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Abstract
Glycans, carbohydrate molecules in the realm of biology, are present as biomedically important glycoconjugates and a characteristic aspect is that their structures in many instances are branched. In determining the primary structure of a glycan, the sugar components including the absolute configuration and ring form, anomeric configuration, linkage(s), sequence, and substituents should be elucidated. Solution state NMR spectroscopy offers a unique opportunity to resolve all these aspects at atomic resolution. During the last two decades, advancement of both NMR experiments and spectrometer hardware have made it possible to unravel carbohydrate structure more efficiently. These developments applicable to glycans include, inter alia, NMR experiments that reduce spectral overlap, use selective excitations, record tilted projections of multidimensional spectra, acquire spectra by multiple receivers, utilize polarization by fast-pulsing techniques, concatenate pulse-sequence modules to acquire several spectra in a single measurement, acquire pure shift correlated spectra devoid of scalar couplings, employ stable isotope labeling to efficiently obtain homo- and/or heteronuclear correlations, as well as those that rely on dipolar cross-correlated interactions for sequential information. Refined computer programs for NMR spin simulation and chemical shift prediction aid the structural elucidation of glycans, which are notorious for their limited spectral dispersion. Hardware developments include cryogenically cold probes and dynamic nuclear polarization techniques, both resulting in enhanced sensitivity as well as ultrahigh field NMR spectrometers with a 1H NMR resonance frequency higher than 1 GHz, thus improving resolution of resonances. Taken together, the developments have made and will in the future make it possible to elucidate carbohydrate structure in great detail, thereby forming the basis for understanding of how glycans interact with other molecules.
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Affiliation(s)
- Carolina Fontana
- Departamento
de Química del Litoral, CENUR Litoral Norte, Universidad de la República, Paysandú 60000, Uruguay
| | - Göran Widmalm
- Department
of Organic Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden
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2
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Bertho G, Oumezziane IE, Caradeuc C, Guibout L, Balducci C, Dinan L, Dilda PJ, Camelo S, Lafont R, Giraud N. Structural analysis of unstable norbixin isomers guided by pure shift nuclear magnetic resonance. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2022; 60:504-514. [PMID: 35075680 DOI: 10.1002/mrc.5252] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 01/19/2022] [Accepted: 01/20/2022] [Indexed: 06/14/2023]
Abstract
We report the analysis of complex samples obtained during the microwave irradiation/heating of norbixin, which has been identified as a potential therapeutic target for age-related macular degeneration (AMD). In this context, identifying the different isomers that are obtained during its degradation is of primary importance. However, this characterization is challenging because, on the one hand, some of these isomers are unstable, and on the other hand, the 1 H spectra of these isomeric mixtures are poorly resolved. We could successfully apply 1D pure shift experiments to obtain ultrahigh-resolution 1 H nuclear magnetic resonance (NMR) spectra of the norbixin isomer samples and exploit their information content to analyze complementary 2D NMR data and describe accurately their isomeric composition.
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Affiliation(s)
- Gildas Bertho
- Université de Paris, CNRS, Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, Paris, France
| | - Imed Eddine Oumezziane
- Université de Paris, CNRS, Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, Paris, France
| | - Cédric Caradeuc
- Université de Paris, CNRS, Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, Paris, France
| | | | | | | | | | | | - René Lafont
- Biophytis, Sorbonne University, Paris, France
- Paris-Seine Biology Institute (BIOSIPE), CNRS, Sorbonne University, Paris, France
| | - Nicolas Giraud
- Université de Paris, CNRS, Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, Paris, France
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3
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Amirtham S, Prince N, Venkateswarulu M, Chandra Mondal I, Raman S, Raj R, Rajendran E, Jebaraj B, Vaithiyalingam A, Rajasegaran R, Mukadam FA, Bhaskar A, Ghosh S, Conrad J, Beifuss U, Subramani S. Elusive Toxin in Cleistanthus collinus Causing Vasoconstriction and Myocardial Depression: Detailed NMR Analyses and Biological Studies of Cleistanthoside A. ACS OMEGA 2021; 6:24553-24561. [PMID: 34604637 PMCID: PMC8482457 DOI: 10.1021/acsomega.1c03138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
Cleistanthus collinus leaf extracts are consumed for suicidal purposes in southern India. The boiled decoction is known to be more toxic than the fresh leaf juice. Although several compounds have been isolated and their toxicity tested, controversy remains as to which compounds are responsible for the high level of toxicity of C. collinus. We report herein that cleistanthoside A is the major toxin in the boiled aqueous extract of fresh leaves and causes death in rats in small doses. The toxicity of the boiled extract prepared in the manner described can be attributed entirely to cleistanthoside A. Cleistanthin A could also be isolated from the boiled extract, albeit in trace amounts. As hypotension not responding to vasoconstrictors is the cause of death in patients who have consumed the boiled extract, effects of cleistanthoside A on the determinants of blood pressure, namely, force of cardiac contraction and vascular resistance, were tested in isolated organ experiments. Cleistanthoside A has a direct vasoconstrictor effect; however, it inhibits ventricular contractility. Therefore, the notion that the shock in C. collinus poisoning is of vascular origin must be considered carefully, and the possibility of cardiogenic shock must be studied. We present the crystal structure of cleistanthin A and show the potency of fast NMR methods (NOAH4-BSCN-NUS) in the full spectral assignment of cleistanthoside A as a real-world sample of a natural product. We also compare the results of the NOAH4-BSCN-NUS NMR experiments with conventional NMR methods.
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Affiliation(s)
- Soosai
Manickam Amirtham
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
| | - Neetu Prince
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
| | - Mangili Venkateswarulu
- School
of Basic Sciences, Indian Institute of Technology, Mandi, 175005 Himachal Pradesh, India
| | - Iswar Chandra Mondal
- School
of Basic Sciences, Indian Institute of Technology, Mandi, 175005 Himachal Pradesh, India
| | - Swetha Raman
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
| | - Renu Raj
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
| | - Elanchezhian Rajendran
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
| | - Benjamin Jebaraj
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
| | - Abirami Vaithiyalingam
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
| | - Rajalakshmi Rajasegaran
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
| | - Farhan Adam Mukadam
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
| | - Anand Bhaskar
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
| | - Subrata Ghosh
- School
of Basic Sciences, Indian Institute of Technology, Mandi, 175005 Himachal Pradesh, India
| | - Jürgen Conrad
- Institut
für Chemie, Universität Hohenheim, Garbenstrasse 30, Stuttgart D-70599, Germany
| | - Uwe Beifuss
- Institut
für Chemie, Universität Hohenheim, Garbenstrasse 30, Stuttgart D-70599, Germany
| | - Sathya Subramani
- Department
of Physiology, Christian Medical College, Thorapadi post, Vellore, 632002 Tamilnadu, India
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4
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Kakita VMR, Rachineni K, Hosur RV. Ultraclean Pure Shift NMR Spectroscopy with Adiabatic Composite Refocusing Pulses: Application to Metabolite Samples. ChemistrySelect 2019. [DOI: 10.1002/slct.201902238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Veera Mohana Rao Kakita
- UM-DAE-Centre for Excellence in Basic SciencesUniversity of MumbaiKalina Campus, Santacruz 400 098 Mumbai India
| | - Kavitha Rachineni
- Department of Biosciences and BioengineeringIndian Institute of Technology Bombay, Powai 400076 Mumbai India
| | - Ramakrishna V Hosur
- UM-DAE-Centre for Excellence in Basic SciencesUniversity of MumbaiKalina Campus, Santacruz 400 098 Mumbai India
- Department of Biosciences and BioengineeringIndian Institute of Technology Bombay, Powai 400076 Mumbai India
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