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Saleh AA, Rashad AMA, Hassanine NNAM, Sharaby MA, Zhao Y. Evaluation of morphological traits and physiological variables of several Chinese goat breeds and their crosses. Trop Anim Health Prod 2021; 53:74. [PMID: 33400045 DOI: 10.1007/s11250-020-02549-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Accepted: 12/22/2020] [Indexed: 10/22/2022]
Abstract
The current study was undertaken to evaluate some morphological traits of the goat breeds raised in Southwest China. The field experimentation and data collection were from 434 animals presenting seven breeds of the Dazu black goat (DBG; n = 203), Saanen milk goat (SMG; n = 50), Black Boer × Dazu black goat (BXC; n = 28), Hechuan white goat (HWG; n = 49), Inner Mongolia Cashmere goat (IMCG; n = 25), IMCG × DBG (F1; n = 57) and F1 × F1 (F2; n = 22). All studied animals were adult and selected to be at the same age (36.50 ± 0.75 months). After editing, more than 20 morphological and production traits like body condition score (BCS), testicle measurements, coat colour, fibre traits, skin colour, horn colour, horn shape, horn orientation, wattles, front hair, beard, ear shape, ear size, rump angle, hind leg angulation and physiological variables were analysed. BXC and DBG had dark coat colour, whilst SMG, HWG and IMCG had light colour, whilst F1 and F2 ranged from light to dark coat colour. Concerning BCS, the breeds BXC and DBG were characterized as fat goats, whilst SMG, HWG, F1 and F2 were average, whilst IMCG was thin. The maximum values for testis measurements were recorded for BXC, SMG and DBG. For fibre traits, IMCG, F1 and F2 were the most superior. BXC and DBG males have good fertility parameters. The highest values for rectal temperature, skin temperature and breath rate were recorded for SMG. These findings revealed the presence of a wide range of morphological differences among studied goat breeds. Such diversity in the performance of goat breeds raised in Southwest China is crucial to implement reliable selection strategies for breeding goats in this area.
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Affiliation(s)
- Ahmed A Saleh
- College of Animal Science and Technology, Chongqing Key Laboratory of Forage & Herbivore, Chongqing Engineering Research Centre for Herbivores Resource Protection and Utilization, Southwest University, Chongqing, 400715, People's Republic of China.,Animal and Fish Production Department, Faculty of Agriculture (Alshatby), Alexandria University, Alexandria, 11865, Egypt
| | - Amr M A Rashad
- Animal and Fish Production Department, Faculty of Agriculture (Alshatby), Alexandria University, Alexandria, 11865, Egypt
| | - Nada N A M Hassanine
- College of Animal Science and Technology, Chongqing Key Laboratory of Forage & Herbivore, Chongqing Engineering Research Centre for Herbivores Resource Protection and Utilization, Southwest University, Chongqing, 400715, People's Republic of China
| | - Mahmoud A Sharaby
- Animal and Fish Production Department, Faculty of Agriculture (Alshatby), Alexandria University, Alexandria, 11865, Egypt
| | - Yongju Zhao
- College of Animal Science and Technology, Chongqing Key Laboratory of Forage & Herbivore, Chongqing Engineering Research Centre for Herbivores Resource Protection and Utilization, Southwest University, Chongqing, 400715, People's Republic of China.
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Li X, Su R, Wan W, Zhang W, Jiang H, Qiao X, Fan Y, Zhang Y, Wang R, Liu Z, Wang Z, Liu B, Ma Y, Zhang H, Zhao Q, Zhong T, Di R, Jiang Y, Chen W, Wang W, Dong Y, Li J. Identification of selection signals by large-scale whole-genome resequencing of cashmere goats. Sci Rep 2017; 7:15142. [PMID: 29123196 PMCID: PMC5680388 DOI: 10.1038/s41598-017-15516-0] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Accepted: 10/27/2017] [Indexed: 01/14/2023] Open
Abstract
Inner Mongolia and Liaoning cashmere goats are two outstanding Chinese multipurpose breeds that adapt well to the semi-arid temperate grassland. These two breeds are characterized by their soft cashmere fibers, thus making them great models to identify genomic regions that are associated with cashmere fiber traits. Whole-genome sequencing of 70 cashmere goats produced more than 5.52 million single-nucleotide polymorphisms and 710,600 short insertions and deletions. Further analysis of these genetic variants showed some population-specific molecular markers for the two cashmere goat breeds that are otherwise phenotypically similar. By analyzing FST and θπ outlier values, we identified 135 genomic regions that were associated with cashmere fiber traits within the cashmere goat populations. These selected genomic regions contained genes, which are potential involved in the production of cashmere fiber, such as FGF5, SGK3, IGFBP7, OXTR, and ROCK1. Gene ontology enrichment analysis of identified short insertions and deletions also showed enrichment in keratinocyte differentiation and epidermal cell differentiation. These findings demonstrate that this genomic resource will facilitate the breeding of cashmere goat and other Capra species in future.
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Affiliation(s)
- Xiaokai Li
- College of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China
| | - Rui Su
- College of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Key Laboratory of Animal Genetics, Breeding and Reproduction - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Key Laboratory of Mutton Sheep Genetics and Breeding, Ministry of Agriculture, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Engineering Research Center for Goat Genetics and Breeding - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, 650223, China
| | - Wenting Wan
- Center for Ecological and Environmental Sciences, Key Laboratory for Space Bioscience & Biotechnology, Northwestern Polytechnical University, Xi'an, Shaanxi, 710072, China
| | - Wenguang Zhang
- College of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China
| | - Huaizhi Jiang
- College of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin, 130118, China
| | - Xian Qiao
- College of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China
| | - Yixing Fan
- College of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China
| | - Yanjun Zhang
- College of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Key Laboratory of Animal Genetics, Breeding and Reproduction - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Key Laboratory of Mutton Sheep Genetics and Breeding, Ministry of Agriculture, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Engineering Research Center for Goat Genetics and Breeding - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China
| | - Ruijun Wang
- College of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Key Laboratory of Animal Genetics, Breeding and Reproduction - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Key Laboratory of Mutton Sheep Genetics and Breeding, Ministry of Agriculture, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Engineering Research Center for Goat Genetics and Breeding - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China
| | - Zhihong Liu
- College of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Key Laboratory of Animal Genetics, Breeding and Reproduction - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Key Laboratory of Mutton Sheep Genetics and Breeding, Ministry of Agriculture, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Engineering Research Center for Goat Genetics and Breeding - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China
| | - Zhiying Wang
- College of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Key Laboratory of Animal Genetics, Breeding and Reproduction - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Key Laboratory of Mutton Sheep Genetics and Breeding, Ministry of Agriculture, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.,Engineering Research Center for Goat Genetics and Breeding - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China
| | - Bin Liu
- Institute of Animal Husbandry, Academy of Agriculture and Stockbreeding Sciences, Hohhot, Inner Mongolia, 010030, China
| | - Yuehui Ma
- The Key Laboratory for Farm Animal Genetic Resources and Utilization of Ministry of Agriculture of China, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Hongping Zhang
- Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Qianjun Zhao
- The Key Laboratory for Farm Animal Genetic Resources and Utilization of Ministry of Agriculture of China, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Tao Zhong
- Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Ran Di
- The Key Laboratory for Farm Animal Genetic Resources and Utilization of Ministry of Agriculture of China, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Yu Jiang
- College of Animal Science and Technology, Northwest A&F University, Yangling, 712100, China
| | - Wei Chen
- College of Biological Big Data, Yunnan Agriculture University, Kunming, Yunnan, 650504, China.,Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming, Yunnan, 650201, China
| | - Wen Wang
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, 650223, China.
| | - Yang Dong
- College of Biological Big Data, Yunnan Agriculture University, Kunming, Yunnan, 650504, China. .,BGI-Shenzhen, Shenzhen, Guangdong, 518083, China. .,Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming, Yunnan, 650201, China.
| | - Jinquan Li
- College of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China. .,Key Laboratory of Animal Genetics, Breeding and Reproduction - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China. .,Key Laboratory of Mutton Sheep Genetics and Breeding, Ministry of Agriculture, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China. .,Engineering Research Center for Goat Genetics and Breeding - Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010018, China.
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