Calcium-manganese oxides as structural and functional models for active site in oxygen evolving complex in photosystem II: Lessons from simple models

Genome skimming approach reveals the gene arrangements in the chloroplast genomes of the highly endangered Crocus L. species: Crocus istanbulensis (B.Mathew) Rukšāns

Crocus istanbulensis (B.Mathew) Rukšāns is one of the most endangered Crocus species in the world and has an extremely limited distribution range in Istanbul. Our recent field work indicates that no more than one hundred individuals remain in the wild. In the present study, we used genome skimming to determine the complete chloroplast (cp) genome sequences of six C. istanbulensis individuals collected from the locus classicus. The cp genome of C. istanbulensis has 151,199 base pairs (bp), with a large single-copy (LSC) (81,197 bp), small single copy (SSC) (17,524 bp) and two inverted repeat (IR) regions of 26,236 bp each. The cp genome contains 132 genes, of which 86 are protein-coding (PCGs), 8 are rRNA and 38 are tRNA genes. Most of the repeats are found in intergenic spacers of Crocus species. Mononucleotide repeats were most abundant, accounting for over 80% of total repeats. The cp genome contained four palindrome repeats and one forward repeat. Comparative analyses among other Iridaceae species identified one inversion in the terminal positions of LSC region and three different gene (psbA, rps3 and rpl22) arrangements in C. istanbulensis that were not reported previously. To measure selective pressure in the exons of chloroplast coding sequences, we performed a sequence analysis of plastome-encoded genes. A total of seven genes (accD, rpoC2, psbK, rps12, ccsA, clpP and ycf2) were detected under positive selection in the cp genome. Alignment-free sequence comparison showed an extremely low sequence diversity across naturally occurring C. istanbulensis specimens. All six sequenced individuals shared the same cp haplotype. In summary, this study will aid further research on the molecular evolution and development of ex situ conservation strategies of C. istanbulensis.

Recent Advances of First d-Block Metal-Based Perovskite Oxide Electrocatalysts for Alkaline Water Splitting

First d-block metal-based perovskite oxides (FDMPOs) have garnered significant attention in research for their utilization in the water oxidation reaction due to their low cost, earth abundance, and promising activities. Recently, FDMPOs are being applied in electrocatalysis for the hydrogen evolution reaction (HER) and overall water splitting reaction. Numerous promising FDMPO-based water splitting electrocatalysts have been reported, along with new catalytic mechanisms. Therefore, an in-time summary of the current progress of FDMPO-based water splitting electrocatalysts is now considered imperative. However, few reviews have focused on this particular subject thus far. In this contribution, we review the most recent advances (mainly within the years 2014–2020) of FDMPO electrocatalysts for alkaline water splitting, which is widely considered to be the most promising next-generation technology for future large-scale hydrogen production. This review begins with an introduction describing the fundamentals of alkaline water electrolysis and perovskite oxides. We then carefully elaborate on the various design strategies used for the preparation of FDMPO electrocatalysts applied in the alkaline water splitting reaction, including defecting engineering, strain tuning, nanostructuring, and hybridization. Finally, we discuss the current advances of various FDMPO-based water splitting electrocatalysts, including those based on Co, Ni, Fe, Mn, and other first d-block metal-based catalysts. By conveying various methods, developments, perspectives, and challenges, this review will contribute toward the understanding and development of FDMPO electrocatalysts for alkaline water splitting.

Ultrasound-accelerated synthesis of uniform SrMnO3 nanoparticles as water-oxidizing catalysts for water splitting systems

One of the major issue in the 21st century is the humans request to green energy. The best form of green, sustainable and safe energy is hydrogen source due to its ecological and economical aspects. Herein, In order to obtain a highly water-oxidizing catalysts for water splitting systems, the sonochemical procedure applied for fabrication of practical SrMnO₃ nanoparticles. Also, the influence of various green capping agents (fruit juices and vegetable wastes) was studied on the formation of uniform particles. In the present work ultrasonic probe with 60 W/cm² intensity and 18 kHz frequency was used for sample synthesis. Further, catalytic behavior of these nanomaterials investigated in water splitting reaction for O₂ evolution by modifying the operational variables. The best catalytic behavior observed by those nanoparticles that indicated the smallest size and the most uniform morphology (Max amount of TON = 7.556). By utilizing the ultrasonic irradiation, the catalytic behavior of SrMnO₃ nanoparticles improved (TON (ultrasonic bath) = 8.430, TON (ultrasonic probe) = 11.315). Therefore, nano-SrMnO₃ was introduced as an efficient and novel nanocatalyst for O₂ evolution reaction.

BaMnO3 nanostructures: Simple ultrasonic fabrication and novel catalytic agent toward oxygen evolution of water splitting reaction

In the current paper, the main aim is to fabricate the BaMnO₃ nanostructures via the sonochemical route. The various factor, including precursors, reaction time and power of sonication can affect the shape, size, and purity of the samples. We utilized X-ray diffraction (XRD), scanning electron microscope (SEM), transmission electron microscopy (TEM), Fourier transform infrared spectroscopy (FT-IR), and X-ray energy dispersive spectroscopy (EDS) to characterize the BaMnO₃ nanostructures. The optical property of BaMnO₃ nanostructures was explored by Ultraviolet-visible spectroscopy (UV-vis) and the energy gap was suitable for catalytic activity (about 2.75 eV). Changing the precursor can affect the size, nanoparticle shape, architectures, and uniformity of the samples. We employed the BaMnO₃ nanostructures for O₂ evolution reaction as catalysts. It can observe that increasing the homogeneity of the catalysts can increase the efficiency of the Oxygen evolution reaction. The maximum amount of the O₂ evolution and the highest TOF and TON are related to nanoplate disc using barium salicylate as a precursor of barium. As a result, we can nominate the BaMnO₃ nanostructures as an effective and novel catalyst for water-splitting reaction.

Comparative evaluation of the structural and other features governing photo-electrochemical oxygen evolution by Ca/Mn oxides

Bio-inspired calcium manganate ceramics induce higher photocurrents than MnO₂ in photo-electrochemical water splitting.

Evolutionary Analysis of Unicellular Species in Chlamydomonadales Through Chloroplast Genome Comparison With the Colonial Volvocine Algae

This study is the first determination of six chloroplast genomes of colonial volvocine algae, Colemanosphaera charkowiensis, Volvulina compacta, Pandorina colemaniae, Pandorina morum, Colemanosphaera angeleri, and Yamagishiella unicocca. Based on 55 chloroplast protein-coding genes, we compared the nonsynonymous (dN) and synonymous (dS) substitution rates between colonial volvocine algae and the other unicellular Chlamydomonadales species. When refer to the dN, we found 27 genes were significantly different, among them, 19 genes were significant higher in unicellular species (FDR-adjusted P < 0.05). When refer to the dS, we found 10 genes were significantly different, among them, 6 genes were significant higher in unicellular species (FDR-adjusted P < 0.05). Then we identified 14 putative fast-evolving genes and 11 putative positively selected genes of unicellular species, we analyzed the function of positively selected sites of the overlap genes of putative fast-evolving and positively selected genes, and found some sites were close to the important functional region of the proteins. Photosynthesis is the process to transform and store solar energy by chloroplast, it plays a vital role in the survival of algae, this study is the first to use the chloroplast genomes to analysis the evolutionary relationship between colonial and unicellular species in Chlamydomonadales. We found more genes have higher substitution rates in unicellular species and proposed that the fast-evolving and positively selected two genes, psbA and psbC, may help to improve the photosynthetic efficiency of unicellular species in Chlamydomonadales.

Photo-Electrochemical Oxygen Evolution Reaction by Biomimetic CaMn2O4 Catalyst

Calcium manganese oxide catalysts are a new class of redox catalysts with significant importance because of their structural similarity to natural oxygen-evolving complex in plant cells and the earth-abundant elemental constituents. In the present study, the photo-electrocatalytic properties of CaMn2O4 in water-splitting were investigated. CaMn2O4 powders with irregular shapes and nanowire shapes were synthesised using mechanochemical processing and a hydrothermal method, respectively. The anode in a photo-electrochemical cell was fabricated by embedding CaMn2O4 powders within polypyrrole. The results showed that CaMn2O4 induced a higher dark and light current in comparison to the control sample (polypyrrole alone). CaMn2O4 nanowires exhibited higher dark and light current in comparison to irregular-shaped CaMn2O4 powders. The difference was attributable to the higher surface area of nanowires compared to the irregular-shaped particles, rather than the difference in exposed crystal facets.

Sonochemical synthesis of SrMnO3 nanoparticles as an efficient and new catalyst for O2 evolution from water splitting reaction

The principal focus of this investigation is to prepare the SrMnO₃ nanostructures by different chemical methods such as ultrasonic, co-precipitation, microwave, and hydrothermal methods. The influence of calcination temperature, and ultrasound irradiation power, and the presence of surfactant investigated on morphology and size of SrMnO₃ nanostructures. As-prepared nanoparticles were characterized by X-ray diffraction (XRD), scanning electron microscope (SEM), transmission electron microscopy (TEM), Fourier transform infrared spectroscopy (FT-IR), X-ray energy dispersive spectroscopy (EDS) and ultraviolet-visible (UV-Vis) spectroscopy. The results indicated that by changing in method and reaction condition, product appeared in different size, morphology, and uniformity. The morphology and size of nanostructures have been influenced on the properties of nano-SrMnO₃. For investigation of properties, the SrMnO₃ was used in catalytic water splitting for O₂ evolution in presence of (NH₄)₂Ce(NO₃)_6. The effect of nano-catalysts and the concentration of (NH₄)₂Ce(NO₃)₆ have been studied on O₂ evolution reaction. Results show that the efficiency of water splitting increased by enhancement in the size and uniformity of catalysts and introduced the SrMnO₃ as a new and efficient catalyst for O₂ evolution reaction.

Links between peptides and Mn oxide: nano-sized manganese oxide embedded in a peptide matrix

We report on a poly-peptide/Mn oxide nanocomposite as a model for the water-oxidizing catalyst in Photosystem II.

Nanosized manganese oxide/holmium oxide: a new composite for water oxidation

Ho₂O₃ as a support for nanosized Mn oxide was used for the synthesis of a new water-oxidizing catalyst.

Nanolayered manganese oxides: insights from inorganic electrochemistry

The electrochemistry of nanolayered Mn oxides in the presence of LiClO₄ at pH = 6.3 under different conditions was studied.

A new strategy to make an artificial enzyme: photosystem II around nanosized manganese oxide

A new strategy to make an artificial enzyme was reported.

'Photosystem II: the water splitting enzyme of photosynthesis and the origin of oxygen in our atmosphere'

About 3 billion years ago an enzyme emerged which would dramatically change the chemical composition of our planet and set in motion an unprecedented explosion in biological activity. This enzyme used solar energy to power the thermodynamically and chemically demanding reaction of water splitting. In so doing it provided biology with an unlimited supply of reducing equivalents needed to convert carbon dioxide into the organic molecules of life while at the same time produced oxygen to transform our planetary atmosphere from an anaerobic to an aerobic state. The enzyme which facilitates this reaction and therefore underpins virtually all life on our planet is known as Photosystem II (PSII). It is a pigment-binding, multisubunit protein complex embedded in the lipid environment of the thylakoid membranes of plants, algae and cyanobacteria. Today we have detailed understanding of the structure and functioning of this key and unique enzyme. The journey to this level of knowledge can be traced back to the discovery of oxygen itself in the 18th-century. Since then there has been a sequence of mile stone discoveries which makes a fascinating story, stretching over 200 years. But it is the last few years that have provided the level of detail necessary to reveal the chemistry of water oxidation and O-O bond formation. In particular, the crystal structure of the isolated PSII enzyme has been reported with ever increasing improvement in resolution. Thus the organisational and structural details of its many subunits and cofactors are now well understood. The water splitting site was revealed as a cluster of four Mn ions and a Ca ion surrounded by amino-acid side chains, of which seven provide direct ligands to the metals. The metal cluster is organised as a cubane structure composed of three Mn ions and a Ca2+ linked by oxo-bonds with the fourth Mn ion attached to the cubane. This structure has now been synthesised in a non-protein environment suggesting that it is a totally inorganic precursor for the evolution of the photosynthetic oxygen-evolving complex. In summary, the overall structure of the catalytic site has given a framework on which to build a mechanistic scheme for photosynthetic dioxygen generation and at the same time provide a blue-print and incentive to develop catalysts for artificial photo-electrochemical systems to split water and generate renewable solar fuels.

Manganese oxide supported on gold/iron as a water-oxidizing catalyst in artificial photosynthetic systems

Herein, a new conductive, recyclable, highly dispersible, magnetically separable, environmentally friendly, and nano-sized catalyst for water oxidation is reported.

Nanolayered manganese oxide/C(60) composite: a good water-oxidizing catalyst for artificial photosynthetic systems

For the first time, we considered Mn oxide/C60 composites as water-oxidizing catalysts. The composites were synthesized by easy and simple procedures, and characterized by some methods. The water-oxidizing activities of these composites were also measured in the presence of cerium(iv) ammonium nitrate. We found that the nanolayered Mn oxide/C60 composites show promising activity toward water oxidation.

The role of nano-sized manganese oxides in the oxygen-evolution reactions by manganese complexes: towards a complete picture

Eighteen Mn complexes with N-donor and carboxylate ligands have been synthesized and characterized. Three Mn complexes among them are new and are reported for the first time. The reactions of oxygen evolution in the presence of oxone (2KHSO5·KHSO4·K2SO4) and cerium(iv) ammonium nitrate catalyzed by these complexes are studied and characterized by UV-visible spectroscopy, X-ray diffraction spectrometry, dynamic light scattering, Fourier transform infrared spectroscopy, electron paramagnetic resonance spectroscopy, transmission electron microscopy, scanning electron microscopy, membrane-inlet mass spectrometry and electrochemistry. Some of these complexes evolve oxygen in the presence of oxone as a primary oxidant. CO2 and MnO4(-) are other products of these reactions. Based on spectroscopic studies, the true catalysts for oxygen evolution in these reactions are different. We proposed that for the oxygen evolution reactions in the presence of oxone, the true catalysts are both high valent Mn complexes and Mn oxides, but for the reactions in the presence of cerium(iv) ammonium nitrate, the active catalyst is most probably a Mn oxide.

Nanostructured manganese oxide/carbon nanotubes, graphene and graphene oxide as water-oxidizing composites in artificial photosynthesis

Herein, we report on nano-sized Mn oxide/carbon nanotubes, graphene and graphene oxide as water-oxidizing compounds in artificial photosynthesis. The composites are synthesized by different and simple procedures and characterized by a number of methods. The water-oxidizing activities of these composites are also considered in the presence of cerium(IV) ammonium nitrate. Some composites are efficient Mn-based catalysts with TOF (mmol O2 per mol Mn per second) ~ 2.6.

Gold nanorods or nanoparticles deposited on layered manganese oxide: new findings

Our results show that nano-sized gold has no significant effect on the water-oxidation activity of the Mn oxide phase in the presence of Ce(iv).

Nano-sized Mn oxides on halloysite or high surface area montmorillonite as efficient catalysts for water oxidation with cerium(iv) ammonium nitrate: support from natural sources

We used halloysite, a nano-sized natural mineral and high surface area montmorillonite as supports for nano-sized Mn oxides to synthesize efficient water-oxidising catalysts.

Nanostructured manganese oxides as highly active water oxidation catalysts: a boost from manganese precursor chemistry

We present a facile synthesis of bioinspired manganese oxides for chemical and photocatalytic water oxidation, starting from a reliable and versatile manganese(II) oxalate single-source precursor (SSP) accessible through an inverse micellar molecular approach. Strikingly, thermal decomposition of the latter precursor in various environments (air, nitrogen, and vacuum) led to the three different mineral phases of bixbyite (Mn2 O3 ), hausmannite (Mn3 O4 ), and manganosite (MnO). Initial chemical water oxidation experiments using ceric ammonium nitrate (CAN) gave the maximum catalytic activity for Mn2 O3 and MnO whereas Mn3 O4 had a limited activity. The substantial increase in the catalytic activity of MnO in chemical water oxidation was demonstrated by the fact that a phase transformation occurs at the surface from nanocrystalline MnO into an amorphous MnOx (1<x<2) upon treatment with CAN, which acted as an oxidizing agent. Photocatalytic water oxidation in the presence of [Ru(bpy)3 ](2+) (bpy=2,2'-bipyridine) as a sensitizer and peroxodisulfate as an electron acceptor was carried out for all three manganese oxides including the newly formed amorphous MnOx . Both Mn2 O3 and the amorphous MnOx exhibit tremendous enhancement in oxygen evolution during photocatalysis and are much higher in comparison to so far known bioinspired manganese oxides and calcium-manganese oxides. Also, for the first time, a new approach for the representation of activities of water oxidation catalysts has been proposed by determining the amount of accessible manganese centers.

Mn oxide/nanodiamond composite: a new water-oxidizing catalyst for water oxidation

Herein, we reported nanosized Mn oxide/nanodiamond composites as water-oxidizing compounds.

A light harvesting mononuclear manganese(ii) complex: synthesis, characterization, DFT and TDDFT calculations and photophysical profile

A new manganese(ii) [Mn^II(DEMP)(NCS)(H₂O)] (DEMP = Schiff base derived from salicylaldehyde and 2-diethylaminoethylamine) complex has been synthesized and characterized. The complex absorbs light ranging from 200–850 nm. Thus, the molecule is capable of harvesting the entire range of sunlight falling on earth.

An approach for catalyst design in artificial photosynthetic systems: focus on nanosized inorganic cores within proteins

Some enzymes can be considered as a catalyst having a nanosized inorganic core in a protein matrix. In some cases, the metal oxide or sulfide clusters, which can be considered as cofactors in enzymes, may be recruited for use in other related reactions in artificial photosynthetic systems. In other words, one approach to design efficient and environmentally friendly catalysts in artificial photosynthetic systems for the purpose of utilizing sunlight to generate high energy intermediates or useful material is to select and utilize inorganic cores of enzymes. For example, one of the most important goals in developing artificial photosynthesis is hydrogen production. However, first, it is necessary to find a "super catalyst" for water oxidation, which is the most challenging half reaction of water splitting. There is an efficient system for water oxidation in cyanobacteria, algae, and plants. Published data on the Mn-Ca cluster have provided details on the mechanism and structure of the water oxidizing complex as a Mn-Ca nanosized inorganic core in photosystem II. Progress has been made in introducing Mn-Ca oxides as efficient catalysts for water oxidation in artificial photosynthetic systems. Here, in the interest of designing efficient catalysts for other important reactions in artificial photosynthesis, a few examples of our knowledge of inorganic cores of proteins, and how Nature used them for important reactions, are discussed.

A 2-(2-hydroxyphenyl)-1H-benzimidazole-manganese oxide hybrid as a promising structural model for the tyrosine 161/histidine 190-manganese cluster in photosystem II

In this communication, we report the synthesis, characterization, and electrochemistry of a 2-(2-hydroxyphenyl)-1H-benzimidazole-manganese oxide hybrid. Our results suggest that this compound is a promising model for the manganese cluster together with tyrosine-161 and histidine-190 in photosystem II of plants, algae and cyanobacteria.

Biological water-oxidizing complex: a nano-sized manganese-calcium oxide in a protein environment

The resolution of Photosystem II (PS II) crystals has been improved using isolated PS II from the thermophilic cyanobacterium Thermosynechococcus vulcanus. The new 1.9 Å resolution data have provided detailed information on the structure of the water-oxidizing complex (Umena et al. Nature 473: 55-61, 2011). The atomic level structure of the manganese-calcium cluster is important for understanding the mechanism of water oxidation and to design an efficient catalyst for water oxidation in artificial photosynthetic systems. Here, we have briefly reviewed our knowledge of the structure and function of the cluster.

Biomineralization: a proposed evolutionary origin for inorganic cofactors of enzymes

In this paper, three different reactions of nanoparticles and proteins are explained. As a model system, the interactions of birnessite, which is a common manganese oxide in the environment, and bovine serum albumin, as a protein that has a strong affinity for a variety of inorganic molecules, are studied. The author proposes that the cofactor-formation in particular enzymes may be considered as a biomineralization in the presence of the protein. One of the numerous and very small nanoparticles produced in the presence of protein could be formed in an appropriate location in proteins and be used as a primitive inorganic core (cofactor) of enzyme.

Nano-sized manganese oxides as biomimetic catalysts for water oxidation in artificial photosynthesis: a review

There has been a tremendous surge in research on the synthesis of various metal compounds aimed at simulating the water-oxidizing complex (WOC) of photosystem II (PSII). This is crucial because the water oxidation half reaction is overwhelmingly rate-limiting and needs high over-voltage (approx. 1 V), which results in low conversion efficiencies when working at current densities required for hydrogen production via water splitting. Particular attention has been given to the manganese compounds not only because manganese has been used by nature to oxidize water but also because manganese is cheap and environmentally friendly. The manganese-calcium cluster in PSII has a dimension of about approximately 0.5 nm. Thus, nano-sized manganese compounds might be good structural and functional models for the cluster. As in the nanometre-size of the synthetic models, most of the active sites are at the surface, these compounds could be more efficient catalysts than micrometre (or bigger) particles. In this paper, we focus on nano-sized manganese oxides as functional and structural models of the WOC of PSII for hydrogen production via water splitting and review nano-sized manganese oxides used in water oxidation by some research groups.

Biological water oxidation: lessons from nature

Hydrogen production by water splitting may be an appealing solution for future energy needs. To evolve hydrogen efficiently in a sustainable manner, it is necessary first to synthesize what we may call a 'super catalyst' for water oxidation, which is the more challenging half reaction of water splitting. An efficient system for water oxidation exists in the water oxidizing complex in cyanobacteria, algae and plants; further, recently published data on the Manganese-calcium cluster have provided details on the mechanism and structure of the water oxidizing complex. Here, we have briefly reviewed the characteristics of the natural system from the standpoint of what we could learn from it to produce an efficient artificial system. In short, to design an efficient water oxidizing complex for artificial photosynthesis, we must learn and use wisely the knowledge about water oxidation and the water oxidizing complex in the natural system. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial.