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Guajardo-Leiva S, Díez B, Rojas-Fuentes C, Chnaiderman J, Castro-Nallar E, Catril V, Ampuero M, Gaggero A. From sewage to genomes: Expanding our understanding of the urban and semi-urban wastewater RNA virome. ENVIRONMENTAL RESEARCH 2025; 276:121509. [PMID: 40185271 DOI: 10.1016/j.envres.2025.121509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2024] [Revised: 03/28/2025] [Accepted: 03/29/2025] [Indexed: 04/07/2025]
Abstract
Wastewater is a hotspot for viral diversity, harboring various microbial, plant, and animal viruses, including those that infect humans. However, the dynamics, resilience, and ecological roles of viral communities during treatment are largely unknown. In this study, we explored RNA virus ecogenomics using metagenomics from influent and effluent samples across three wastewater catchment areas in Chile, with a population of 7.05 million equivalent inhabitants. We identified 14,212 RNA-dependent RNA polymerase (RdRP)-coding sequences from the Orthornavirae kingdom, clustering into 4989 viral species. Using extensive databases of 14,150 family-level representative sequences, we classified 90 % of our sequences at the family level. Our analysis revealed that treatment reduced viral richness and evenness (Shannon index), but phylogenetic diversity remained unchanged. Effluents showed lower richness and evenness than influents with similar phylogenetic diversity. Species turnover, influenced by catchment area and treatment, accounted for 54 % of sample dissimilarities (Weighted Unifrac). Biomarker analysis indicated that families like Astroviridae and Fiersviridae were more abundant in influents, while Reoviridae and Virgaviridae dominated effluents. This suggests that viral resistance to treatment varies and cannot be solely attributed to genome type, size, or morphology. We traced viral genomes through time and space, identifying sequences like the Pepper Mild Mottle Virus (PMMoV) from the Virgaviridae family over large distances and periods, highlighting its wastewater marker potential. High concentrations of human pathogens, such as Rotavirus (Reoviridae) and Human Astrovirus (Astroviridae), were found in both influents and effluents, stressing the need for continuous monitoring, especially for treated wastewater reuse.
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Affiliation(s)
- Sergio Guajardo-Leiva
- Dirección de Investigación, Vicerrectoría Académica, Universidad de Talca, Talca, Chile; Centro de Ecología Integrativa, Universidad de Talca, Talca, Chile; Facultad de Ciencias Agrarias, Universidad de Talca, Talca, Chile.
| | - Beatriz Díez
- GEMA Center for Genomics, Ecology & Environment, Universidad Mayor, Santiago, Chile; Center for Climate and Resilience Research (CR)2, Chile; Millennium Institute Center for Genome Regulation (CGR), Chile
| | - Cecilia Rojas-Fuentes
- Programa de Virología, ICBM, Facultad de Medicina, Universidad de Chile, Chile; Millennium Institute on Immunology and Immunotherapy, Santiago, Chile
| | - Jonás Chnaiderman
- Programa de Virología, ICBM, Facultad de Medicina, Universidad de Chile, Chile
| | - Eduardo Castro-Nallar
- Centro de Ecología Integrativa, Universidad de Talca, Talca, Chile; Departamento de Microbiología, Facultad de Ciencias de la Salud, Universidad de Talca, Talca, Chile
| | - Valentina Catril
- Programa de Virología, ICBM, Facultad de Medicina, Universidad de Chile, Chile
| | - Manuel Ampuero
- Programa de Virología, ICBM, Facultad de Medicina, Universidad de Chile, Chile
| | - Aldo Gaggero
- Programa de Virología, ICBM, Facultad de Medicina, Universidad de Chile, Chile.
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2
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Bleotu C, Matei L, Dragu LD, Necula LG, Pitica IM, Chivu-Economescu M, Diaconu CC. Viruses in Wastewater-A Concern for Public Health and the Environment. Microorganisms 2024; 12:1430. [PMID: 39065197 PMCID: PMC11278728 DOI: 10.3390/microorganisms12071430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Revised: 07/07/2024] [Accepted: 07/11/2024] [Indexed: 07/26/2024] Open
Abstract
Wastewater monitoring provides essential information about water quality and the degree of contamination. Monitoring these waters helps identify and manage risks to public health, prevent the spread of disease, and protect the environment. Standardizing the appropriate and most accurate methods for the isolation and identification of viruses in wastewater is necessary. This review aims to present the major classes of viruses in wastewater, as well as the methods of concentration, isolation, and identification of viruses in wastewater to assess public health risks and implement corrective measures to prevent and control viral infections. Last but not least, we propose to evaluate the current strategies in wastewater treatment as well as new alternative methods of water disinfection.
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Affiliation(s)
- Coralia Bleotu
- Stefan S. Nicolau Institute of Virology, Romanian Academy, 030304 Bucharest, Romania; (C.B.); (L.M.); (L.D.D.); (L.G.N.); (I.M.P.); (C.C.D.)
- Research Institute of the University of Bucharest (ICUB), University of Bucharest, 060023 Bucharest, Romania
- The Academy of Romanian Scientist, 050711 Bucharest, Romania
| | - Lilia Matei
- Stefan S. Nicolau Institute of Virology, Romanian Academy, 030304 Bucharest, Romania; (C.B.); (L.M.); (L.D.D.); (L.G.N.); (I.M.P.); (C.C.D.)
| | - Laura Denisa Dragu
- Stefan S. Nicolau Institute of Virology, Romanian Academy, 030304 Bucharest, Romania; (C.B.); (L.M.); (L.D.D.); (L.G.N.); (I.M.P.); (C.C.D.)
| | - Laura Georgiana Necula
- Stefan S. Nicolau Institute of Virology, Romanian Academy, 030304 Bucharest, Romania; (C.B.); (L.M.); (L.D.D.); (L.G.N.); (I.M.P.); (C.C.D.)
| | - Ioana Madalina Pitica
- Stefan S. Nicolau Institute of Virology, Romanian Academy, 030304 Bucharest, Romania; (C.B.); (L.M.); (L.D.D.); (L.G.N.); (I.M.P.); (C.C.D.)
| | - Mihaela Chivu-Economescu
- Stefan S. Nicolau Institute of Virology, Romanian Academy, 030304 Bucharest, Romania; (C.B.); (L.M.); (L.D.D.); (L.G.N.); (I.M.P.); (C.C.D.)
| | - Carmen Cristina Diaconu
- Stefan S. Nicolau Institute of Virology, Romanian Academy, 030304 Bucharest, Romania; (C.B.); (L.M.); (L.D.D.); (L.G.N.); (I.M.P.); (C.C.D.)
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Li Z, Yang D, Li S, Yang L, Yan W, Xu H. Advances on electrochemical disinfection research: Mechanisms, influencing factors and applications. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169043. [PMID: 38070567 DOI: 10.1016/j.scitotenv.2023.169043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 11/26/2023] [Accepted: 11/30/2023] [Indexed: 12/18/2023]
Abstract
Disinfection, a vital barrier against pathogenic microorganisms, is crucial in halting the spread of waterborne diseases. Electrochemical methods have been extensively researched and implemented for the inactivation of pathogenic microorganisms from water and wastewater, primarily owing to their simplicity, efficiency, and eco-friendliness. This review succinctly outlined the core mechanisms of electrochemical disinfection (ED) and systematically examined the factors influencing its efficacy, including anode materials, system conditions, and target species. Additionally, the practical application of ED in water and wastewater treatment was comprehensively reviewed. Case studies involving various scenarios such as drinking water, hospital wastewater, black water, rainwater, and ballast water provided concrete instances of the expansive utility of ED. Finally, coupling ED with other technologies and the resulting synergies were introduced as pivotal foundations for subsequent engineering advancements.
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Affiliation(s)
- Zhen Li
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, Shaanxi, China
| | - Duowen Yang
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, Shaanxi, China
| | - Shanshan Li
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, Shaanxi, China
| | - Liu Yang
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, Shaanxi, China
| | - Wei Yan
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, Shaanxi, China; Research Institute of Xi'an Jiaotong University, Zhejiang, Hangzhou 311200, China
| | - Hao Xu
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, Shaanxi, China; Research Institute of Xi'an Jiaotong University, Zhejiang, Hangzhou 311200, China.
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Mališová E, Guštafík A, Tamáš M, Strečanský T, Imreová Z, Konečná B, Červenková A, Peciar P, Mackuľak T, Híveš J. Effective stabilization of electrochemically prepared ecological oxidizing agent-ferrate(VI)-by encapsulation in zeolite and its application to water containing SARS-CoV-2 virus. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2023; 95:e10940. [PMID: 37815302 DOI: 10.1002/wer.10940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 08/21/2023] [Accepted: 10/05/2023] [Indexed: 10/11/2023]
Abstract
Improper and insufficient treatment of infectious hospital wastewater could seriously endanger public health and the environment. Ferrate(VI), a strong oxidizing, disinfecting, and coagulating agent, has the potential as a green solution for decontamination of water and wastewater. In this paper, electrochemically prepared potassium ferrate (K2 FeO4 ) with high purity was successfully encapsulated and applied to the water contaminated by SARS-CoV-2. Natural zeolite was chosen as an appropriate ecological material for ferrate encapsulation. The stability of encapsulated ferrate (in tablet form) was monitored for an extended time period (290 days) and has significantly increased in contrast with free potassium ferrate by almost 30%. Subsequently, the K2 FeO4 encapsulated with zeolite in tablet form was applied to the water and municipal water samples containing the SARS-CoV-2 virus. The removal efficiency reached up to 98.5% and 86.7%, respectively, under natural conditions. Combination of environmentally friendly oxidizing agent and natural excellent adsorbent leads to the creation of very effective water treatment matter. These findings are essentially immediate and especially important for immediate water treatment in urgent situations such as natural disasters or military conflict. PRACTITIONER POINTS: Electrochemical preparation of oxidizing agent, K2 FeO4 , in high purity by own constructed electrolyzer. Encapsulation of ferrate(VI) to natural zeolite threefold improving the stability during 9 months. SARS-CoV-2 virus was successfully removed from various contaminated types of water. High degradation efficiency of virus fragments by Fe(VI) was achieved without additional water adjustment, in natural pH range.
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Affiliation(s)
- Emília Mališová
- Department of Inorganic Technology, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Bratislava, Slovak Republic
| | - Adam Guštafík
- Institute of Process Engineering, Faculty of Mechanical Engineering, Slovak University of Technology in Bratislava, Bratislava, Slovak Republic
| | - Michal Tamáš
- Department of Environmental Engineering, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Bratislava, Slovak Republic
- Institute of Physiology, Faculty of Medicine, Comenius University, Bratislava, Slovak Republic
| | - Tomáš Strečanský
- Department of Environmental Engineering, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Bratislava, Slovak Republic
| | - Zuzana Imreová
- Department of Environmental Engineering, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Bratislava, Slovak Republic
| | - Barbora Konečná
- Institute of Molecular Biomedicine, Faculty of Medicine, Comenius University, Bratislava, Slovak Republic
| | - Andrea Červenková
- Department of Inorganic Technology, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Bratislava, Slovak Republic
| | - Peter Peciar
- Institute of Process Engineering, Faculty of Mechanical Engineering, Slovak University of Technology in Bratislava, Bratislava, Slovak Republic
| | - Tomáš Mackuľak
- Department of Environmental Engineering, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Bratislava, Slovak Republic
| | - Ján Híveš
- Department of Inorganic Technology, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Bratislava, Slovak Republic
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Pramanik R, Bodawar N, Brahme A, Kamble S, Dharne M. Comparative evaluation of advanced oxidation processes (AOPs) for reducing SARS-CoV-2 viral load from campus sewage water. JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING 2023; 11:109673. [PMID: 36937242 PMCID: PMC10008039 DOI: 10.1016/j.jece.2023.109673] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 03/06/2023] [Accepted: 03/10/2023] [Indexed: 06/08/2023]
Abstract
Presence of SARS-CoV-2 in wastewater is a major concern as the wastewater meets rivers and other water bodies and is used by the population for various purposes. Hence it is very important to treat sewage water in an efficient manner in order to reduce the public health risk. In the present work, various advanced oxidation processes (AOPs) have been evaluated for disinfection of SARS-CoV-2 from sewage water collected from STP inlet of academic institutional residential. The sewage water was subjected to ten AOPs, which include Ozone (O3), Hydrodynamic cavitation (HC), Ultraviolet radiation (UV), and their hybrid combinations like HC/O3, HC/O3/H2O2, HC/H2O2, O3/UV, UV/H2O2, UV/H2O2/O3, and O3/H2O2 to reduce SARS-CoV-2 viral load. Further, AOP treated sewage water was subjected to total nucleic acid isolation followed by RT-qPCR for viral load estimation. The sewage water treatment techniques were evaluated based on their viral concentration-reducing efficiency. It was found that ozone and ozone-coupled hybrid AOPs showed the most promising result with more than 98 % SARS-CoV-2 viral load reducing efficiency from sewage water. Interestingly, the best six AOPs used in this study significantly reduced both the SARS-CoV-2 and PMMoV (faecal indicator) viral load and improved water quality in terms of increasing DO and decreasing TOC.
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Affiliation(s)
- Rinka Pramanik
- National Collection of Industrial Microorganisms (NCIM), Biochemical Sciences Division, CSIR, National Chemical Laboratory (NCL), Pune 411008, India
| | - Narendra Bodawar
- Chemical Engineering and Process Development (CEPD) Division, CSIR, National Chemical Laboratory (NCL), Pune 411008, India
| | - Aashay Brahme
- Chemical Engineering and Process Development (CEPD) Division, CSIR, National Chemical Laboratory (NCL), Pune 411008, India
| | - Sanjay Kamble
- Chemical Engineering and Process Development (CEPD) Division, CSIR, National Chemical Laboratory (NCL), Pune 411008, India
| | - Mahesh Dharne
- National Collection of Industrial Microorganisms (NCIM), Biochemical Sciences Division, CSIR, National Chemical Laboratory (NCL), Pune 411008, India
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6
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Azuma T, Katagiri M, Sasaki N, Kuroda M, Watanabe M. Performance of a Pilot-Scale Continuous Flow Ozone-Based Hospital Wastewater Treatment System. Antibiotics (Basel) 2023; 12:antibiotics12050932. [PMID: 37237835 DOI: 10.3390/antibiotics12050932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 05/16/2023] [Accepted: 05/17/2023] [Indexed: 05/28/2023] Open
Abstract
Antimicrobial resistance (AMR) is becoming a global concern. Recently, research has emerged to evaluate the human and environmental health implications of wastewater from medical facilities and to identify acceptable wastewater treatment methods. In this study, a disinfection wastewater treatment system using an ozone-based continuous flow system was installed in a general hospital located in Japan. The effectiveness of antimicrobial-resistant bacteria (ARB) and antimicrobials in mitigating the environmental impact of hospital wastewater was evaluated. Metagenomic analysis was conducted to characterize the microorganisms in the wastewater before and after treatment. The results demonstrated that ozone treatment enables effective inactivation of general gut bacteria, including Bacteroides, Prevotella, Escherichia coli, Klebsiella, DNA molecules, and ARGs, as well as antimicrobials. Azithromycin and doxycycline removal rates were >99% immediately after treatment, and levofloxacin and vancomycin removal rates remained between 90% and 97% for approximately one month. Clarithromycin was more readily removed than the other antimicrobials (81-91%), and no clear removal trend was observed for ampicillin. Our findings provide a better understanding of the environmental management of hospital wastewater and enhance the effectiveness of disinfection wastewater treatment systems at medical facilities for mitigating the discharge of pollutants into aquatic environments.
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Affiliation(s)
- Takashi Azuma
- Department of Pharmaceutical Sciences, Osaka Medical and Pharmaceutical University, Takatsuki 569-1094, Japan
| | - Miwa Katagiri
- Department of Surgery, Toho University Ohashi Medical Center, Tokyo 153-8515, Japan
| | - Naobumi Sasaki
- Pathogen Genomics Center, National Institute of Infectious Diseases, Tokyo 162-8640, Japan
| | - Makoto Kuroda
- Pathogen Genomics Center, National Institute of Infectious Diseases, Tokyo 162-8640, Japan
| | - Manabu Watanabe
- Department of Surgery, Toho University Ohashi Medical Center, Tokyo 153-8515, Japan
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7
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Zupanc M, Zevnik J, Filipić A, Gutierrez-Aguirre I, Ješelnik M, Košir T, Ortar J, Dular M, Petkovšek M. Inactivation of the enveloped virus phi6 with hydrodynamic cavitation. ULTRASONICS SONOCHEMISTRY 2023; 95:106400. [PMID: 37060711 PMCID: PMC10085970 DOI: 10.1016/j.ultsonch.2023.106400] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Revised: 03/23/2023] [Accepted: 04/05/2023] [Indexed: 06/19/2023]
Abstract
The COVID -19 pandemic reminded us that we need better contingency plans to prevent the spread of infectious agents and the occurrence of epidemics or pandemics. Although the transmissibility of SARS-CoV-2 in water has not been confirmed, there are studies that have reported on the presence of infectious coronaviruses in water and wastewater samples. Since standard water treatments are not designed to eliminate viruses, it is of utmost importance to explore advanced treatment processes that can improve water treatment and help inactivate viruses when needed. This is the first study to investigate the effects of hydrodynamic cavitation on the inactivation of bacteriophage phi6, an enveloped virus used as a SARS-CoV-2 surrogate in many studies. In two series of experiments with increasing and constant sample temperature, virus reduction of up to 6.3 logs was achieved. Inactivation of phi6 at temperatures of 10 and 20 °C occurs predominantly by the mechanical effect of cavitation and results in a reduction of up to 4.5 logs. At 30 °C, the reduction increases to up to 6 logs, where the temperature-induced increased susceptibility of the viral lipid envelope makes the virus more prone to inactivation. Furthermore, the control experiments without cavitation showed that the increased temperature alone is not sufficient to cause inactivation, but that additional mechanical stress is still required. The RNA degradation results confirmed that virus inactivation was due to the disrupted lipid bilayer and not to RNA damage. Hydrodynamic cavitation, therefore, has the potential to inactivate current and potentially emerging enveloped pathogenic viruses in water at lower, environmentally relevant temperatures.
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Affiliation(s)
- Mojca Zupanc
- Faculty of Mechanical Engineering, University of Ljubljana, Ljubljana, Slovenia
| | - Jure Zevnik
- Faculty of Mechanical Engineering, University of Ljubljana, Ljubljana, Slovenia
| | - Arijana Filipić
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
| | - Ion Gutierrez-Aguirre
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
| | - Meta Ješelnik
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
| | - Tamara Košir
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
| | - Jernej Ortar
- Faculty of Mechanical Engineering, University of Ljubljana, Ljubljana, Slovenia
| | - Matevž Dular
- Faculty of Mechanical Engineering, University of Ljubljana, Ljubljana, Slovenia
| | - Martin Petkovšek
- Faculty of Mechanical Engineering, University of Ljubljana, Ljubljana, Slovenia.
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