• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4597351)   Today's Articles (5546)   Subscriber (49348)
For: Bajaj C, Yu Z, Auer M. Volumetric feature extraction and visualization of tomographic molecular imaging. J Struct Biol 2004;144:132-43. [PMID: 14643216 DOI: 10.1016/j.jsb.2003.09.037] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Number Cited by Other Article(s)
1
Electron tomography and immunogold labeling of plant cells. Methods Cell Biol 2020;160:21-36. [PMID: 32896317 DOI: 10.1016/bs.mcb.2020.06.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
2
Ali RA, Mehdi AM, Rothnagel R, Hamilton NA, Gerle C, Landsberg MJ, Hankamer B. RAZA: A Rapid 3D z-crossings algorithm to segment electron tomograms and extract organelles and macromolecules. J Struct Biol 2017;200:73-86. [PMID: 29032142 DOI: 10.1016/j.jsb.2017.10.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Revised: 10/06/2017] [Accepted: 10/09/2017] [Indexed: 11/30/2022]
3
Dinov ID. Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data. Gigascience 2016;5:12. [PMID: 26918190 PMCID: PMC4766610 DOI: 10.1186/s13742-016-0117-6] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Accepted: 02/09/2016] [Indexed: 11/25/2022]  Open
4
Page C, Hanein D, Volkmann N. Accurate membrane tracing in three-dimensional reconstructions from electron cryotomography data. Ultramicroscopy 2015;155:20-26. [PMID: 25863868 DOI: 10.1016/j.ultramic.2015.03.021] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2014] [Revised: 03/19/2015] [Accepted: 03/27/2015] [Indexed: 01/19/2023]
5
Tsai WT, Hassan A, Sarkar P, Correa J, Metlagel Z, Jorgens DM, Auer M. From voxels to knowledge: a practical guide to the segmentation of complex electron microscopy 3D-data. J Vis Exp 2014:e51673. [PMID: 25145678 PMCID: PMC4448944 DOI: 10.3791/51673] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]  Open
6
Combined approaches to flexible fitting and assessment in virus capsids undergoing conformational change. J Struct Biol 2013;185:427-39. [PMID: 24333899 PMCID: PMC3988922 DOI: 10.1016/j.jsb.2013.12.003] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2013] [Revised: 11/28/2013] [Accepted: 12/06/2013] [Indexed: 01/25/2023]
7
Remis JP, Wei D, Gorur A, Zemla M, Haraga J, Allen S, Witkowska HE, Costerton JW, Berleman JE, Auer M. Bacterial social networks: structure and composition of Myxococcus xanthus outer membrane vesicle chains. Environ Microbiol 2013;16:598-610. [PMID: 23848955 DOI: 10.1111/1462-2920.12187] [Citation(s) in RCA: 102] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Accepted: 06/08/2013] [Indexed: 11/30/2022]
8
Gopinath A, Xu G, Ress D, Öktem O, Subramaniam S, Bajaj C. Shape-based regularization of electron tomographic reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2012;31:2241-52. [PMID: 22922711 PMCID: PMC3513577 DOI: 10.1109/tmi.2012.2214229] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
9
Fernandez JJ. Computational methods for electron tomography. Micron 2012;43:1010-30. [DOI: 10.1016/j.micron.2012.05.003] [Citation(s) in RCA: 86] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2012] [Revised: 05/08/2012] [Accepted: 05/08/2012] [Indexed: 01/13/2023]
10
Pietra F. Putative binding sites, and pathways to them, for amidine and guanidine current inhibitors on acid-sensing ion channels (ASIC). A theoretical approach with hASIC1a homology model. Chem Biodivers 2012;9:331-51. [PMID: 22344909 DOI: 10.1002/cbdv.201100260] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
11
Volkmann N. Methods for segmentation and interpretation of electron tomographic reconstructions. Methods Enzymol 2010;483:31-46. [PMID: 20888468 DOI: 10.1016/s0076-6879(10)83002-2] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
12
Three-dimensional macromolecular organization of cryofixed Myxococcus xanthus biofilms as revealed by electron microscopic tomography. J Bacteriol 2009;191:2077-82. [PMID: 19168614 DOI: 10.1128/jb.01333-08] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
13
Yu Z, Holst MJ, Hayashi T, Bajaj CL, Ellisman MH, McCammon JA, Hoshijima M. Three-dimensional geometric modeling of membrane-bound organelles in ventricular myocytes: bridging the gap between microscopic imaging and mathematical simulation. J Struct Biol 2008;164:304-13. [PMID: 18835449 DOI: 10.1016/j.jsb.2008.09.004] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2008] [Revised: 09/09/2008] [Accepted: 09/10/2008] [Indexed: 10/21/2022]
14
Bajaj C, DiCarlo A, Paoluzzi A. PROTO-PLASM: parallel language for adaptive and scalable modelling of biosystems. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2008;366:3045-3065. [PMID: 18559320 PMCID: PMC3342764 DOI: 10.1098/rsta.2008.0076] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
15
Nguyen H, Ji Q. Shape-driven three-dimensional watersnake segmentation of biological membranes in electron tomography. IEEE TRANSACTIONS ON MEDICAL IMAGING 2008;27:616-628. [PMID: 18450535 DOI: 10.1109/tmi.2007.912390] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
16
Three-dimensional architecture of hair-bundle linkages revealed by electron-microscopic tomography. J Assoc Res Otolaryngol 2008;9:215-24. [PMID: 18421501 DOI: 10.1007/s10162-008-0114-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2007] [Accepted: 01/23/2008] [Indexed: 10/22/2022]  Open
17
Garduño E, Wong-Barnum M, Volkmann N, Ellisman MH. Segmentation of electron tomographic data sets using fuzzy set theory principles. J Struct Biol 2008;162:368-79. [PMID: 18358741 DOI: 10.1016/j.jsb.2008.01.017] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2007] [Revised: 01/25/2008] [Accepted: 01/30/2008] [Indexed: 11/24/2022]
18
Salvi E, Cantele F, Zampighi L, Fain N, Pigino G, Zampighi G, Lanzavecchia S. JUST (Java User Segmentation Tool) for semi-automatic segmentation of tomographic maps. J Struct Biol 2007;161:287-97. [PMID: 17707657 PMCID: PMC2692284 DOI: 10.1016/j.jsb.2007.06.011] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2007] [Revised: 05/16/2007] [Accepted: 06/21/2007] [Indexed: 10/23/2022]
19
Li H, Yezzi A. Local or global minima: flexible dual-front active contours. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE 2007;29:1-14. [PMID: 17108379 DOI: 10.1109/tpami.2007.250595] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
20
Uhl JF, Plaisant O, Ami O, Delmas V. [3D modeling in the field of morphology: methods, interest and results]. Morphologie 2006;90:5-20. [PMID: 16929816 DOI: 10.1016/s1286-0115(06)74313-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
21
Jiang M, Ji Q, McEwen BF. Model-based automated extraction of microtubules from electron tomography volume. ACTA ACUST UNITED AC 2006;10:608-17. [PMID: 16871731 DOI: 10.1109/titb.2006.872042] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
22
Frey TG, Perkins GA, Ellisman MH. Electron tomography of membrane-bound cellular organelles. ACTA ACUST UNITED AC 2006;35:199-224. [PMID: 16689634 DOI: 10.1146/annurev.biophys.35.040405.102039] [Citation(s) in RCA: 87] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
23
Jiang M, Ji Q, McEwen BF. Automated extraction of fine features of kinetochore microtubules and plus-ends from electron tomography volume. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2006;15:2035-48. [PMID: 16830922 DOI: 10.1109/tip.2006.877054] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
24
Baker ML, Yu Z, Chiu W, Bajaj C. Automated segmentation of molecular subunits in electron cryomicroscopy density maps. J Struct Biol 2006;156:432-41. [PMID: 16908194 DOI: 10.1016/j.jsb.2006.05.013] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2006] [Revised: 05/25/2006] [Accepted: 05/26/2006] [Indexed: 10/24/2022]
25
Hohmann-Marriott MF, Uchida M, van de Meene AML, Garret M, Hjelm BE, Kokoori S, Roberson RW. Application of electron tomography to fungal ultrastructure studies. THE NEW PHYTOLOGIST 2006;172:208-20. [PMID: 16995909 DOI: 10.1111/j.1469-8137.2006.01868.x] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
26
Yu Z, Bajaj C. Automatic ultrastructure segmentation of reconstructed cryoEM maps of icosahedral viruses. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2005;14:1324-37. [PMID: 16190468 DOI: 10.1109/tip.2005.852770] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
27
Marsh BJ. Lessons from tomographic studies of the mammalian Golgi. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2005;1744:273-92. [PMID: 15896857 DOI: 10.1016/j.bbamcr.2005.04.002] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2005] [Revised: 04/11/2005] [Accepted: 04/11/2005] [Indexed: 11/22/2022]
28
Ress DB, Harlow ML, Marshall RM, McMahan UJ. Methods for generating high-resolution structural models from electron microscope tomography data. Structure 2005;12:1763-74. [PMID: 15458626 PMCID: PMC4312110 DOI: 10.1016/j.str.2004.07.022] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
29
Frangakis AS, Förster F. Computational exploration of structural information from cryo-electron tomograms. Curr Opin Struct Biol 2004;14:325-31. [PMID: 15193312 DOI: 10.1016/j.sbi.2004.04.003] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA