.83E-03, 4.33E-04) and at pH 5.5 using the ABTS (p = 5.09E-03, 3.14E-03). Together, the results suggest that extracellular oxidases, primarily of bacterial origin, are the primary catalyst for soil iodination in aerobic, surface soils of deciduous and coniferous forests, and that soil N content may be indicative of the availability of binding sites for reactive iodine species.

SOIL-SOIL SOLUTION DISTRIBUTION COEFFICIENT OF RADIOIODINE IN SURFACE SOILS AROUND SPENT NUCLEAR FUEL REPROCESSING PLANT IN ROKKASHO, JAPAN

The soil-soil solution distribution coefficient (Kd) of radioiodine in soil samples with various total carbon (TC) contents was measured in a batch sorption experiment using 125I tracer spiked as I-. The log values of Kd-125I and TC concentration in low-TC soils (< 10g kg-1) were positively correlated, whereas those of Kd-125I in TC rich soils (> 10 g kg-1) and dissolved organic carbon (DOC) in liquid phase were negatively correlated. The proportion of 125I in the < 3 kDa fraction in the liquid phase is negatively correlated with the log of DOC, implying that 125I is primarily combined with high-molecular-weight organic matter in soil solutions rich in DOC. The results suggest that Kd-125I in soil with high soil organic material (SOM) content is governed by DOC via the combination of 125I and DOC. In contrast, Kd-125I in soils with a low SOM content was governed by SOM because the anion exchange capacity of SOM was vital for the sorption of 125I-.

The role of JrLACs in the lignification of walnut endocarp

BACKGROUND

The walnut shell, which is composed of a large number of sclereids originating from the lignified parenchyma of the endocarp, plays an important role in fruit development and during harvesting and storage. The physical and chemical properties of walnut shells are closely related to the lignin content. Laccase is the key enzyme responsible for lignin biosynthesis by the polymerization of monolignols and plays crucial roles in secondary cell wall formation in plants. In this study, we screened and identified laccase family genes from the walnut genome and investigated the expression of laccase during endocarp lignification in walnut.

RESULTS

A total of 37 laccase genes were screened from the walnut genome and distributed on nine chromosomes and classified into 6 subfamilies, among which subfamily IV showed distinct expansion. We observed that endocarp lignification started 44 days after flowering (DAF), and at later periods, the lignin content increased rapidly, with growth peaks at 44-50 DAF and 100-115 DAF. The lignification of the endocarp proceeded from the outside to the inside, as demonstrated by section staining in combination with endocarp staining. Furthermore, the changes in the expression of laccase family genes in the endocarp at different developmental stages were studied, and JrLACs showed different expression trends. The expression of nine genes showed significant increase after 44 DAF, and among these, JrLAC12-1, JrLAC12-2 and JrLAC16 showed a significant change in expression at the lignification stage. A study of the expression of JrLACs in different tissues and at various endocarp developmental stages revealed, that most JrLACs were expressed at low levels in mature tissues and at high levels in young tissues, in particular, JrLAC12-1 showed high expression in the young stems. A significant positive correlation was found between the expression of JrLAC12-1 and the variation in the lignin content in the endocarp.

CONCLUSION

Laccase genes play an important role in the lignification of the walnut endocarp, and JrLACs play different roles during fruit development. This study shows that JrLAC12-1 may play a key role in the lignification of endocarp.

Effects of mixed agro-residues (corn crop waste) on lignin-degrading enzyme activities, growth, and quality of Lentinula edodes

Using agro-residues in bioreactors to produce mushrooms is an important component of eco-agriculture. Here, we tested the cultivation of Lentinula edodes with corn cob (CC) and corn straw (CS), and then evaluated the resulting enzyme activities, agronomic traits, textures and nutrient compositions of mushrooms. Laccase (T1 formula, 3.26 g U⁻¹) and carboxymethyl cellulase (T3 formula, 1.01 g U⁻¹) activities were the highest at the time for a complete substrate colonization stage (TCSC), while acidic xylanase activity was the highest (CK formula, 4.05 g U⁻¹) in the mushroom block to color-turned (TMBCT) stage. The biological efficiency of growth on the T6 formula was 8.82% higher than growth on the CK formula, wherein the low C/N ratio of the substrate had an obvious negative effect on yield while the mass ratio of pileus (MRP) of fruiting bodies did not change with mixed substrates. No significant differences were observed in mineral composition for CK formulas, but corn crop waste (CCW) formulas exhibited more optimal nutritional contents. A formula containing more corn cob and sawdust (SD) (sum of at least 70%) as the substrate can produce fruiting bodies with good hardness. These results indicate that the use of corn cobs as the main ingredient, mixed with sawdust and corn straw to grow L. edodes provides a more efficient use of agro-residues for growth. Thus, mixed agro-residue formulas have exceptional advantages in texture, nutrition of fruiting bodies, and yields.

Using agro-residues in bioreactors to produce mushrooms is an important component of eco-agriculture.

Molecular Interaction of Aqueous Iodine Species with Humic Acid Studied by I and C K-Edge X-ray Absorption Spectroscopy

Iodine-129 is one of three key risk drivers at several US Department of Energy waste management sites. Natural organic matter (NOM) is thought to play important roles in the immobilization of aqueous iodide (I^-) and iodate (IO₃^-) in the environment, but molecular interactions between NOM and iodine species are poorly understood. In this work, we investigated iodine and carbon speciation in three humic acid (HA)-I systems using I K-edge XANES and EXAFS and C K-edge XANES spectroscopy: (1) I^- in the presence of laccase (an oxidase enzyme) and a mediator, 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) in a pH 4 buffer, (2) I^- in the presence of lactoperoxidase (LPO) and H₂O₂ in a pH 7 buffer, and (3) IO₃^- in a pH 3 groundwater. Both oxidase and peroxidase systems could oxidize I^- to I₂ or hypoiodide (HOI) leading to organo-I formation. However, the laccase-ABTS mediator was the most effective and enhanced I^- uptake by HA up to 13.5 mg/g, compared to 1.9 mg/g for the LPO-H₂O₂. IO₃^- was abiotically reduced to I₂ or HOI leading to an organo-I formation. Pathways for HA iodination include covalent modification of aromatic-type rings by I₂ / HOI or iodine incorporation into newly formed benzoquinone species arising from the oxidation of phenolic C species. This study improves our molecular-level understanding of NOM-iodine interactions and stresses the important role that mediators may play in the enzymatic reactions between iodine and NOM.

RELATIONSHIP BETWEEN SOIL-SOIL-SOLUTION DISTRIBUTION COEFFICIENTS OF 125I AND 127I IN PASTURE SOIL

We measured the depth profiles of soil-soil-solution distribution coefficients (Kd) of native 127I (127I-Kd) and exogenous 125I- (125I-Kd) in soils from a pasture near the spent nuclear fuel reprocessing plant in Rokkasho, Japan, and investigated their relationships to depth profiles of the concentration in soil of 127I and organic C and Kd of organic C (C-Kd). The depth profiles of 125I-Kd and 127I-Kd were similar. The relatively low 127I concentrations and low values of both 127I-Kd and 125I-Kd indicate that some of the I deposited on the soil surface have been transported to depths greater than 10 cm. On the other hand, high 127I-Kd/125I-Kd ratios in the uppermost 10 cm of soil indicate that some of the 127I bound to that soil could not be exchanged with exogenous 125I. Although a previous study has shown a power function relationship between 125I-Kd and C-Kd, our data show that the relationships of both 125I-Kd and 127I-Kd to C-Kd are exponential functions. The reason for these conflicting results is unknown. Nonetheless, our data clearly show Kd values for both 125I- and 127I to be dependent on C-Kd. In addition, the dependence of both 127I-Kd and 125I-Kd on C-Kd suggests that organic material in the soil has a role in the transport of I down the soil profile.

SPECIATION OF IODINE IN SOIL SOLUTION IN FOREST AND GRASSLAND SOILS IN ROKKASHO, JAPAN

The behaviour of I in soil depends on its chemical form in soil solution. Stable I (127I) in the soil solution under actual soil conditions was investigated as a natural analogue of long-lived radioiodine (129I). Soil samples were collected at 5-cm depth intervals down to 20 cm from forests and grasslands in Rokkasho, where the Japanese first commercial nuclear fuel reprocessing plant is located, and the soil solution was extracted by centrifugation. Almost half of total I in the soil solution was iodide, and the other half was dissolved organic I (DOI), with iodate under the detection limit. The proportion of DOI in total I at 0-5 cm depth was larger than the proportions at 5-20 cm depth. The concentration of DOI was positively correlated with that of DOC in the soil solution, suggesting that the behaviour of DOI in the surface soil is affected by labile organic matter dynamics.