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For: Kawakami H, Su'etsugu M, Katayama T. An isolated Hda-clamp complex is functional in the regulatory inactivation of DnaA and DNA replication. J Struct Biol 2006;156:220-9. [PMID: 16603382 DOI: 10.1016/j.jsb.2006.02.007] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2005] [Revised: 02/20/2006] [Accepted: 02/23/2006] [Indexed: 01/17/2023]
Number Cited by Other Article(s)
1
Rao TVP, Kuzminov A. Robust linear DNA degradation supports replication-initiation-defective mutants in Escherichia coli. G3 (BETHESDA, MD.) 2022;12:jkac228. [PMID: 36165702 PMCID: PMC9635670 DOI: 10.1093/g3journal/jkac228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/13/2022] [Accepted: 08/22/2022] [Indexed: 06/16/2023]
2
Elevated Levels of the Escherichia coli nrdAB-Encoded Ribonucleotide Reductase Counteract the Toxicity Caused by an Increased Abundance of the β Clamp. J Bacteriol 2021;203:e0030421. [PMID: 34543109 DOI: 10.1128/jb.00304-21] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
3
Frandi A, Collier J. HdaB: a novel and conserved DnaA-related protein that targets the RIDA process to stimulate replication initiation. Nucleic Acids Res 2020;48:2412-2423. [PMID: 31875223 PMCID: PMC7049699 DOI: 10.1093/nar/gkz1193] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Revised: 12/03/2019] [Accepted: 12/13/2019] [Indexed: 12/11/2022]  Open
4
Katayama T, Kasho K, Kawakami H. The DnaA Cycle in Escherichia coli: Activation, Function and Inactivation of the Initiator Protein. Front Microbiol 2017;8:2496. [PMID: 29312202 PMCID: PMC5742627 DOI: 10.3389/fmicb.2017.02496] [Citation(s) in RCA: 87] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2017] [Accepted: 11/30/2017] [Indexed: 01/30/2023]  Open
5
Kim JS, Nanfara MT, Chodavarapu S, Jin KS, Babu VMP, Ghazy MA, Chung S, Kaguni JM, Sutton MD, Cho Y. Dynamic assembly of Hda and the sliding clamp in the regulation of replication licensing. Nucleic Acids Res 2017;45:3888-3905. [PMID: 28168278 PMCID: PMC5397184 DOI: 10.1093/nar/gkx081] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2015] [Accepted: 02/03/2017] [Indexed: 11/13/2022]  Open
6
Initiation of DNA Replication. EcoSal Plus 2015;4. [PMID: 26443786 DOI: 10.1128/ecosalplus.4.4.1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
7
Khlebodarova TM, Likhoshvai VA. New evidence of an old problem: The coupling of genome replication to cell growth in bacteria. RUSS J GENET+ 2014. [DOI: 10.1134/s102279541408002x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
8
Likhoshvai VA, Khlebodarova TM. Mathematical modeling of bacterial cell cycle: the problem of coordinating genome replication with cell growth. J Bioinform Comput Biol 2014;12:1450009. [PMID: 24969747 DOI: 10.1142/s0219720014500097] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
9
Robinson A, Causer RJ, Dixon NE. Architecture and conservation of the bacterial DNA replication machinery, an underexploited drug target. Curr Drug Targets 2012;13:352-72. [PMID: 22206257 PMCID: PMC3290774 DOI: 10.2174/138945012799424598] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2011] [Revised: 11/03/2011] [Accepted: 11/05/2011] [Indexed: 11/22/2022]
10
Fingland N, Flåtten I, Downey CD, Fossum-Raunehaug S, Skarstad K, Crooke E. Depletion of acidic phospholipids influences chromosomal replication in Escherichia coli. Microbiologyopen 2012;1:450-66. [PMID: 23233230 PMCID: PMC3535390 DOI: 10.1002/mbo3.46] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Revised: 10/04/2012] [Accepted: 10/11/2012] [Indexed: 11/22/2022]  Open
11
Baxter JC, Sutton MD. Evidence for roles of the Escherichia coli Hda protein beyond regulatory inactivation of DnaA. Mol Microbiol 2012;85:648-68. [PMID: 22716942 DOI: 10.1111/j.1365-2958.2012.08129.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
12
Leonard AC, Grimwade JE. Regulation of DnaA assembly and activity: taking directions from the genome. Annu Rev Microbiol 2012;65:19-35. [PMID: 21639790 DOI: 10.1146/annurev-micro-090110-102934] [Citation(s) in RCA: 95] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
13
Essential biological processes of an emerging pathogen: DNA replication, transcription, and cell division in Acinetobacter spp. Microbiol Mol Biol Rev 2010;74:273-97. [PMID: 20508250 DOI: 10.1128/mmbr.00048-09] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
14
Kawakami H, Katayama T. DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity. Biochem Cell Biol 2010;88:49-62. [PMID: 20130679 DOI: 10.1139/o09-154] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
15
Xu Q, McMullan D, Abdubek P, Astakhova T, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Hale J, Han GW, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Sri Krishna S, Kumar A, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Trame C, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. A structural basis for the regulatory inactivation of DnaA. J Mol Biol 2008;385:368-80. [PMID: 19000695 DOI: 10.1016/j.jmb.2008.10.059] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2008] [Revised: 10/18/2008] [Accepted: 10/22/2008] [Indexed: 11/25/2022]
16
Su'etsugu M, Nakamura K, Keyamura K, Kudo Y, Katayama T. Hda monomerization by ADP binding promotes replicase clamp-mediated DnaA-ATP hydrolysis. J Biol Chem 2008;283:36118-31. [PMID: 18977760 DOI: 10.1074/jbc.m803158200] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
17
Duderstadt KE, Berger JM. AAA+ ATPases in the initiation of DNA replication. Crit Rev Biochem Mol Biol 2008;43:163-87. [PMID: 18568846 DOI: 10.1080/10409230802058296] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
18
Cho E, Ogasawara N, Ishikawa S. The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtils. Genes Genet Syst 2008;83:111-25. [PMID: 18506095 DOI: 10.1266/ggs.83.111] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
19
Nielsen O, Løbner-Olesen A. Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells. EMBO Rep 2008;9:151-6. [PMID: 18246107 DOI: 10.1038/sj.embor.2008.2] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2007] [Accepted: 01/03/2008] [Indexed: 11/09/2022]  Open
20
Roles for the AAA+ motifs of DnaA in the initiation of DNA replication. Biochem Soc Trans 2008;36:78-82. [DOI: 10.1042/bst0360078] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
21
Natrajan G, Hall DR, Thompson AC, Gutsche I, Terradot L. Structural similarity between the DnaA-binding proteins HobA (HP1230) from Helicobacter pylori and DiaA from Escherichia coli. Mol Microbiol 2007;65:995-1005. [PMID: 17683397 DOI: 10.1111/j.1365-2958.2007.05843.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
22
Maul RW, Ponticelli SKS, Duzen JM, Sutton MD. Differential binding of Escherichia coli DNA polymerases to the beta-sliding clamp. Mol Microbiol 2007;65:811-27. [PMID: 17635192 DOI: 10.1111/j.1365-2958.2007.05828.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
23
Abe Y, Jo T, Matsuda Y, Matsunaga C, Katayama T, Ueda T. Structure and function of DnaA N-terminal domains: specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC. J Biol Chem 2007;282:17816-27. [PMID: 17420252 DOI: 10.1074/jbc.m701841200] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
24
Kawakami H, Ozaki S, Suzuki S, Nakamura K, Senriuchi T, Su'etsugu M, Fujimitsu K, Katayama T. The exceptionally tight affinity of DnaA for ATP/ADP requires a unique aspartic acid residue in the AAA+ sensor 1 motif. Mol Microbiol 2006;62:1310-24. [PMID: 17042785 DOI: 10.1111/j.1365-2958.2006.05450.x] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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