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Frej AD, Clark J, Le Roy CI, Lilla S, Thomason PA, Otto GP, Churchill G, Insall RH, Claus SP, Hawkins P, Stephens L, Williams RSB. The Inositol-3-Phosphate Synthase Biosynthetic Enzyme Has Distinct Catalytic and Metabolic Roles. Mol Cell Biol 2016; 36:1464-79. [PMID: 26951199 PMCID: PMC4859692 DOI: 10.1128/mcb.00039-16] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2016] [Revised: 02/19/2016] [Accepted: 03/03/2016] [Indexed: 12/24/2022] Open
Abstract
Inositol levels, maintained by the biosynthetic enzyme inositol-3-phosphate synthase (Ino1), are altered in a range of disorders, including bipolar disorder and Alzheimer's disease. To date, most inositol studies have focused on the molecular and cellular effects of inositol depletion without considering Ino1 levels. Here we employ a simple eukaryote, Dictyostelium discoideum, to demonstrate distinct effects of loss of Ino1 and inositol depletion. We show that loss of Ino1 results in an inositol auxotrophy that can be rescued only partially by exogenous inositol. Removal of inositol supplementation from the ino1(-) mutant resulted in a rapid 56% reduction in inositol levels, triggering the induction of autophagy, reduced cytokinesis, and substrate adhesion. Inositol depletion also caused a dramatic generalized decrease in phosphoinositide levels that was rescued by inositol supplementation. However, loss of Ino1 triggered broad metabolic changes consistent with the induction of a catabolic state that was not rescued by inositol supplementation. These data suggest a metabolic role for Ino1 that is independent of inositol biosynthesis. To characterize this role, an Ino1 binding partner containing SEL1L1 domains (Q54IX5) and having homology to mammalian macromolecular complex adaptor proteins was identified. Our findings therefore identify a new role for Ino1, independent of inositol biosynthesis, with broad effects on cell metabolism.
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Affiliation(s)
- Anna D Frej
- Centre for Biomedical Sciences, School of Biological Sciences, Royal Holloway University of London, Egham, Surrey, United Kingdom
| | - Jonathan Clark
- The Babraham Institute, Cambridge, Cambridgeshire, United Kingdom
| | - Caroline I Le Roy
- Department of Food and Nutritional Sciences, The University of Reading, Reading, Berkshire, United Kingdom
| | - Sergio Lilla
- Cancer Research UK Beatson Institute, Bearsden, Glasgow, United Kingdom
| | - Peter A Thomason
- Cancer Research UK Beatson Institute, Bearsden, Glasgow, United Kingdom
| | - Grant P Otto
- Centre for Biomedical Sciences, School of Biological Sciences, Royal Holloway University of London, Egham, Surrey, United Kingdom
| | - Grant Churchill
- Department of Pharmacology, University of Oxford, Oxford, Oxfordshire, United Kingdom
| | - Robert H Insall
- Cancer Research UK Beatson Institute, Bearsden, Glasgow, United Kingdom
| | - Sandrine P Claus
- Department of Food and Nutritional Sciences, The University of Reading, Reading, Berkshire, United Kingdom
| | - Phillip Hawkins
- The Babraham Institute, Cambridge, Cambridgeshire, United Kingdom
| | - Len Stephens
- The Babraham Institute, Cambridge, Cambridgeshire, United Kingdom
| | - Robin S B Williams
- Centre for Biomedical Sciences, School of Biological Sciences, Royal Holloway University of London, Egham, Surrey, United Kingdom
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De Block J, Szopinska A, Guerriat B, Dodzian J, Villers J, Hochstenbach JF, Morsomme P. Yeast Pmp3p has an important role in plasma membrane organization. J Cell Sci 2015; 128:3646-59. [PMID: 26303201 DOI: 10.1242/jcs.173211] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2015] [Accepted: 08/18/2015] [Indexed: 01/24/2023] Open
Abstract
Pmp3p-related proteins are highly conserved proteins that exist in bacteria, yeast, nematodes and plants, and its transcript is regulated in response to abiotic stresses, such as low temperature or high salinity. Pmp3p was originally identified in Saccharomyces cerevisiae, and it belongs to the sensitive to Na(+) (SNA)-protein family, which comprises four members--Pmp3p/Sna1p, Sna2p, Sna3p and Sna4p. Deletion of the PMP3 gene conferred sensitivity to cytotoxic cations, whereas removal of the other SNA genes did not lead to clear phenotypic effects. It has long been believed that Pmp3p-related proteins have a common and important role in the modulation of plasma membrane potential and in the regulation of intracellular ion homeostasis. Here, we show that several growth phenotypes linked to PMP3 deletion can be modulated by the removal of specific genes involved in sphingolipid synthesis. These genetic interactions, together with lipid binding assays and epifluorescence microscopy, as well as other biochemical experiments, suggest that Pmp3p could be part of a phosphoinositide-regulated stress sensor.
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Affiliation(s)
- Julien De Block
- Université Catholique de Louvain, Institut des Sciences de la Vie, Croix du Sud 4-5, Louvain-la-Neuve B-1348, Belgium
| | - Aleksandra Szopinska
- Université Catholique de Louvain, Institut des Sciences de la Vie, Croix du Sud 4-5, Louvain-la-Neuve B-1348, Belgium
| | - Bérengère Guerriat
- Université Catholique de Louvain, Institut des Sciences de la Vie, Croix du Sud 4-5, Louvain-la-Neuve B-1348, Belgium
| | - Joanna Dodzian
- Université Catholique de Louvain, Institut des Sciences de la Vie, Croix du Sud 4-5, Louvain-la-Neuve B-1348, Belgium
| | - Jennifer Villers
- Université Catholique de Louvain, Institut des Sciences de la Vie, Croix du Sud 4-5, Louvain-la-Neuve B-1348, Belgium
| | - Jean-François Hochstenbach
- Université Catholique de Louvain, Institut des Sciences de la Vie, Croix du Sud 4-5, Louvain-la-Neuve B-1348, Belgium
| | - Pierre Morsomme
- Université Catholique de Louvain, Institut des Sciences de la Vie, Croix du Sud 4-5, Louvain-la-Neuve B-1348, Belgium
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Leavitt JM, Alper HS. Advances and current limitations in transcript-level control of gene expression. Curr Opin Biotechnol 2015; 34:98-104. [DOI: 10.1016/j.copbio.2014.12.015] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2014] [Revised: 12/14/2014] [Accepted: 12/15/2014] [Indexed: 11/25/2022]
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Dissecting the cis and trans elements that regulate adjacent-gene coregulation in Saccharomyces cerevisiae. EUKARYOTIC CELL 2014; 13:738-48. [PMID: 24706020 DOI: 10.1128/ec.00317-13] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The relative positions that genes occupy on their respective chromosomes can play a critical role in determining how they are regulated at the transcriptional level. For example, a significant fraction of the genes from a variety of coregulated gene sets, including the ribosomal protein (RP) and the rRNA and ribosome biogenesis (RRB) regulons, exist as immediate, adjacent gene pairs. These gene pairs occur in all possible divergent, tandem, and convergent orientations. Adjacent-gene pairing in these regulons is associated with a tighter transcriptional coregulation than is observed for nonpaired genes of the same regulons. In order to define the cis and trans factors that regulate adjacent-gene coregulation (AGC), we conducted a mutational analysis of the convergently oriented RRB gene pair MPP10-YJR003C. We observed that coupled corepression of the gene pair under heat shock was abrogated when the two genes were separated by an actively expressed RNA polymerase (Pol) II transcription unit (the LEU2 gene) but not when the inserted LEU2 gene was repressed. In contrast, the insertion of an RNA Pol III-transcribed tRNA (Thr) gene did not disrupt the coregulated repression of MPP10 and YJR003C. A targeted screen of mutants defective in regulating chromosome architecture revealed that the Spt20, Snf2, and Chd1 proteins were required for coupling the repression of YJR003C to that of MPP10. Nucleosome occupancy assays performed across the MPP10 and YJR003C promoter regions revealed that the mechanism of corepression of the gene pair was not related to the repositioning of nucleosomes across the respective gene promoters.
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