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Guo J, Hou Q, Tan Y, Fu R, Huang X, Cao C. Membrane Proteins in Nanodiscs: Methods and Applications. ChemMedChem 2025; 20:e202400775. [PMID: 39825697 DOI: 10.1002/cmdc.202400775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2024] [Revised: 01/17/2025] [Accepted: 01/17/2025] [Indexed: 01/20/2025]
Abstract
Membrane proteins, a principal class of drug targets, play indispensable roles in various biological processes and are closely associated with essential life functions. Their study, however, is complicated by their low solubility in aqueous environments and distinctive structural characteristics, necessitating a suitable native-like environment for molecular analysis. Nanodisc technology has revolutionized this field, providing biochemists with a powerful tool to stabilize membrane proteins and significantly enhance their research possibilities. This review outlines the substantial advancements in nanodisc methodologies and applications from 2018 to 2024. We cover the development of various nanodisc models, as well as structural and functional studies of membrane proteins that utilize nanodiscs, highlighting their medical applications.
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Affiliation(s)
- Jiaxu Guo
- State Key Laboratory of Elemento-Organic Chemistry and Frontiers Science, Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Qinghan Hou
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, 91125, US
| | - Yulin Tan
- State Key Laboratory of Elemento-Organic Chemistry and Frontiers Science, Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Ruoheng Fu
- State Key Laboratory of Elemento-Organic Chemistry and Frontiers Science, Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Xuanwei Huang
- State Key Laboratory of Elemento-Organic Chemistry and Frontiers Science, Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Chan Cao
- State Key Laboratory of Elemento-Organic Chemistry and Frontiers Science, Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin, 300071, China
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Yadav P, Tripathi MK, Yadav MK. Structure-Guided Identification of Novel Aromatase Inhibitors Targeting Breast Carcinoma. Chem Biodivers 2024; 21:e202401465. [PMID: 39036940 DOI: 10.1002/cbdv.202401465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Revised: 07/02/2024] [Accepted: 07/22/2024] [Indexed: 07/23/2024]
Abstract
Aromatase inhibitors play a critical therapeutic role in treating ER+ breast cancer, especially in postmenopausal women. However, their efficacy is often limited by resistance and severe side effects. Identifying new compounds that can disrupt aromatase enzyme function is essential. In this study, structural anomalies in the aromatase enzyme were corrected through energy minimization, and the structure was validated via Ramachandran plot. We screened 170,269 natural compounds from the ASINEX Biodesign library using high-throughput screening algorithms to target the aromatase enzyme. Molecular docking identified three compounds: BDD30170158, BDE33872639, and BDE30177677, all showing stable binding interactions with the aromatase enzyme. Molecular dynamics simulations over 100 ns confirmed the conformational stability of these compounds. Although all three compounds exhibited the desired pharmacokinetic and drug metabolism properties, only one compound (BDE33872639) was identified as a non-blocker, demonstrating a reduced risk of adverse cardiac effects. This compound exhibits significant potential as a novel aromatase inhibitor, warranting further experimental research to develop it as a therapeutic option for ER+ breast cancer.
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Affiliation(s)
- Priyanka Yadav
- Department of Biotechnology, SRM University, Delhi-NCR, Sonepat, 131029, India
| | - Manish Kumar Tripathi
- Department of Biophysics, All India Institute of Medical Sciences, New Delhi, 110029, India
| | - Manoj Kumar Yadav
- Department of Biomedical Engineering, SRM University, Delhi-NCR, Sonepat, Haryana, 131029, India
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Chen Z, Chang J, Wang S, Fang H, Zhang T, Gong Y, Yang J, Liu G, Gu Y, Hua X. Environmental Evaluation on Toxicity, Toxic Mechanism, and Hydrolysis Behavior of Potential Acethydrazide Fungicide Candidates. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:5636-5644. [PMID: 38457784 DOI: 10.1021/acs.jafc.3c07413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/10/2024]
Abstract
The evaluation of toxicity and environmental behavior of bioactive lead molecules is helpful in providing theoretical support for the development of agrochemicals, in line with the sustainable development of the ecological environment. In previous work, some acethydrazide structures have been demonstrated to exhibit excellent and broad-spectrum fungicidal activity; however, its environmental compatibility needs to be further elucidated if it is to be identified as a potential fungicide. In this project, the toxicity of fungicidal acethydrazide lead compounds F51, F58, F72, and F75 to zebrafish was determined at 10 μg mL-1 and 1 μg mL-1. Subsequently, the toxic mechanism of compound F58 was preliminarily explored by histologic section and TEM observations, which revealed that the gallbladder volume of common carp treated with compound F58 increased, accompanied by a deepened bile color, damaged plasma membrane, and atrophied mitochondria in gallbladder cells. Approximately, F58-treated hepatocytes exhibited cytoplasmic heterogeneity, with partial cellular vacuolation and mitochondrial membrane rupture. Metabolomics analysis further indicated that differential metabolites were enriched in the bile formation-associated steroid biosynthesis, primary bile acid biosynthesis, and taurine and hypotaurine metabolism pathways, as well as in the membrane function-related glycerophospholipid metabolism, linolenic acid metabolism, α-linolenic acid metabolism, and arachidonic acid metabolism pathways, suggesting that the acethydrazide F58 may have acute liver toxicity to common carp. Finally, the hydrolysis dynamics of F58 was investigated, with the obtained half-life of 5.82 days. The above results provide important guiding significance for the development of new green fungicides.
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Affiliation(s)
- Zhanfang Chen
- College of Agricultural Science and Engineering, Liaocheng University, Liaocheng 252000, P. R. China
| | - Jing Chang
- College of Agricultural Science and Engineering, Liaocheng University, Liaocheng 252000, P. R. China
| | - Shuo Wang
- College of Agricultural Science and Engineering, Liaocheng University, Liaocheng 252000, P. R. China
| | - Hongbin Fang
- College of Agricultural Science and Engineering, Liaocheng University, Liaocheng 252000, P. R. China
| | - Tiancheng Zhang
- College of Agricultural Science and Engineering, Liaocheng University, Liaocheng 252000, P. R. China
| | - Yufei Gong
- College of Agricultural Science and Engineering, Liaocheng University, Liaocheng 252000, P. R. China
| | - Jiayi Yang
- College of Agricultural Science and Engineering, Liaocheng University, Liaocheng 252000, P. R. China
| | - Guiqin Liu
- College of Agricultural Science and Engineering, Liaocheng University, Liaocheng 252000, P. R. China
| | - Yucheng Gu
- Jealott's Hill International Research Centre, Syngenta Ltd., Bracknell RG42 6EY, United Kingdom
| | - Xuewen Hua
- College of Agricultural Science and Engineering, Liaocheng University, Liaocheng 252000, P. R. China
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Hackett JC. 22 nd International Conference on Cytochrome P450 (ICCP450). J Inorg Biochem 2023; 247:112347. [PMID: 37544844 DOI: 10.1016/j.jinorgbio.2023.112347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/08/2023]
Affiliation(s)
- John C Hackett
- Department of Chemistry and Biochemistry, Florida International University, Miami, FL 33199, United States of America.
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