Population structure and spread of the polychaete Diopatra biscayensis along the French Atlantic coast: human-assisted transport by-passes larval dispersal

An Introduction to Diopatra, the Amazing Ecosystem Engineering Polychaete

The annelid genus Diopatra occurs in all major oceans but is best represented in the shallow depths of warmer waters, where it lives in elaborately decorated tubes. This paper provides an introduction to the animals, discussing their history and diversity. We describe and illustrate its morphology and geographic distribution. While they were thought to be predominantly gonochoristic, recent reproductive studies show that several species are protandric simultaneous hermaphrodites. Development is by broadcast spawning with a brief pelagic stage or direct development in the parental tube or egg mass attached to it. Diopatra is a key ecosystem engineer, altering water flow and deposition and increasing the availability of refugia. We also discuss its harvesting as fishing bait, its role as an alien or introduced species, its capacity to regenerate, its therapeutic potential, and its applications as a bioindicator species for climate change, geographic distribution changes, and dispersal.

A Review of Diopatra Ecology: Current Knowledge, Open Questions, and Future Threats for an Ecosystem Engineering Polychaete

A well-known example of marine ecosystem engineering is the annelid genus Diopatra, which builds large tubes in coastal sediments worldwide. Early studies of Diopatra were among the first to recognize the importance of facilitation in ecology, and Diopatra has become a key marine soft-sediment application of the ecosystem engineering concept. Here, I review our current knowledge of Diopatra ecology, including its natural history, ecosystem engineering effects, and trophic relationships. I particularly explore how human activities are influencing Diopatra in terms of climate change, bait fishing, and species invasions. Most of what we know about Diopatra ecology comes from focal studies of a few species in a few well-known regions. Further evaluating how our current understanding applies to other species and/or other regions will help to refine and deepen our understanding of structure and function in marine systems.

The impact of aquaculture on the genetics and distribution of the onuphid annelid Diopatra biscayensis

AIM

Evolutionary history of natural populations can be confounded by human intervention such as the case of decorator worm species Diopatra (Onuphidae), which have a history of being transported through anthropogenic activities. Because they build tubes and act as ecosystem engineers, they can have a large impact on the overall ecosystem in which they occur. One conspicuous member, Diopatra biscayensis, which was only described in 2012, has a fragmented distribution that includes the Bay of Biscay and the Normanno-Breton Gulf in the English Channel. This study explores the origin of these worms in the Normanno-Breton region, which has been debated to either be the result of a historic range contraction from a relic continuous population or a more recent introduction.

LOCATION

Northeastern Atlantic, the Bay of Biscay, and the Normanno-Breton Gulf.

METHODS

We utilized a RAD-tag-based SNP approach to create a reduced genomic data set to recover fine-scale population structure and infer which hypothesis best describes the D. biscayensis biogeographic distribution. The reduced genomic data set was used to calculate standard genetic diversities and genetic differentiation statistics, and utilized various clustering analyses, including PCAs, DAPC, and admixture.

RESULTS

Clustering analyses were consistent with D. biscayensis as a single population spanning the Bay of Biscay to the Normanno-Breton Gulf in the English Channel, although unexpected genetic substructure was recovered from Arcachon Bay, in the middle of its geographic range. Consistent with a hypothesized introduction, the isolated Sainte-Anne locality in the Normanno-Breton Gulf was recovered to be a subset of the diversity found in the rest of the Bay of Biscay.

MAIN CONCLUSIONS

These results are congruent with previous simulations that did not support connectivity from the Bay of Biscay to the Normanno-Breton Gulf by natural dispersal. These genomic findings, with support from previous climatic studies, further support the hypothesis that D. biscayensis phylogeographic connectivity is the result of introductions, likely through the regions' rich shellfish aquaculture, and not of a historically held range contraction.

Phylogeography and genetic diversity of the widespread katydid Ducetia japonica (Thunberg, 1815) across China

Habitat fragmentation can lower migration rates and genetic connectivity among remaining populations of native species. Ducetia japonica is one of the most widespread katydids in China, but little is known about its genetic structure and phylogeographic distribution. We combined the five-prime region of cytochrome c oxidase subunit I (COI-5P), 11 newly developed microsatellite loci coupled with an ecological niche model (ENM) to examine the genetic diversity and population structure of D. japonica in China and beyond to Laos and Singapore. Both Bayesian inference (BI) and haplotype network methods revealed six mitochondrial COI-5P lineages. The distribution of COI-5P haplotypes may not demonstrate significant phylogeographic structure (N ST > G ST, p > .05). The STRUCTURE analysis based on microsatellite data also revealed six genetic clusters, but discordant with those obtained from COI-5P haplotypes. For both COI-5P and microsatellite data, Mantel tests revealed a significant positive correlation between geographic and genetic distances in mainland China. Bayesian skyline plot (BSP) analyses indicated that the population size of D. japonica's three major mitochondrial COI-5P lineages were seemingly not affected by last glacial maximum (LGM, 0.015-0.025 Mya). The ecological niche models showed that the current distribution of D. japonica was similar to the species' distribution during the LGM period and only slightly extended in northern China. Further phylogeographic studies based on more extensive sampling are needed to identify specific locations of glacial refugia in northern China.

Environmental Fate of Multistressors on Carpet Shell Clam Ruditapes decussatus: Carbon Nanoparticles and Temperature Variation

Ruditapes decussatus is a native clam from the Southern Europe and Mediterranean area, relevant to the development of sustainable aquaculture in these regions. As sessile organisms, bivalves are likely to be exposed to chemical contaminations and environmental changes in the aquatic compartment and are widely used as bioindicator species. Carbon-based nanomaterials (CNTs) use is increasing and, consequently, concentrations of these contaminants in aquatic systems will rise. Therefore, it is imperative to assess the potential toxic effects of such compounds and the interactions with environmental factors such as water temperature. For this, we exposed R. decussatus clams to four different water temperatures (10, 15, 20 and 25 °C) in the presence or absence of CNTs for 96 h. Different parameters related with oxidative stress status, aerobic metabolism, energy reserves and neurotoxicity were evaluated. The relationship and differences among water temperatures and contamination were highlighted by principal coordinates analysis (PCO). CNTs exposure increased oxidative damage as protein carbonylation (PC) in exposed clams at 10 °C. Higher temperatures (25 °C) were responsible for the highest redox status (ratio between reduced and oxidized glutathione, GSH/GSSG) observed as well as neurotoxic effects (acetylcholinesterase—AChE activity). Antioxidant defenses were also modulated by the combination of CNTs exposure with water temperatures, with decrease of glutathione peroxidase (GR) activity at 15 °C and of glutathione S-transferases (GSTs) activity at 20 °C, when compared with unexposed clams. Clams energy reserves were not altered, probably due to the short exposure period. Overall, the combined effects of CNTs exposure and increasing water temperatures can impair R. decussatus cellular homeostasis inducing oxidative stress and damage.

Human-Mediated Dispersal and the Rewiring of Spatial Networks

Humans fundamentally affect dispersal, directly by transporting individuals and indirectly by altering landscapes and natural vectors. This human-mediated dispersal (HMD) modifies long-distance dispersal, changes dispersal paths, and overall benefits certain species or genotypes while disadvantaging others. HMD is leading to radical changes in the structure and functioning of spatial networks, which are likely to intensify as human activities increase in scope and extent. Here, we provide an overview to guide research into HMD and the resulting rewiring of spatial networks, making predictions about the ecological and evolutionary consequences and how these vary according to spatial scale and the traits of species. Future research should consider HMD holistically, assessing the range of direct and indirect processes to understand the complex impacts on eco-evolutionary dynamics.

The effects of water acidification, temperature and salinity on the regenerative capacity of the polychaete Diopatra neapolitana

Changes in seawater pH, temperature and salinity are expected to occur in the near future, which can be a threat to aquatic systems, mainly for marine coastal areas, and their inhabiting species. Hence, the present study proposes to evaluate the effects of temperature shifts, pH decrease and salinity changes in the tissue's regenerative capacity of the polychaete Diopatra neapolitana. This study evidenced that D. neapolitana individuals exposed to lower pH exhibited a significantly lower capacity to regenerate their body, while with the increase of temperature individuals showed a higher capacity to regenerate their tissues. Furthermore, the present work demonstrated that individuals exposed to salinities 28 and 35 did not present significant differences between them, while salinities 21 and 42 negatively influenced the regenerative capacity of D. neapolitana. At the end of regeneration, comparing all conditions, high salinity (42) seemed to have a greater impact on the regenerative capacity of individuals than the other factors, since under this condition individuals took longer to completely regenerate. Overall, this study demonstrated that variations in abiotic factors can strongly affect D. neapolitana's performance.