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For: Masse JE, Keller R, Pervushin K. SideLink: automated side-chain assignment of biopolymers from NMR data by relative-hypothesis-prioritization-based simulated logic. J Magn Reson 2006;181:45-67. [PMID: 16632394 DOI: 10.1016/j.jmr.2006.03.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2005] [Revised: 03/06/2006] [Accepted: 03/10/2006] [Indexed: 05/08/2023]
Number Cited by Other Article(s)
1
Sciolino N, Liu A, Breindel L, Burz DS, Sulchek T, Shekhtman A. Microfluidics delivery of DARPP-32 into HeLa cells maintains viability for in-cell NMR spectroscopy. Commun Biol 2022;5:451. [PMID: 35551287 PMCID: PMC9098904 DOI: 10.1038/s42003-022-03412-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Accepted: 04/26/2022] [Indexed: 11/09/2022]  Open
2
DeMott CM, Girardin R, Cobbert J, Reverdatto S, Burz DS, McDonough K, Shekhtman A. Potent Inhibitors of Mycobacterium tuberculosis Growth Identified by Using in-Cell NMR-based Screening. ACS Chem Biol 2018;13:733-741. [PMID: 29359908 DOI: 10.1021/acschembio.7b00879] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
3
Cobbert JD, DeMott C, Majumder S, Smith EA, Reverdatto S, Burz DS, McDonough KA, Shekhtman A. Caught in action: selecting peptide aptamers against intrinsically disordered proteins in live cells. Sci Rep 2015;5:9402. [PMID: 25801767 PMCID: PMC4371151 DOI: 10.1038/srep09402] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2014] [Accepted: 03/03/2015] [Indexed: 11/29/2022]  Open
4
Disulfide bridges remain intact while native insulin converts into amyloid fibrils. PLoS One 2012;7:e36989. [PMID: 22675475 PMCID: PMC3365881 DOI: 10.1371/journal.pone.0036989] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2012] [Accepted: 04/11/2012] [Indexed: 11/19/2022]  Open
5
Guerry P, Herrmann T. Comprehensive automation for NMR structure determination of proteins. Methods Mol Biol 2012;831:429-51. [PMID: 22167686 DOI: 10.1007/978-1-61779-480-3_22] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
6
Zeng J, Zhou P, Donald BR. Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data. JOURNAL OF BIOMOLECULAR NMR 2011;50:371-95. [PMID: 21706248 PMCID: PMC3155202 DOI: 10.1007/s10858-011-9522-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 12/02/2010] [Accepted: 05/19/2011] [Indexed: 05/31/2023]
7
Banerjee PR, Puttamadappa SS, Pande A, Shekhtman A, Pande J. Increased hydrophobicity and decreased backbone flexibility explain the lower solubility of a cataract-linked mutant of γD-crystallin. J Mol Biol 2011;412:647-59. [PMID: 21827768 DOI: 10.1016/j.jmb.2011.07.058] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2011] [Revised: 07/22/2011] [Accepted: 07/25/2011] [Indexed: 11/18/2022]
8
Wong LE, Masse JE, Jaravine V, Orekhov V, Pervushin K. Automatic assignment of protein backbone resonances by direct spectrum inspection in targeted acquisition of NMR data. JOURNAL OF BIOMOLECULAR NMR 2008;42:77-86. [PMID: 18784977 DOI: 10.1007/s10858-008-9269-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2008] [Accepted: 08/07/2008] [Indexed: 05/26/2023]
9
Automated structure determination from NMR spectra. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2008;38:129-43. [PMID: 18807026 DOI: 10.1007/s00249-008-0367-z] [Citation(s) in RCA: 183] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2008] [Accepted: 08/28/2008] [Indexed: 10/21/2022]
10
Verdegem D, Dijkstra K, Hanoulle X, Lippens G. Graphical interpretation of Boolean operators for protein NMR assignments. JOURNAL OF BIOMOLECULAR NMR 2008;42:11-21. [PMID: 18762868 DOI: 10.1007/s10858-008-9262-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2008] [Revised: 06/06/2008] [Accepted: 06/09/2008] [Indexed: 05/26/2023]
11
Jaravine VA, Orekhov VY. Targeted acquisition for real-time NMR spectroscopy. J Am Chem Soc 2007;128:13421-6. [PMID: 17031954 DOI: 10.1021/ja062146p] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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