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Yao LL, Xue B, Ye YF, Wang ZX, Li YY, Zheng BFC, Ju SY, Wang YJ. Structure-Guided Engineering of Carbonyl Reductase LbCR to Simultaneously Enhance Catalytic Activity and Thermostability toward Bulky Ketones. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2025; 73:10470-10481. [PMID: 40257260 DOI: 10.1021/acs.jafc.5c01462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/22/2025]
Abstract
(S)-2-Chloro-1-(2,4-dichlorophenyl)ethanol ((S)-TCPE) is an important building block for the synthesis of antifungal drug luliconazole. Herein, a carbonyl reductase (CR) from Levilactobacillus brevis (LbCR) was identified for synthesis of (S)-TCPE. Through comprehensive Ala scanning and site-saturated mutagenesis (SSM) targeting the residues surrounding the substrate-binding pocket, the "best" variant LbCRM4 (N96V/E145A/A202L/M206A) was developed, which displays a 26.0-fold increase in catalytic activity, 83.5-fold enhancement in half-life (t1/2) at 40 °C (101.4 h), excellent enantioselectivity (>99.9% e.e.), and broad substrate scope. Compared to the wild-type (WT) LbCR, catalytic efficiency (kcat/KM) of LbCRM4 was increased by 28.0 folds. Furthermore, a high concentration of TCAP (400 g/L) can be transformed (99.9% conversion) within 7 h by using LbCRM4 and an isopropanol/alcohol dehydrogenase/NADPH cofactor regeneration system, giving (S)-TCPE in >99.9% e.e., which is the highest recorded space-time yield (STY, 1288.9 g/L/day) to date. Molecular dynamics (MD) simulations and dynamic cross-correlation matrix analysis elucidated the substantial catalytic performance improvement of LbCRM4. Together, the development of LbCRM4 not only overcomes the trade-offs between catalytic activity and thermostability but also affords an efficient biocatalytic approach for the synthesis of (S)-TCPE featuring a record STY, laying a solid foundation for industrial manufacturing of luliconazole and other active pharmaceutical intermediates.
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Affiliation(s)
- Li Li Yao
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, China
- Zhejiang Key Laboratory of Green Manufacturing Technology for Chemical Drugs, Deqing, Hangzhou, Zhejiang 313200, China
- Key Laboratory for Green Pharmaceutical Technology and Equipment (Zhejiang University of Technology) of Ministry of Education, Deqing, Hangzhou, Zhejiang 313200, China
| | - Bin Xue
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, China
- Zhejiang Key Laboratory of Green Manufacturing Technology for Chemical Drugs, Deqing, Hangzhou, Zhejiang 313200, China
- Key Laboratory for Green Pharmaceutical Technology and Equipment (Zhejiang University of Technology) of Ministry of Education, Deqing, Hangzhou, Zhejiang 313200, China
| | - Yuan-Fan Ye
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, China
- Zhejiang Key Laboratory of Green Manufacturing Technology for Chemical Drugs, Deqing, Hangzhou, Zhejiang 313200, China
- Key Laboratory for Green Pharmaceutical Technology and Equipment (Zhejiang University of Technology) of Ministry of Education, Deqing, Hangzhou, Zhejiang 313200, China
| | - Zhi-Xiu Wang
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, China
- Zhejiang Key Laboratory of Green Manufacturing Technology for Chemical Drugs, Deqing, Hangzhou, Zhejiang 313200, China
- Key Laboratory for Green Pharmaceutical Technology and Equipment (Zhejiang University of Technology) of Ministry of Education, Deqing, Hangzhou, Zhejiang 313200, China
| | - Yang-Yang Li
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, China
- Zhejiang Key Laboratory of Green Manufacturing Technology for Chemical Drugs, Deqing, Hangzhou, Zhejiang 313200, China
- Key Laboratory for Green Pharmaceutical Technology and Equipment (Zhejiang University of Technology) of Ministry of Education, Deqing, Hangzhou, Zhejiang 313200, China
| | - Bei-Feng-Chu Zheng
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, China
- Zhejiang Key Laboratory of Green Manufacturing Technology for Chemical Drugs, Deqing, Hangzhou, Zhejiang 313200, China
- Key Laboratory for Green Pharmaceutical Technology and Equipment (Zhejiang University of Technology) of Ministry of Education, Deqing, Hangzhou, Zhejiang 313200, China
| | - Shu-Yun Ju
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, China
- Zhejiang Key Laboratory of Green Manufacturing Technology for Chemical Drugs, Deqing, Hangzhou, Zhejiang 313200, China
- Key Laboratory for Green Pharmaceutical Technology and Equipment (Zhejiang University of Technology) of Ministry of Education, Deqing, Hangzhou, Zhejiang 313200, China
| | - Ya-Jun Wang
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou, Zhejiang 310032, China
- Zhejiang Key Laboratory of Green Manufacturing Technology for Chemical Drugs, Deqing, Hangzhou, Zhejiang 313200, China
- Key Laboratory for Green Pharmaceutical Technology and Equipment (Zhejiang University of Technology) of Ministry of Education, Deqing, Hangzhou, Zhejiang 313200, China
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Lin RD, Xing X, Yu Y, Li WD, Chang DD, Tao FY, Wang N. Theoretical Analysis of Selectivity Differences in Ketoreductases toward Aldehyde and Ketone Carbonyl Groups. J Chem Inf Model 2024; 64:3400-3410. [PMID: 38537611 DOI: 10.1021/acs.jcim.3c01996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/23/2024]
Abstract
Lactobacillus kefir alcohol dehydrogenase (LkADH) and ketoreductase from Chryseobacterium sp. CA49 (ChKRED12) exhibit different chemoselectivity and stereoselectivity toward a substrate with both keto and aldehyde carbonyl groups. LkADH selectively reduces the keto carbonyl group while retaining the aldehyde carbonyl group, producing optically pure R-alcohols. In contrast, ChKRED12 selectively reduces the aldehyde group and exhibits low reactivity toward ketone carbonyls. This study investigated the structural basis for these differences and the role of specific residues in the active site. Molecular dynamics (MD) simulations and quantum chemical calculations were used to investigate the interactions between the substrate and the enzymes and the essential cause of this phenomenon. The present study has revealed that LkADH and ChKRED12 exhibit significant differences in the structure of their respective active pockets, which is a crucial determinant of their distinct chemoselectivity toward the same substrate. Moreover, residues N89, N113, and E144 within LkADH as well as Q151 and D190 within ChKRED12 have been identified as key contributors to substrate stabilization within the active pocket through electrostatic interactions and van der Waals forces, followed by hydride transfer utilizing the coenzyme NADPH. Furthermore, the enantioselectivity mechanism of LkADH has been elucidated using quantum chemical methods. Overall, these findings not only provide fundamental insights into the underlying reasons for the observed differences in selectivity but also offer a detailed mechanistic understanding of the catalytic reaction.
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Affiliation(s)
- Ru-De Lin
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, P. R. China
| | - Xiu Xing
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, P. R. China
| | - Yuan Yu
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, P. R. China
| | - Wen-Dian Li
- Harmful Components and Tar Reduction in Cigarette Key Laboratory of Sichuan Province, China Tobacco Sichuan Industrial Co., Ltd., Chengdu 610066, China
- Sichuan Sanlian New Material Co., Ltd., Chengdu 610041, China
| | - Dan-Dan Chang
- Harmful Components and Tar Reduction in Cigarette Key Laboratory of Sichuan Province, China Tobacco Sichuan Industrial Co., Ltd., Chengdu 610066, China
- Sichuan Sanlian New Material Co., Ltd., Chengdu 610041, China
| | - Fei-Yan Tao
- Harmful Components and Tar Reduction in Cigarette Key Laboratory of Sichuan Province, China Tobacco Sichuan Industrial Co., Ltd., Chengdu 610066, China
- Sichuan Sanlian New Material Co., Ltd., Chengdu 610041, China
| | - Na Wang
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, P. R. China
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Chadha A, Padhi SK, Stella S, Venkataraman S, Saravanan T. Microbial alcohol dehydrogenases: recent developments and applications in asymmetric synthesis. Org Biomol Chem 2024; 22:228-251. [PMID: 38050738 DOI: 10.1039/d3ob01447a] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/06/2023]
Abstract
Alcohol dehydrogenases are a well-known group of enzymes in the class of oxidoreductases that use electron transfer cofactors such as NAD(P)+/NAD(P)H for oxidation or reduction reactions of alcohols or carbonyl compounds respectively. These enzymes are utilized mainly as purified enzymes and offer some advantages in terms of green chemistry. They are environmentally friendly and a sustainable alternative to traditional chemical synthesis of bulk and fine chemicals. Industry has implemented several whole-cell biocatalytic processes to synthesize pharmaceutically active ingredients by exploring the high selectivity of enzymes. Unlike the whole cell system where cofactor regeneration is well conserved within the cellular environment, purified enzymes require additional cofactors or a cofactor recycling system in the reaction, even though cleaner reactions can be carried out with fewer downstream work-up problems. The challenge of producing purified enzymes in large quantities has been solved in large part by the use of recombinant enzymes. Most importantly, recombinant enzymes find applications in many cascade biotransformations to produce several important chiral precursors. Inevitably, several dehydrogenases were engineered as mere recombinant enzymes could not meet the industrial requirements for substrate and stereoselectivity. In recent years, a significant number of engineered alcohol dehydrogenases have been employed in asymmetric synthesis in industry. In a parallel development, several enzymatic and non-enzymatic methods have been established for regenerating expensive cofactors (NAD+/NADP+) to make the overall enzymatic process more efficient and economically viable. In this review article, recent developments and applications of microbial alcohol dehydrogenases are summarized by emphasizing notable examples.
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Affiliation(s)
- Anju Chadha
- Department of Biotechnology, Indian Institute of Technology Madras, Chennai, 600 036, Tamil Nadu, India.
| | - Santosh Kumar Padhi
- Biocatalysis and Enzyme Engineering Laboratory, Department of Biochemistry, School of Life Sciences, University of Hyderabad, Hyderabad 500 046, Telangana, India.
| | - Selvaraj Stella
- Department of Chemistry, Sarah Tucker College (Affiliated to Manonmaniam Sundaranar University), Tirunelveli-627007, Tamil Nadu, India.
| | - Sowmyalakshmi Venkataraman
- Department of Pharmaceutical Chemistry, Sri Ramachandra Faculty of Pharmacy, Sri Ramachandra Institute of Higher Education & Research, Chennai, 600116, Tamil Nadu, India.
| | - Thangavelu Saravanan
- School of Chemistry, University of Hyderabad, Hyderabad 500 046, Telangana, India.
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Mahajan A, Kaur L, Singh G, Dhawan RK, Singh L. Multipotentiality of Luliconazole against Various Fungal Strains: Novel Topical Formulations and Patent Review. RECENT ADVANCES IN ANTI-INFECTIVE DRUG DISCOVERY 2021; 16:182-195. [PMID: 34766898 DOI: 10.2174/2772434416666211111105854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Revised: 08/31/2021] [Accepted: 09/26/2021] [Indexed: 11/22/2022]
Abstract
BACKGROUND Luliconazole is a broad-spectrum antifungal agent with impactful fungicidal and fungistatic activity. It has shown exceptional potency against miscellaneous fungal strains like Candida, Aspergillus, Malassezia, Fusarium species and various dermatophytes. OBJECTIVE Luliconazole belongs to class Ⅱ of the Biopharmaceutical Classification System with low aqueous solubility. Although it is available conventionally as 1% w/v topical cream, it has limitations of lower skin permeation and shorter skin retention. Therefore, nanoformulations based on various polymers and nanostructure carriers can be employed to overcome the impediments regarding topical delivery and efficacy of luliconazole. METHODS In this review, we have tried to provide insight into the literature gathered from authentic web resources and research articles regarding recent research conducted on the subject of formulation development, patents, and future research requisites of luliconazole. RESULTS Nanoformulations can play a fundamental role in improving topical delivery by escalating dermal localization and skin penetration. Fabricating luliconazole into nanoformulations can overcome the drawbacks and can efficiently enhance its antimycotic activity. CONCLUSION It has been concluded that luliconazole has exceptional potential in the treatment of various fungal infections, and therefore, it should be exploited to its maximum for its innovative application in the field of mycology.
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Affiliation(s)
- Ayushi Mahajan
- Department of Pharmaceutics, Khalsa College of Pharmacy, Amritsar, 143001, India
| | - Lakhvir Kaur
- Department of Pharmaceutics, Khalsa College of Pharmacy, Amritsar, 143001, India
| | - Gurjeet Singh
- Department of Pharmaceutics, Khalsa College of Pharmacy, Amritsar, 143001, India
| | - R K Dhawan
- Department of Pharmacology, Khalsa College of Pharmacy, Amritsar, 143001, India
| | - Lovepreet Singh
- Department of Pharmaceutics, Khalsa College of Pharmacy, Amritsar, 143001, India
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