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Ziegler J, Erpenbeck MP, Fuchs T, Saibold A, Volkmer PC, Schmidt G, Eicher J, Pallaoro P, De Souza Falguera R, Aubele F, Hagedorn M, Vansovich E, Raffler J, Ringshandl S, Kerscher A, Maurer JK, Kühnel B, Schenkirsch G, Kampf M, Kapsner LA, Ghanbarian H, Spengler H, Soto-Rey I, Albashiti F, Hellwig D, Ertl M, Fette G, Kraska D, Boeker M, Prokosch HU, Gulden C. Bridging Data Silos in Oncology with Modular Software for Federated Analysis on Fast Healthcare Interoperability Resources: Multisite Implementation Study. J Med Internet Res 2025; 27:e65681. [PMID: 40233352 PMCID: PMC12041822 DOI: 10.2196/65681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2024] [Revised: 11/24/2024] [Accepted: 12/18/2024] [Indexed: 04/17/2025] Open
Abstract
BACKGROUND Real-world data (RWD) from sources like administrative claims, electronic health records, and cancer registries offer insights into patient populations beyond the tightly regulated environment of randomized controlled trials. To leverage this and to advance cancer research, 6 university hospitals in Bavaria have established a joint research IT infrastructure. OBJECTIVE This study aimed to outline the design, implementation, and deployment of a modular data transformation pipeline that transforms oncological RWD into a Health Level 7 (HL7) Fast Healthcare Interoperability Resources (FHIR) format and then into a tabular format in preparation for a federated analysis (FA) across the 6 Bavarian Cancer Research Center university hospitals. METHODS To harness RWD effectively, we designed a pipeline to convert the oncological basic dataset (oBDS) into HL7 FHIR format and prepare it for FA. The pipeline handles diverse IT infrastructures and systems while maintaining privacy by keeping data decentralized for analysis. To assess the functionality and validity of our implementation, we defined a cohort to address two specific medical research questions. We evaluated our findings by comparing the results of the FA with reports from the Bavarian Cancer Registry and the original data from local tumor documentation systems. RESULTS We conducted an FA of 17,885 cancer cases from 2021/2022. Breast cancer was the most common diagnosis at 3 sites, prostate cancer ranked in the top 2 at 4 sites, and malignant melanoma was notably prevalent. Gender-specific trends showed larynx and esophagus cancers were more common in males, while breast and thyroid cancers were more frequent in females. Discrepancies between the Bavarian Cancer Registry and our data, such as higher rates of malignant melanoma (3400/63,771, 5.3% vs 1921/17,885, 10.7%) and lower representation of colorectal cancers (8100/63,771, 12.7% vs 1187/17,885, 6.6%) likely result from differences in the time periods analyzed (2019 vs 2021/2022) and the scope of data sources used. The Bavarian Cancer Registry reports approximately 3 times more cancer cases than the 6 university hospitals alone. CONCLUSIONS The modular pipeline successfully transformed oncological RWD across 6 hospitals, and the federated approach preserved privacy while enabling comprehensive analysis. Future work will add support for recent oBDS versions, automate data quality checks, and integrate additional clinical data. Our findings highlight the potential of federated health data networks and lay the groundwork for future research that can leverage high-quality RWD, aiming to contribute valuable knowledge to the field of cancer research.
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Affiliation(s)
- Jasmin Ziegler
- Medical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Medical Informatics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Marcel Pascal Erpenbeck
- Medical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany
| | - Timo Fuchs
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Department of Nuclear Medicine, University Hospital Regensburg, Regensburg, Germany
- Medical Data Integration Center, University Hospital Regensburg, Regensburg, Germany
| | - Anna Saibold
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Department of Information Technology, University Hospital Regensburg, Regensburg, Germany
| | - Paul-Christian Volkmer
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Comprehensive Cancer Center Mainfranken, University Hospital Würzburg, Würzburg, Germany
| | - Guenter Schmidt
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Data Integration Center, University Hospital Würzburg, Würzburg, Germany
| | - Johanna Eicher
- Institute for Artificial Intelligence and Informatics in Medicine, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany
- Data Integration Center, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany
| | - Peter Pallaoro
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Institute for Artificial Intelligence and Informatics in Medicine, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany
- Data Integration Center, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany
| | - Renata De Souza Falguera
- Institute for Artificial Intelligence and Informatics in Medicine, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany
- Section of Precision Psychiatry, Clinic for Psychiatry and Psychotherapy, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Fabio Aubele
- Medical Data Integration Center, LMU University Hospital, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Marlien Hagedorn
- Medical Data Integration Center, LMU University Hospital, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Ekaterina Vansovich
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Digital Medicine, University Hospital of Augsburg, Augsburg, Germany
| | - Johannes Raffler
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Digital Medicine, University Hospital of Augsburg, Augsburg, Germany
| | - Stephan Ringshandl
- Department of Medicine, Data Integration Center, Philipps-University Marburg, Marburg, Germany
| | - Alexander Kerscher
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Medical Informatics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
- Comprehensive Cancer Center Mainfranken, University Hospital Würzburg, Würzburg, Germany
| | - Julia Karolin Maurer
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- University Cancer Center Regensburg, University Hospital Regensburg, Regensburg, Germany
| | - Brigitte Kühnel
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Comprehensive Cancer Center Munich, Klinikum rechts der Isar, Technical University of Munich, Munich, Germany
| | - Gerhard Schenkirsch
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Comprehensive Cancer Center Augsburg, University Hospital of Augsburg, Augsburg, Germany
| | - Marvin Kampf
- Medical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany
| | - Lorenz A Kapsner
- Medical Informatics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
- Institute of Radiology, Uniklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Hadieh Ghanbarian
- Medical Informatics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Helmut Spengler
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Data Integration Center, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany
| | - Iñaki Soto-Rey
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Digital Medicine, University Hospital of Augsburg, Augsburg, Germany
| | - Fady Albashiti
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Medical Data Integration Center, LMU University Hospital, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Dirk Hellwig
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Department of Nuclear Medicine, University Hospital Regensburg, Regensburg, Germany
- Medical Data Integration Center, University Hospital Regensburg, Regensburg, Germany
| | - Maximilian Ertl
- Data Integration Center, University Hospital Würzburg, Würzburg, Germany
| | - Georg Fette
- Data Integration Center, University Hospital Würzburg, Würzburg, Germany
| | - Detlef Kraska
- Medical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany
| | - Martin Boeker
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Institute for Artificial Intelligence and Informatics in Medicine, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany
| | - Hans-Ulrich Prokosch
- Medical Center for Information and Communication Technology, Universitätsklinikum Erlangen, Erlangen, Germany
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Medical Informatics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Christian Gulden
- Bavarian Cancer Research Center (BZKF), Erlangen, Germany
- Medical Informatics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
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van Baalen V, Didden EM, Rosenberg D, Bardenheuer K, van Speybroeck M, Brand M. Increase transparency and reproducibility of real-world evidence in rare diseases through disease-specific Federated Data Networks. Pharmacoepidemiol Drug Saf 2024; 33:e5778. [PMID: 38556812 DOI: 10.1002/pds.5778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 03/03/2024] [Accepted: 03/04/2024] [Indexed: 04/02/2024]
Abstract
PURPOSE In rare diseases, real-world evidence (RWE) generation is often restricted due to small patient numbers and global geographic distribution. A federated data network (FDN) approach brings together multiple data sources harmonized for collaboration to increase the power of observational research. In this paper, we review how to increase reproducibility and transparency of RWE studies in rare diseases through disease-specific FDNs. METHOD To be successful, a multiple stakeholder scientific FDN collaboration requires a strong governance model in place. In such a model, each database owner remains in full control regarding the use of and access to patient-level data and is responsible for data privacy, ethical, and legal compliance. Provided that all this is well documented and good database descriptions are in place, such a governance model results in increased transparency, while reproducibility is achieved through data curation and harmonization, and distributed analytical methods. RESULTS Leveraging the OHDSI community set of methods and tools, two rare disease-specific FDNs are discussed in more detail. For multiple myeloma, HONEUR-the Haematology Outcomes Network in Europe-has built a strong community among the data partners dedicated to scientific exchange and research. To advance scientific knowledge in pulmonary hypertension (PH) an FDN, called PHederation, was established to form a partnership of research institutions with PH databases coming from diverse origins.
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Affiliation(s)
- Valerie van Baalen
- Global Epidemiology, Office of the Chief Medical Officer, Johnson & Johnson, Basel, Switzerland
| | - Eva-Maria Didden
- Global Epidemiology, Office of the Chief Medical Officer, Johnson & Johnson, Basel, Switzerland
| | - Daniel Rosenberg
- Global Epidemiology, Office of the Chief Medical Officer, Johnson & Johnson, Basel, Switzerland
| | - Kristina Bardenheuer
- Health Economics, Market Access and Reimbursement, EMEA Real-World Evidence and Value-based Health Care, Johnson & Johnson, Neuss, Germany
| | | | - Monika Brand
- Global Epidemiology, Office of the Chief Medical Officer, Johnson & Johnson, Basel, Switzerland
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