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Vidyalakshmi D, Yesudas A, Sivan G, Akhil Prakash E, Priyaja P. Heavy metal accumulation analysis using bivalve, sponge, sea urchin, and gastropod species as bioindicators. MARINE POLLUTION BULLETIN 2024; 202:116374. [PMID: 38663344 DOI: 10.1016/j.marpolbul.2024.116374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 04/09/2024] [Accepted: 04/10/2024] [Indexed: 05/08/2024]
Abstract
A comparative assessment of heavy metal accumulation potential in four distinct marine benthic bioindicators: the bivalve Perna perna, the sponge Callyspongia fibrosa, the sea urchin Tripneustes gratilla, and the gastropod Purpura bufo were conducted. These organisms were collected from the same location, and the concentration of ten heavy metals was analyzed in water, sediment and various body parts of the organisms. The bioaccumulation potential was evaluated using the bio-water accumulation factor and bio-sediment accumulation factor. There was significant variation in the bioaccumulation potential of each organism with respect to different metals. The sponge proved to be a reliable indicator of Cd with a highest concentration of 2.60 μg/g. Sea urchin accumulated high concentrations of Cr (16.98 μg/g) and Pb (4.80 μg/g), whereas Cu was predominant (21.05 μg/g) in gastropod, followed by bivalve (17.67 μg/g). The concentration of metals in hard parts was found to be lower than in the tissues.
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Affiliation(s)
- D Vidyalakshmi
- Department of Marine biology, Microbiology and Biochemistry, Cochin University of Science and Technology, Kerala, India
| | - Aneena Yesudas
- Department of Marine biology, Microbiology and Biochemistry, Cochin University of Science and Technology, Kerala, India
| | - Gopika Sivan
- Department of Marine biology, Microbiology and Biochemistry, Cochin University of Science and Technology, Kerala, India
| | - E Akhil Prakash
- Department of Marine biology, Microbiology and Biochemistry, Cochin University of Science and Technology, Kerala, India
| | - P Priyaja
- Department of Marine biology, Microbiology and Biochemistry, Cochin University of Science and Technology, Kerala, India.
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Alvares K, DeHart CJ, Thomas PM, Kelleher NL, Veis A. The unique biomineralization transcriptome and proteome of Lytechinus variegatus teeth. Connect Tissue Res 2018; 59:20-29. [PMID: 29745816 PMCID: PMC6052879 DOI: 10.1080/03008207.2017.1408605] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
BACKGROUND Matrix-regulated biomineralization involves the specific nucleation and growth of mineral phases within or upon preformed structured organic matrices. We hypothesized that there might be a general mechanism whereby anionic, phosphorylated mineral ion-binding proteins assist in specifically locating the mineral ions with respect to the mineralizing structural organic matrix. Here we extended these studies to invertebrate mineralization in Lytechinus variegatus (Lv) teeth. MATERIALS AND METHODS The tooth proteins were extracted and the phosphoproteins occluded in the mineral were enriched by passage through a ProQ Diamond phosphoprotein enrichment column, and subjected to MS/MS analysis. A Lv RNA-seq derived transcriptome database was generated. The MS/MS data found 25 proteins previously classified as "Predicted uncharacterized proteins" and many of the spicule matrix proteins. As these 25 proteins were also identified with the transcriptome analysis, and were thus no longer "hypothetical" but real proteins in the Lv tooth. Each protein was analyzed for the presence of a signal peptide, an acidic pI≤4, and the ability to be phosphorylated. RESULTS Four new Lv tooth specific Pro-Ala-rich proteins were found, representing a new class of proteins. CONCLUSION The tooth is different from the spicules and other urchin skeletal elements in that only the tooth contains both "high" and "very high" magnesium calcite, [Ca(1-X) Mg(X) CO3], where X is the mole fraction of Mg. We speculate that our newly discovered proline-alanine rich proteins, also containing sequences of acidic amino acids, may be involved in the formation of high magnesium and very high magnesium calcite.
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Affiliation(s)
- Keith Alvares
- Feinberg School of Medicine, Department of Cell and Molecular Biology, Northwestern University, Chicago, IL, USA
| | - Caroline J DeHart
- Proteomics Center of Excellence, Northwestern University, Evanston, IL, USA
| | - Paul M Thomas
- Proteomics Center of Excellence, Northwestern University, Evanston, IL, USA
| | - Neil L Kelleher
- Proteomics Center of Excellence, Northwestern University, Evanston, IL, USA
| | - Arthur Veis
- Feinberg School of Medicine, Department of Cell and Molecular Biology, Northwestern University, Chicago, IL, USA,Feinberg School of Medicine, Department of Cell, Molecular and Structural Biology, Northwestern University, Chicago, IL, USA
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Stock S, Seto J, Deymier A, Rack A, Veis A. Growth of second stage mineral in Lytechinus variegatus. Connect Tissue Res 2018; 59:345-355. [PMID: 29083939 PMCID: PMC6252257 DOI: 10.1080/03008207.2017.1391233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
UNLABELLED Purpose and Aims: Sea urchin teeth consist of calcite and form in two stages with different magnesium contents. The first stage structures of independently formed plates and needle-prisms define the shape of the tooth, and the columns of the second stage mineral cements the first stage structures together and control the fracture behavior of the mature tooth. This study investigates the nucleation and growth of the second stage mineral. MATERIALS AND METHODS Scanning electron microscopy (SEM) and synchrotron microComputed Tomography characterized the structures of the second phase material found in developing of Lytechinus variegatus teeth. RESULTS Although the column development is a continuous process, defining four phases of column formation captures the changes that occur in teeth of L. variegatus. The earliest phase consists of small 1-2 µm diameter hemispheres, and the second of 5-10 µm diameter, mound-like structures with a nodular surface, develops from the hemispheres. The mounds eventually bridge the syncytium between adjacent plates and form hyperboloid structures (phase three) that appear like mesas when plates separate during the fracture. The mesa diameter increases with time until the column diameter is significantly larger than its height, defining the fourth phase of column development. Energy dispersive x-ray spectroscopy confirms that the columns contain more magnesium than the underlying plates; the ratios of magnesium to calcium are consistent with compositions derived from x-ray diffraction. CONCLUSION Columns grow from both bounding plates. The presence of first phase columns interspersed among third stage mesas indicates very localized control of mineralization.
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Affiliation(s)
- S.R. Stock
- Dept. of Cell and Molecular Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA,Corresponding author: Mail address: as above 303 E. Chicago Ave., 60611-3008,
| | - Jong Seto
- Dept. of Biomaterials, Max Planck Inst. for Colloids and Interfaces, Potsdam, Germany,presently at: Dept. of Bioengineering and Therapeutic Sciences, University of California – San Francisco, San Francisco, CA, USA
| | - A.C. Deymier
- Dept. of Cell and Molecular Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA,presently at: Dept. of Orthopaedic Surgery, Columbia University, New York, NY, USA
| | - A. Rack
- European Synchrotron Radiation Facility, Grenoble, France
| | - A. Veis
- Dept. of Cell and Molecular Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA
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Zhu X, Wang S, Yan X, Li Q, Wang X. Multiple deformation mechanisms in the stone of a sea urchin tooth. CrystEngComm 2016. [DOI: 10.1039/c6ce00984k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Large area sub-micron chemical imaging of magnesium in sea urchin teeth. J Struct Biol 2015; 189:269-75. [DOI: 10.1016/j.jsb.2014.12.005] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2014] [Revised: 12/22/2014] [Accepted: 12/23/2014] [Indexed: 11/23/2022]
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Stock SR, Ignatiev K, Lee PL, Almer JD. Calcite orientations and composition ranges within teeth across Echinoidea. Connect Tissue Res 2014; 55 Suppl 1:48-52. [PMID: 25158180 PMCID: PMC4759641 DOI: 10.3109/03008207.2014.923865] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Sea urchin's teeth from four families of order Echinoida and from orders Temnopleuroida, Arbacioida and Cidaroida were studied with synchrotron X-ray diffraction. The high and very high Mg calcite phases of the teeth, i.e. the first and second stage mineral constituents, respectively, have the same crystallographic orientations. The co-orientation of first and second stage mineral, which the authors attribute to epitaxy, extends across the phylogenic width of the extant regular sea urchins and demonstrates that this is a primitive character of this group. The range of compositions Δx for the two phases of Ca1-xMgxCO3 is about 0.20 or greater and is consistent with a common biomineralization process.
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Affiliation(s)
- Stuart R. Stock
- Department of Molecular Pharmacology and Biological Chemistry, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA
| | - Konstantin Ignatiev
- Department of Molecular Pharmacology and Biological Chemistry, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA
| | - Peter L. Lee
- The Advanced Photon Source, Argonne National Laboratory, Argonne, IL, USA
| | - Jonathan D. Almer
- The Advanced Photon Source, Argonne National Laboratory, Argonne, IL, USA
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Stock SR. Sea urchins have teeth? A review of their microstructure, biomineralization, development and mechanical properties. Connect Tissue Res 2014; 55:41-51. [PMID: 24437604 PMCID: PMC4727832 DOI: 10.3109/03008207.2013.867338] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Sea urchins possess a set of five teeth which are self-sharpening and which continuously replace material lost through abrasion. The continuous replacement dictates that each tooth consists of the range of developmental states from discrete plates in the plumula, the least mineralized and least mature portion, to plates and needle-prisms separated by cellular syncytia at the beginning of the tooth shaft to a highly dense structure at the incisal end. The microstructures and their development are reviewed prior to a discussion of current understanding of the biomineralization processes operating during tooth formation. For example, the mature portions of each tooth consist of single crystal calcite but the early stages of mineral formation (e.g. solid amorphous calcium carbonate, ions in solution) continue to be investigated. The second stage mineral that cements the disparate plates and prisms together has a much higher Mg content than the first stage prisms and needles and allows the tooth to be self-sharpening. Mechanically, the urchin tooth's calcite performs better than inorganic calcite, and aspects of tooth functionality that are reviewed include the materials properties themselves and the role of the orientations of the plates and prisms relative to the axes of the applied loads. Although the properties and microarchitecture of sea urchin teeth or other mineralized tissues are often described as optimized, this view is inaccurate because these superb solutions to the problem of constructing functional structures are intermediaries not endpoints of evolution.
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Affiliation(s)
- Stuart R Stock
- Department of Molecular Pharmacology and Biological Chemistry, Feinberg School of Medicine, Northwestern University , Chicago, IL , USA
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Long X, Ma Y, Qi L. Biogenic and synthetic high magnesium calcite - a review. J Struct Biol 2013; 185:1-14. [PMID: 24291472 DOI: 10.1016/j.jsb.2013.11.004] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2013] [Revised: 09/23/2013] [Accepted: 11/05/2013] [Indexed: 10/26/2022]
Abstract
Systematic studies on the Mg distributions, the crystal orientations, the formation mechanisms and the mechanical properties of biogenic high-Mg calcites in different marine organisms were summarized in detail in this review. The high-Mg calcites in the hard tissues of marine organisms mentioned generally own a few common features as follows. Firstly, the Mg distribution is not uniform in most of the minerals. Secondly, high-Mg calcite biominerals are usually composed of nanoparticles that own almost the same crystallographic orientations and thus they behave like single crystals or mesocrystals. Thirdly, the formation of thermodynamically unstable high-Mg calcites in marine organisms under mild conditions is affected by three key factors, that is, the formation of amorphous calcium (magnesium) carbonate precursor, the control of polymorph via biomolecules and the high Mg/Ca ratios in modern sea. Lastly, the existence of Mg ions in the Mg-containing calcite may improve the mechanical properties of biogenic minerals. Furthermore, the key progress in the synthesis of high-Mg calcites in the laboratory based on the formation mechanisms of the biogenic high-Mg calcites was reviewed. Many researchers have realized the synthesis of high-Mg calcites in the laboratory under ambient conditions with the help of intermediate amorphous phase, mixed solvents, organic/inorganic surfaces and soluble additives. Studies on the structural analysis and formation mechanisms of thermodynamically unstable biogenic high-Mg calcite minerals may shed light on the preparation of functional materials with enhanced mechanical properties.
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Affiliation(s)
- Xia Long
- Beijing National laboratory for Molecular Sciences (BNLMS), State Key Laboratory for Structural Chemistry of Unstable and Stable Species, College of Chemistry, Peking University, Beijing 100871, PR China
| | - Yurong Ma
- Beijing National laboratory for Molecular Sciences (BNLMS), State Key Laboratory for Structural Chemistry of Unstable and Stable Species, College of Chemistry, Peking University, Beijing 100871, PR China.
| | - Limin Qi
- Beijing National laboratory for Molecular Sciences (BNLMS), State Key Laboratory for Structural Chemistry of Unstable and Stable Species, College of Chemistry, Peking University, Beijing 100871, PR China
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de Araújo Farias V, López-Peñalver JJ, Sirés-Campos J, López-Ramón MV, Moreno-Castilla C, Oliver FJ, Ruiz de Almodóvar JM. Growth and spontaneous differentiation of umbilical-cord stromal stem cells on activated carbon cloth. J Mater Chem B 2013; 1:3359-3368. [PMID: 32260926 DOI: 10.1039/c3tb20305k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
We have investigated the capacity of activated carbon cloth to support the growth and differentiation of human mesenchymal umbilical-cord stromal stem cells. Our results demonstrate that this scaffold provides suitable conditions for the development of cell-derived matrix proteins and facilitates the growth of undifferentiated stem cells with the ability to induce osteogenic and chondrogenic differentiation. Immunoflourescence staining revealed extensive expression of collagen in all the samples, and collagen type II and osteopontin within the samples cultivated in specific differentiation-inducing media. Cell growth and the formation of natural collagen, calcium-magnesium carbonate and hydroxyapatite crystals, together with the self-assemblage of collagen to produce suprafibrillar arrangements of fibrils all occur simultaneously and can be studied together ex vivo under physiological conditions. Furthermore, the spontaneous differentiation of stem cells cultured on activated carbon cloth with no osteogenic supplements opens up new possibilities for bone-tumour engineering and treatment of traumatic and degenerative bone diseases.
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Affiliation(s)
- Virgínea de Araújo Farias
- Instituto de Biopatología y Medicina Regenerativa, Centro de Investigación Biomédica, Universidad de Granada, Avda. del Conocimiento 2, 18016, Granada, Spain.
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Ma Y, Feng Q, Bourrat X. A novel growth process of calcium carbonate crystals in silk fibroin hydrogel system. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2013; 33:2413-20. [DOI: 10.1016/j.msec.2013.02.006] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2012] [Revised: 01/10/2013] [Accepted: 02/04/2013] [Indexed: 10/27/2022]
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