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Xu Y, Chen X, Fan S, Zhang T, Yang B, Li Z, Yamaguchi S, Zhang D. Effect of Molecular Weight of Fluorescent Dyes on DNA Separation by Capillary Electrophoresis. J Fluoresc 2025:10.1007/s10895-025-04239-5. [PMID: 40080297 DOI: 10.1007/s10895-025-04239-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2024] [Accepted: 02/28/2025] [Indexed: 03/15/2025]
Abstract
Capillary electrophoresis (CE) plays an important role in the quality control of dsDNA. So far, there has been various fluorescent dyes employed for the separation of dsDNA by CE. However, the molecular weight of the dyes may affect the mass to charge ratio of dsDNA-dye complex, consequently the separation performance of dsDNA will be changed. Herein, we systematically compared the fluorescent intensity and migration times when separating the dsDNA fragments labeled or intercalated by different dyes. Results showed that the concentration of SYBR Green I affected the migration times more than Gel Green and EvaGreen, which may be caused by the lower molecular weight of EvaGreen. The optimal concentration for SYBR Green I and Gel Green is 1×, and it is 0.005× for EvaGreen. There is linear relationship between dsDNA concentration (0.1-0.5 ng/µL) and fluorescence intensity when using SYBR Green I or Gel Green for separation. Finally, we have resolved the фX174-Hinc II digest in 0.5% HEC (1300k) containing 1× SYBR within 12 min, even though there is only 6 bp difference for the adjacent dsDNA fragments. Furthermore, we also obtained the virtual dsDNA bands by OpenCV according to the electropherogram.
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Affiliation(s)
- Yuqing Xu
- Engineering Research Center of Optical Instrument and System, Shanghai Key Lab of Modern Optical System, Ministry of Education, University of Shanghai for Science and Technology, No. 516 JunGong Road, Shanghai, 200093, China
| | - Xin Chen
- Department of Ophthalmology and Vision Science, Eye and ENT Hospital of Fudan University, Shanghai, China
| | - Shuaiqiang Fan
- Engineering Research Center of Optical Instrument and System, Shanghai Key Lab of Modern Optical System, Ministry of Education, University of Shanghai for Science and Technology, No. 516 JunGong Road, Shanghai, 200093, China
| | - Ting Zhang
- Key Laboratory of Myopia of State Health Ministry, and Key Laboratory of Visual Impairment and Restoration of Shanghai, Shanghai, China
| | - Bo Yang
- Engineering Research Center of Optical Instrument and System, Shanghai Key Lab of Modern Optical System, Ministry of Education, University of Shanghai for Science and Technology, No. 516 JunGong Road, Shanghai, 200093, China
| | - Zhenqing Li
- Engineering Research Center of Optical Instrument and System, Shanghai Key Lab of Modern Optical System, Ministry of Education, University of Shanghai for Science and Technology, No. 516 JunGong Road, Shanghai, 200093, China.
| | - Shintaro Yamaguchi
- Graduate School of Engineering, Department of Advanced Engineering, Chemistry and Materials Engineering Program, Nagasaki University, Nagasaki City, 852-8521, Japan
| | - Dawei Zhang
- Engineering Research Center of Optical Instrument and System, Shanghai Key Lab of Modern Optical System, Ministry of Education, University of Shanghai for Science and Technology, No. 516 JunGong Road, Shanghai, 200093, China
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Recio-Aldavero J, Parra-Gutiérrez L, Muñoz-Moreno L, Román ID, Arenas MI, Bajo AM. Characterisation of Castration-Resistant Cell-Derived Exosomes and Their Effect on the Metastatic Phenotype. Cancers (Basel) 2025; 17:141. [PMID: 39796768 PMCID: PMC11719961 DOI: 10.3390/cancers17010141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Revised: 12/17/2024] [Accepted: 12/31/2024] [Indexed: 01/13/2025] Open
Abstract
BACKGROUND/OBJECTIVES Prostate cancer (PCa) is characterised by its progression to a metastatic and castration-resistant phase. Prostate tumour cells release small extracellular vesicles or exosomes which are taken up by target cells and can potentially facilitate tumour growth and metastasis. The present work studies the effect of exosomes from cell lines that are representative of the different stages of the disease on the tumoral phenotype of PC3 cells. METHODS Exosomes were isolated by ultracentrifugation from human prostate epithelial cells (RWPE-1) and androgen-dependent PCa cells (LNCaP) and castration-resistant PCa cells (CRPC) with moderate (DU145) or high (PC3) metastatic capacity. The biophysical and biochemical properties of the exosomes were characterised as well as their effects on PC3 cell viability and migration. RESULTS The study of the exosomes of prostate cell lines shows heterogeneity in their size, presenting in some of them two types of populations; in both populations, a larger size in those derived from PC3 cells and a smaller size in those derived from non-tumourigenic prostate cells were detected. Differences were found in the physical properties of those derived from healthy and PCa cells, as well as between cells representative of the most aggressive stages of the disease. The highest gamma-glutamyl transferase (GGT) activity was observed in androgen-dependent cells and differences in the pro-metalloproteinases (MMP) activity were detected in healthy cells and in castration-resistant cells with moderate metastatic capacity with respect to PC3 cells. The treatment of PC3 cells with their own exosomes increased PC3 cell viability and migration. CONCLUSION Exosomes represent a promising field of research in the diagnosis, prognosis, and treatment of prostate cancer.
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Affiliation(s)
- Jorge Recio-Aldavero
- Unidad de Bioquímica y Biología Molecular, Departamento de Biología de Sistemas, Campus Científico-Tecnológico, Universidad de Alcalá, 28805 Alcalá de Henares, Spain
| | - Lorena Parra-Gutiérrez
- Unidad de Bioquímica y Biología Molecular, Departamento de Biología de Sistemas, Campus Científico-Tecnológico, Universidad de Alcalá, 28805 Alcalá de Henares, Spain
| | - Laura Muñoz-Moreno
- Unidad de Bioquímica y Biología Molecular, Departamento de Biología de Sistemas, Campus Científico-Tecnológico, Universidad de Alcalá, 28805 Alcalá de Henares, Spain
| | - Irene D. Román
- Unidad de Bioquímica y Biología Molecular, Departamento de Biología de Sistemas, Campus Científico-Tecnológico, Universidad de Alcalá, 28805 Alcalá de Henares, Spain
| | - María Isabel Arenas
- Unidad de Biología Celular, Departamento de Biomedicina y Biotecnología, Campus Científico-Tecnológico, Universidad de Alcalá, 28805 Alcalá de Henares, Spain
| | - Ana M. Bajo
- Unidad de Bioquímica y Biología Molecular, Departamento de Biología de Sistemas, Campus Científico-Tecnológico, Universidad de Alcalá, 28805 Alcalá de Henares, Spain
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