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Ranaweera KKTN, Baik M. In silico docking and molecular dynamics for the discovery of inhibitors of enteric methane production in ruminants - A review. Anim Biosci 2025; 38:1-18. [PMID: 39210806 PMCID: PMC11725728 DOI: 10.5713/ab.24.0291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 06/14/2024] [Accepted: 07/19/2024] [Indexed: 09/04/2024] Open
Abstract
The increase in methane emissions, a major greenhouse gas, threatens human well-being and global ecosystems due to its contribution to global warming. Livestock, particularly ruminants, have been a major research topic in recent decades due to their methane production. Therefore, the objective of the current review was to comprehensively discuss the in silico techniques used to mitigate methane production from ruminants. The review covers the principles of in silico docking and molecular dynamics, which can be used to develop methanogenesis inhibitors. It also discusses specific methanogen enzymes as potential targets for inhibitor development. Furthermore, in silico-based methanogenesis inhibitor development studies have been reviewed with the authors' opinions. The further use of in silico-based research techniques, including artificial intelligence-based systems, is encouraged to help reduce methane production from livestock more efficiently and costeffectively.
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Affiliation(s)
- Kamburawala Kankanamge Tharindu Namal Ranaweera
- Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 08826,
Korea
- Department of Animal Science, Faculty of Animal Science and Export Agriculture, Uva Wellassa University, Badulla 90000,
Sri Lanka
| | - Myunggi Baik
- Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 08826,
Korea
- Institute of Green-Bio Science and Technology, Seoul National University, Pyeongchang 25354,
Korea
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Elghandour MMMY, Pacheco EBF, Khusro A, Tirado-González DN, Lackner M, Ponce-Covarrubias JL, De Palo P, Maggiolino A, Salem AZM. Deciphering the role of Moringa oleifera seeds and probiotic bacteria on mitigation of biogas production from ruminants. AMB Express 2024; 14:86. [PMID: 39080197 PMCID: PMC11289196 DOI: 10.1186/s13568-024-01744-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Accepted: 07/08/2024] [Indexed: 08/02/2024] Open
Abstract
Maintaining cleaner and more sustainable ecosystems by mitigating greenhouse gas (GHG) emissions from livestock through dietary manipulation is in demand. This study was aimed to assess the effect of Moringa oleifera seeds and probiotics (Pediococcus acidilactici BX-B122 and Bacillus coagulans BX-B118) as feed supplements on GHG production and fermentation profile from steers and sheep. The treatments included diets containing 0, 6, 12, and 18% of M. oleifera seeds meal and a mixture of probiotic bacteria (0.2 ml/g of diet). Total biogas production, CH4, CO, and H2S emission from animals (up to 48 h), rumen fermentation profile, and CH4 conversion efficiency were recorded using standard protocols. Results showed interaction among M. oleifera seeds and probiotics on asymptotic biogas production and total biogas production up to 48 h (P < 0.05). The rate of CH4 emission in steers was reduced from 0.1694 to 0.0447 ml/h using 6 and 18% of M. oleifera seeds (P < 0.05). Asymptotic CO and the rate of CO production were increased (P < 0.05) by supplementing different doses of M. oleifera seeds and probiotics. Adding 12% of M. oleifera seeds and probiotics reduced H2S production from 0.0675 to 0.0112 ml H2S/g DM (at 48 h of fermentation) in steers. In sheep, the additives mitigated H2S production from 0.0364 to 0.0029 ml H2S/g DM (at 48 h of fermentation), however there were not interaction (P = 0.7744). In addition, M. oleifera seeds and probiotics reduced the pH level and dry matter degradability (DMD) in steers and sheep (P < 0.0001) showing a positive impact on CH4:ME and CH4:OM (in steers) and CH4:SCFA (in sheep), while the interaction was not significant (P > 0.05) for CH4:SCFA (in steers) and CH4:ME and CH4:OM (in sheep). In conclusion, the interaction of M. oleifera seeds and probiotics in the feeding diet reduced GHG emissions and affected the fermentation profile of steers and sheep.
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Affiliation(s)
- Mona M M Y Elghandour
- Faculty of Veterinary Medicine and Zootechnics, Autonomous University of the State of Mexico, Toluca, 50000, Mexico
| | | | - Ameer Khusro
- Department of Research Analytics, Saveetha Institute of Medical and Technical Sciences, Saveetha Dental College and Hospitals, Saveetha University, Chennai, 600077, India
| | - Deli Nazmín Tirado-González
- Tecnológico Nacional de México (TecNM), Instituto Tecnológico el Llano Aguascalientes (ITEL), carr. Aguascalientes-SLP km 18.5, El Llano, Aguascalientes, 20330, México
| | - Maximilian Lackner
- Department of Industrial Engineering, University of Applied Sciences Technikum Wien, Hoechstaedtplatz 6, Vienna, 1200, Austria.
| | - José Luis Ponce-Covarrubias
- Escuela Superior de Medicina Veterinaria y Zootecnia No. 3, Universidad Autónoma de Guerrero (UAGro), Técpan de Galeana, Guerrero, 40900, México
| | - Pasquale De Palo
- Department of Veterinary Medicine, University of Bari A. Moro, Valenzano, Bari, 70010, Italy
| | - Aristide Maggiolino
- Department of Veterinary Medicine, University of Bari A. Moro, Valenzano, Bari, 70010, Italy
| | - Abdelfattah Z M Salem
- Faculty of Veterinary Medicine and Zootechnics, Autonomous University of the State of Mexico, Toluca, 50000, Mexico.
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