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Wang H, Wu H, Wang Z, Yue P, Ni D, Heng PA, Wang Y. A Narrative Review of Image Processing Techniques Related to Prostate Ultrasound. ULTRASOUND IN MEDICINE & BIOLOGY 2025; 51:189-209. [PMID: 39551652 DOI: 10.1016/j.ultrasmedbio.2024.10.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Revised: 09/15/2024] [Accepted: 10/06/2024] [Indexed: 11/19/2024]
Abstract
Prostate cancer (PCa) poses a significant threat to men's health, with early diagnosis being crucial for improving prognosis and reducing mortality rates. Transrectal ultrasound (TRUS) plays a vital role in the diagnosis and image-guided intervention of PCa. To facilitate physicians with more accurate and efficient computer-assisted diagnosis and interventions, many image processing algorithms in TRUS have been proposed and achieved state-of-the-art performance in several tasks, including prostate gland segmentation, prostate image registration, PCa classification and detection and interventional needle detection. The rapid development of these algorithms over the past 2 decades necessitates a comprehensive summary. As a consequence, this survey provides a narrative review of this field, outlining the evolution of image processing methods in the context of TRUS image analysis and meanwhile highlighting their relevant contributions. Furthermore, this survey discusses current challenges and suggests future research directions to possibly advance this field further.
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Affiliation(s)
- Haiqiao Wang
- Medical UltraSound Image Computing (MUSIC) Lab, Smart Medical Imaging, Learning and Engineering (SMILE) Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University, Shenzhen, China; Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, China
| | - Hong Wu
- Medical UltraSound Image Computing (MUSIC) Lab, Smart Medical Imaging, Learning and Engineering (SMILE) Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University, Shenzhen, China
| | - Zhuoyuan Wang
- Medical UltraSound Image Computing (MUSIC) Lab, Smart Medical Imaging, Learning and Engineering (SMILE) Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University, Shenzhen, China
| | - Peiyan Yue
- Medical UltraSound Image Computing (MUSIC) Lab, Smart Medical Imaging, Learning and Engineering (SMILE) Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University, Shenzhen, China
| | - Dong Ni
- Medical UltraSound Image Computing (MUSIC) Lab, Smart Medical Imaging, Learning and Engineering (SMILE) Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University, Shenzhen, China
| | - Pheng-Ann Heng
- Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, China
| | - Yi Wang
- Medical UltraSound Image Computing (MUSIC) Lab, Smart Medical Imaging, Learning and Engineering (SMILE) Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University, Shenzhen, China.
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Kim H, Kang SW, Kim JH, Nagar H, Sabuncu M, Margolis DJA, Kim CK. The role of AI in prostate MRI quality and interpretation: Opportunities and challenges. Eur J Radiol 2023; 165:110887. [PMID: 37245342 DOI: 10.1016/j.ejrad.2023.110887] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2023] [Revised: 05/06/2023] [Accepted: 05/20/2023] [Indexed: 05/30/2023]
Abstract
Prostate MRI plays an important role in imaging the prostate gland and surrounding tissues, particularly in the diagnosis and management of prostate cancer. With the widespread adoption of multiparametric magnetic resonance imaging in recent years, the concerns surrounding the variability of imaging quality have garnered increased attention. Several factors contribute to the inconsistency of image quality, such as acquisition parameters, scanner differences and interobserver variabilities. While efforts have been made to standardize image acquisition and interpretation via the development of systems, such as PI-RADS and PI-QUAL, the scoring systems still depend on the subjective experience and acumen of humans. Artificial intelligence (AI) has been increasingly used in many applications, including medical imaging, due to its ability to automate tasks and lower human error rates. These advantages have the potential to standardize the tasks of image interpretation and quality control of prostate MRI. Despite its potential, thorough validation is required before the implementation of AI in clinical practice. In this article, we explore the opportunities and challenges of AI, with a focus on the interpretation and quality of prostate MRI.
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Affiliation(s)
- Heejong Kim
- Department of Radiology, Weill Cornell Medical College, 525 E 68th St Box 141, New York, NY 10021, United States
| | - Shin Won Kang
- Research Institute for Future Medicine, Samsung Medical Center, Republic of Korea
| | - Jae-Hun Kim
- Department of Radiology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Republic of Korea
| | - Himanshu Nagar
- Department of Radiation Oncology, Weill Cornell Medical College, 525 E 68th St, New York, NY 10021, United States
| | - Mert Sabuncu
- Department of Radiology, Weill Cornell Medical College, 525 E 68th St Box 141, New York, NY 10021, United States
| | - Daniel J A Margolis
- Department of Radiology, Weill Cornell Medical College, 525 E 68th St Box 141, New York, NY 10021, United States.
| | - Chan Kyo Kim
- Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, Republic of Korea
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Baum ZMC, Hu Y, Barratt DC. Meta-Learning Initializations for Interactive Medical Image Registration. IEEE TRANSACTIONS ON MEDICAL IMAGING 2023; 42:823-833. [PMID: 36322502 PMCID: PMC7614355 DOI: 10.1109/tmi.2022.3218147] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
We present a meta-learning framework for interactive medical image registration. Our proposed framework comprises three components: a learning-based medical image registration algorithm, a form of user interaction that refines registration at inference, and a meta-learning protocol that learns a rapidly adaptable network initialization. This paper describes a specific algorithm that implements the registration, interaction and meta-learning protocol for our exemplar clinical application: registration of magnetic resonance (MR) imaging to interactively acquired, sparsely-sampled transrectal ultrasound (TRUS) images. Our approach obtains comparable registration error (4.26 mm) to the best-performing non-interactive learning-based 3D-to-3D method (3.97 mm) while requiring only a fraction of the data, and occurring in real-time during acquisition. Applying sparsely sampled data to non-interactive methods yields higher registration errors (6.26 mm), demonstrating the effectiveness of interactive MR-TRUS registration, which may be applied intraoperatively given the real-time nature of the adaptation process.
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Affiliation(s)
- Zachary M. C. Baum
- Wellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London W1W 7TS, U.K.,; UCL Centre for Medical Image Computing, University College London, London W1W 7TS, U.K
| | - Yipeng Hu
- Wellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London W1W 7TS, U.K.,; UCL Centre for Medical Image Computing, University College London, London W1W 7TS, U.K
| | - Dean C. Barratt
- Wellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London W1W 7TS, U.K.,; UCL Centre for Medical Image Computing, University College London, London W1W 7TS, U.K
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4
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Wu X, Huang W, Wu X, Wu S, Huang J. Classification of thermal image of clinical burn based on incremental reinforcement learning. Neural Comput Appl 2022. [DOI: 10.1007/s00521-021-05772-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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5
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Uzunova H, Wilms M, Forkert ND, Handels H, Ehrhardt J. A systematic comparison of generative models for medical images. Int J Comput Assist Radiol Surg 2022; 17:1213-1224. [PMID: 35128605 PMCID: PMC9206635 DOI: 10.1007/s11548-022-02567-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Accepted: 01/14/2022] [Indexed: 11/05/2022]
Abstract
Abstract
Purpose
This work aims for a systematic comparison of popular shape and appearance models. Here, two statistical and four deep-learning-based shape and appearance models are compared and evaluated in terms of their expressiveness described by their generalization ability and specificity as well as further properties like input data format, interpretability and latent space distribution and dimension.
Methods
Classical shape models and their locality-based extension are considered next to autoencoders, variational autoencoders, diffeomorphic autoencoders and generative adversarial networks. The approaches are evaluated in terms of generalization ability, specificity and likeness depending on the amount of training data. Furthermore, various latent space metrics are presented in order to capture further major characteristics of the models.
Results
The experimental setup showed that locality statistical shape models yield best results in terms of generalization ability for 2D and 3D shape modeling. However, the deep learning approaches show strongly improved specificity. In the case of simultaneous shape and appearance modeling, the neural networks are able to generate more realistic and diverse appearances. A major drawback of the deep-learning models is, however, their impaired interpretability and ambiguity of the latent space.
Conclusions
It can be concluded that for applications not requiring particularly good specificity, shape modeling can be reliably established with locality-based statistical shape models, especially when it comes to 3D shapes. However, deep learning approaches are more worthwhile in terms of appearance modeling.
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Baum ZMC, Hu Y, Barratt DC. Real-time multimodal image registration with partial intraoperative point-set data. Med Image Anal 2021; 74:102231. [PMID: 34583240 PMCID: PMC8566274 DOI: 10.1016/j.media.2021.102231] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 07/16/2021] [Accepted: 09/10/2021] [Indexed: 11/28/2022]
Abstract
We present Free Point Transformer (FPT) - a deep neural network architecture for non-rigid point-set registration. Consisting of two modules, a global feature extraction module and a point transformation module, FPT does not assume explicit constraints based on point vicinity, thereby overcoming a common requirement of previous learning-based point-set registration methods. FPT is designed to accept unordered and unstructured point-sets with a variable number of points and uses a "model-free" approach without heuristic constraints. Training FPT is flexible and involves minimizing an intuitive unsupervised loss function, but supervised, semi-supervised, and partially- or weakly-supervised training are also supported. This flexibility makes FPT amenable to multimodal image registration problems where the ground-truth deformations are difficult or impossible to measure. In this paper, we demonstrate the application of FPT to non-rigid registration of prostate magnetic resonance (MR) imaging and sparsely-sampled transrectal ultrasound (TRUS) images. The registration errors were 4.71 mm and 4.81 mm for complete TRUS imaging and sparsely-sampled TRUS imaging, respectively. The results indicate superior accuracy to the alternative rigid and non-rigid registration algorithms tested and substantially lower computation time. The rapid inference possible with FPT makes it particularly suitable for applications where real-time registration is beneficial.
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Affiliation(s)
- Zachary M C Baum
- Centre for Medical Image Computing, University College London, London, UK; Wellcome / EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.
| | - Yipeng Hu
- Centre for Medical Image Computing, University College London, London, UK; Wellcome / EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK
| | - Dean C Barratt
- Centre for Medical Image Computing, University College London, London, UK; Wellcome / EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK
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Rai P, Dakua S, Abinahed J, Balakrishnan S. Feasibility and Efficacy of Fusion Imaging Systems for Immediate Post Ablation Assessment of Liver Neoplasms: Protocol for a Rapid Systematic Review. Int J Surg Protoc 2021; 25:209-215. [PMID: 34611571 PMCID: PMC8447974 DOI: 10.29337/ijsp.162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Accepted: 09/02/2021] [Indexed: 11/24/2022] Open
Abstract
Introduction: Percutaneous thermal ablation is widely adopted as a curative treatment approach for unresectable liver neoplasms. Accurate immediate assessment of therapeutic response post-ablation is critical to achieve favourable outcomes. The conventional technique of side-by-side comparison of pre- and post-ablation scans is challenging and hence there is a need for improved methods, which will accurately evaluate the immediate post-therapeutic response. Objectives and Significance: This review summarizes the findings of studies investigating the feasibility and efficacy of the fusion imaging systems in the immediate post-operative assessment of the therapeutic response to thermal ablation in liver neoplasms. The findings could potentially empower the clinicians with updated knowledge of the state-of-the-art in the assessment of treatment response for unresectable liver neoplasms. Methods and Analysis: A rapid review will be performed on publicly available major electronic databases to identify articles reporting the feasibility and efficacy of the fusion imaging systems in the immediate assessment of the therapeutic response to thermal ablation in liver neoplasms. The risk of bias and quality of articles will be assessed using the Cochrane risk of bias tool 2.0 and Newcastle Ottawa tool. Ethics and Dissemination: Being a review, we do not anticipate the need for any approval from the Institutional Review Board. The outcomes of this study will be published in a peer-reviewed journal. Highlights Evaluation of the therapeutic response in liver neoplasms immediately post-ablation is critical to achieve favourable patient outcomes. We will examine the feasibility and technical efficacy of different fusion imaging systems in assessing the immediate treatment response post-ablation. The findings are expected to guide the clinicians with updated knowledge on the state-of-the-art when assessing the immediate treatment response for unresectable liver neoplasms.
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Affiliation(s)
- Pragati Rai
- Department of Surgery, Hamad Medical Corporation, Doha, Qatar
| | - Sarada Dakua
- Department of Surgery, Hamad Medical Corporation, Doha, Qatar
| | - Julien Abinahed
- Department of Surgery, Hamad Medical Corporation, Doha, Qatar
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Kilian-Meneghin J, Ma T, Kumaraswamy L. Impact of prostate focused alignment on planned pelvic lymph node dose. J Appl Clin Med Phys 2021; 22:27-35. [PMID: 34231945 PMCID: PMC8292696 DOI: 10.1002/acm2.13092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Revised: 09/13/2019] [Accepted: 10/06/2019] [Indexed: 11/11/2022] Open
Abstract
Purpose Prostate patients with positive lymph node margins receive an initial course of 45 Gy to the planning target volume (PTV) comprised of prostate, seminal vesicles, and lymph nodes with a 1‐cm margin. The prostate is localized via implanted fiducial markers before each fraction is delivered using portal‐imaging. However, the pelvic lymph nodes are affixed to the bony anatomy and are not mobile in concert with the prostate. The aim of this study was to determine whether a significant difference in pelvic lymph node coverage exists between planned and delivered external beam therapy treatments for these patients. Methods The recorded prostate motions were gathered for 19 patients; conjointly the pelvic lymph node motions were determined by manual registration of the bony anatomy in the kV‐images. The difference between the prostate and the bony anatomy coordinates was input into Eclipse as field shifts to represent the deviation in planned vs delivered pelvic lymph node coverage. Results Structure volume at V(100) was recorded for each patient for two structures: summed pelvic lymph nodes (LN CTV) and pelvic lymph nodes +1 cm margin (LN PTV) to express their contribution to the PTV. For the LN PTV, the average difference between the planned coverage and calculated delivered coverage was 3.5%, with a paired t‐test value of P = 0.005. Based upon bony anatomy registration, 26% of patients received less than 95% dose coverage using V(100) criteria for LN PTV. Dose value differences between the two plans at minimum were 6.96 ± 6.23 Gy, at mean were 0.54 ± 0.40 Gy, and at maximum were 0.10 ± 0.29 Gy. For the LN CTV, the average difference between the planned coverage and calculated delivered coverage was 1%, with a paired t‐test value of P = 0.53. Conclusions The results indicate a significant difference exists between the planned coverage and calculated delivered coverage for the LN PTV. There was no significant difference found for the LN CTV. We conclude that lymph node motion must be considered with the prostate motion when aligning patients before each fraction.
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Affiliation(s)
| | - Tianjun Ma
- Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA
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Lian J, Zhang M, Jiang N, Bi W, Dong X. Feature Extraction of Kidney Tissue Image Based on Ultrasound Image Segmentation. JOURNAL OF HEALTHCARE ENGINEERING 2021; 2021:9915697. [PMID: 33986943 PMCID: PMC8093061 DOI: 10.1155/2021/9915697] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 04/09/2021] [Accepted: 04/16/2021] [Indexed: 11/17/2022]
Abstract
The kidney tissue image is affected by other interferences in the tissue, which makes it difficult to extract the kidney tissue image features, and it is difficult to judge the lesion characteristics and types by intelligent feature recognition. In order to improve the efficiency and accuracy of feature extraction of kidney tissue images, refer to the ultrasonic heart image for analysis and then apply it to the feature extraction of kidney tissue. This paper proposes a feature extraction method based on ultrasound image segmentation. Moreover, this study combines the optical flow method and the speckle tracking algorithm to select the best image tracking method and optimizes the algorithm speed through the full search method and the two-dimensional log search method. In addition, this study verifies the performance of the method proposed in this paper through comparative experimental research, and this study combines statistical analysis methods to perform data analysis. The research results show that the algorithm proposed in this paper has a certain effect.
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Affiliation(s)
- Jie Lian
- Department of Ultrasound, Harbin Medical University Fourth Hospital, Harbin 150001, Heilongjiang, China
| | - Mingyu Zhang
- Department of Cardiology, Harbin Medical University Fourth Hospital, Harbin 150001, Heilongjiang, China
| | - Na Jiang
- Department of Ultrasound, Harbin Medical University Fourth Hospital, Harbin 150001, Heilongjiang, China
| | - Wei Bi
- Department of Ultrasound, Harbin Medical University Fourth Hospital, Harbin 150001, Heilongjiang, China
| | - Xiaoqiu Dong
- Department of Ultrasound, Harbin Medical University Fourth Hospital, Harbin 150001, Heilongjiang, China
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Stavrinides V, Syer T, Hu Y, Giganti F, Freeman A, Karapanagiotis S, Bott SRJ, Brown LC, Burns-Cox N, Dudderidge TJ, Bosaily AES, Frangou E, Ghei M, Henderson A, Hindley RG, Kaplan RS, Oldroyd R, Parker C, Persad R, Rosario DJ, Shergill IS, Echeverria LMC, Norris JM, Winkler M, Barratt D, Kirkham A, Punwani S, Whitaker HC, Ahmed HU, Emberton M. False Positive Multiparametric Magnetic Resonance Imaging Phenotypes in the Biopsy-naïve Prostate: Are They Distinct from Significant Cancer-associated Lesions? Lessons from PROMIS. Eur Urol 2021; 79:20-29. [PMID: 33051065 PMCID: PMC7772750 DOI: 10.1016/j.eururo.2020.09.043] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Accepted: 09/21/2020] [Indexed: 01/08/2023]
Abstract
BACKGROUND False positive multiparametric magnetic resonance imaging (mpMRI) phenotypes prompt unnecessary biopsies. The Prostate MRI Imaging Study (PROMIS) provides a unique opportunity to explore such phenotypes in biopsy-naïve men with raised prostate-specific antigen (PSA) and suspected cancer. OBJECTIVE To compare mpMRI lesions in men with/without significant cancer on transperineal mapping biopsy (TPM). DESIGN, SETTING, AND PARTICIPANTS PROMIS participants (n=235) underwent mpMRI followed by a combined biopsy procedure at University College London Hospital, including 5-mm TPM as the reference standard. Patients were divided into four mutually exclusive groups according to TPM findings: (1) no cancer, (2) insignificant cancer, (3) definition 2 significant cancer (Gleason ≥3+4 of any length and/or maximum cancer core length ≥4mm of any grade), and (4) definition 1 significant cancer (Gleason ≥4+3 of any length and/or maximum cancer core length ≥6mm of any grade). OUTCOME MEASUREMENTS AND STATISTICAL ANALYSIS Index and/or additional lesions present in 178 participants were compared between TPM groups in terms of number, conspicuity, volume, location, and radiological characteristics. RESULTS AND LIMITATIONS Most lesions were located in the peripheral zone. More men with significant cancer had two or more lesions than those without significant disease (67% vs 37%; p< 0.001). In the former group, index lesions were larger (mean volume 0.68 vs 0.50 ml; p< 0.001, Wilcoxon test), more conspicuous (Likert 4-5: 79% vs 22%; p< 0.001), and diffusion restricted (mean apparent diffusion coefficient [ADC]: 0.73 vs 0.86; p< 0.001, Wilcoxon test). In men with Likert 3 index lesions, log2PSA density and index lesion ADC were significant predictors of definition 1/2 disease in a logistic regression model (mean cross-validated area under the receiver-operator characteristic curve: 0.77 [95% confidence interval: 0.67-0.87]). CONCLUSIONS Significant cancer-associated MRI lesions in biopsy-naïve men have clinical-radiological differences, with lesions seen in prostates without significant disease. MRI-calculated PSA density and ADC could predict significant cancer in those with indeterminate MRI phenotypes. PATIENT SUMMARY Magnetic resonance imaging (MRI) lesions that mimic prostate cancer but are, in fact, benign prompt unnecessary biopsies in thousands of men with raised prostate-specific antigen. In this study we found that, on closer look, such false positive lesions have different features from cancerous ones. This means that doctors could potentially develop better tools to identify cancer on MRI and spare some patients from unnecessary biopsies.
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Affiliation(s)
- Vasilis Stavrinides
- UCL Division of Surgery & Interventional Science, University College London, London, UK; The Alan Turing Institute, London, UK; Department of Urology, University College London Hospitals NHS Foundation Trust, London, UK.
| | - Tom Syer
- UCL Division of Surgery & Interventional Science, University College London, London, UK; Centre for Medical Imaging, University College London, London, UK
| | - Yipeng Hu
- UCL Division of Surgery & Interventional Science, University College London, London, UK; Centre for Medical Image Computing, University College London, London, UK; Wellcome EPSRC Centre for Interventional & Surgical Science (WEISS), University College London, London, UK; Department of Medical Physics & Biomedical Engineering, University College London, London, UK
| | - Francesco Giganti
- UCL Division of Surgery & Interventional Science, University College London, London, UK; Department of Radiology, University College London Hospitals NHS Foundation Trust, London, UK
| | - Alex Freeman
- Department of Pathology, University College London Hospitals NHS Foundation Trust, London, UK
| | - Solon Karapanagiotis
- The Alan Turing Institute, London, UK; Medical Research Council (MRC) Biostatistics Unit, University of Cambridge, Cambridge, UK
| | - Simon R J Bott
- Department of Urology, Frimley Health NHS Foundation Trust, London, UK
| | - Louise C Brown
- Medical Research Council (MRC) Clinical Trials Unit, University College London, London, UK
| | - Nicholas Burns-Cox
- Department of Urology, Taunton & Somerset NHS Foundation Trust, Taunton, UK
| | - Timothy J Dudderidge
- Department of Urology, University Hospital Southampton NHS Foundation Trust, Southampton, UK
| | | | - Elena Frangou
- Medical Research Council (MRC) Clinical Trials Unit, University College London, London, UK
| | - Maneesh Ghei
- Department of Urology, Whittington Health NHS Trust, London, UK
| | - Alastair Henderson
- Department of Urology, Maidstone & Tunbridge Wells NHS Trust, Tunbridge Wells, UK
| | - Richard G Hindley
- Department of Urology, Hampshire Hospitals NHS Foundation Trust, Hampshire, UK
| | - Richard S Kaplan
- Medical Research Council (MRC) Clinical Trials Unit, University College London, London, UK
| | | | - Chris Parker
- Department of Academic Urology, The Royal Marsden NHS Foundation Trust, Sutton, UK
| | - Raj Persad
- Department of Urology, North Bristol NHS Trust, Bristol, UK
| | - Derek J Rosario
- Department of Urology, Sheffield Teaching Hospitals NHS Foundation Trust, Sheffield, UK
| | - Iqbal S Shergill
- Department of Urology, Wrexham Maelor Hospital NHS Trust, Wrexham, UK
| | | | - Joseph M Norris
- UCL Division of Surgery & Interventional Science, University College London, London, UK; Department of Urology, University College London Hospitals NHS Foundation Trust, London, UK
| | - Mathias Winkler
- Department of Urology, Imperial College Healthcare NHS Trust, London, UK; Imperial Prostate, Division of Surgery, Department of Surgery & Cancer, Faculty of Medicine, Imperial College London, London, UK
| | - Dean Barratt
- UCL Division of Surgery & Interventional Science, University College London, London, UK; Centre for Medical Image Computing, University College London, London, UK; Wellcome EPSRC Centre for Interventional & Surgical Science (WEISS), University College London, London, UK; Department of Medical Physics & Biomedical Engineering, University College London, London, UK
| | - Alex Kirkham
- Department of Radiology, University College London Hospitals NHS Foundation Trust, London, UK
| | - Shonit Punwani
- UCL Division of Surgery & Interventional Science, University College London, London, UK; Centre for Medical Imaging, University College London, London, UK; Department of Radiology, University College London Hospitals NHS Foundation Trust, London, UK
| | - Hayley C Whitaker
- UCL Division of Surgery & Interventional Science, University College London, London, UK
| | - Hashim U Ahmed
- Department of Urology, Imperial College Healthcare NHS Trust, London, UK; Imperial Prostate, Division of Surgery, Department of Surgery & Cancer, Faculty of Medicine, Imperial College London, London, UK
| | - Mark Emberton
- UCL Division of Surgery & Interventional Science, University College London, London, UK; Department of Urology, University College London Hospitals NHS Foundation Trust, London, UK
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Fu Y, Lei Y, Wang T, Patel P, Jani AB, Mao H, Curran WJ, Liu T, Yang X. Biomechanically constrained non-rigid MR-TRUS prostate registration using deep learning based 3D point cloud matching. Med Image Anal 2020; 67:101845. [PMID: 33129147 DOI: 10.1016/j.media.2020.101845] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Revised: 08/17/2020] [Accepted: 08/31/2020] [Indexed: 01/04/2023]
Abstract
A non-rigid MR-TRUS image registration framework is proposed for prostate interventions. The registration framework consists of a convolutional neural networks (CNN) for MR prostate segmentation, a CNN for TRUS prostate segmentation and a point-cloud based network for rapid 3D point cloud matching. Volumetric prostate point clouds were generated from the segmented prostate masks using tetrahedron meshing. The point cloud matching network was trained using deformation field that was generated by finite element analysis. Therefore, the network implicitly models the underlying biomechanical constraint when performing point cloud matching. A total of 50 patients' datasets were used for the network training and testing. Alignment of prostate shapes after registration was evaluated using three metrics including Dice similarity coefficient (DSC), mean surface distance (MSD) and Hausdorff distance (HD). Internal point-to-point registration accuracy was assessed using target registration error (TRE). Jacobian determinant and strain tensors of the predicted deformation field were calculated to analyze the physical fidelity of the deformation field. On average, the mean and standard deviation were 0.94±0.02, 0.90±0.23 mm, 2.96±1.00 mm and 1.57±0.77 mm for DSC, MSD, HD and TRE, respectively. Robustness of our method to point cloud noise was evaluated by adding different levels of noise to the query point clouds. Our results demonstrated that the proposed method could rapidly perform MR-TRUS image registration with good registration accuracy and robustness.
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Affiliation(s)
- Yabo Fu
- Department of Radiation Oncology, Emory University, 1365 Clifton Road NE, Atlanta, GA 30322, United States
| | - Yang Lei
- Department of Radiation Oncology, Emory University, 1365 Clifton Road NE, Atlanta, GA 30322, United States
| | - Tonghe Wang
- Department of Radiation Oncology, Emory University, 1365 Clifton Road NE, Atlanta, GA 30322, United States; Winship Cancer Institute, Emory University, Atlanta, GA 30322, United States
| | - Pretesh Patel
- Department of Radiation Oncology, Emory University, 1365 Clifton Road NE, Atlanta, GA 30322, United States; Winship Cancer Institute, Emory University, Atlanta, GA 30322, United States
| | - Ashesh B Jani
- Department of Radiation Oncology, Emory University, 1365 Clifton Road NE, Atlanta, GA 30322, United States; Winship Cancer Institute, Emory University, Atlanta, GA 30322, United States
| | - Hui Mao
- Winship Cancer Institute, Emory University, Atlanta, GA 30322, United States; Department of Radiology and Imaging Sciences, Emory University, Atlanta, GA 30322, United States
| | - Walter J Curran
- Department of Radiation Oncology, Emory University, 1365 Clifton Road NE, Atlanta, GA 30322, United States; Winship Cancer Institute, Emory University, Atlanta, GA 30322, United States
| | - Tian Liu
- Department of Radiation Oncology, Emory University, 1365 Clifton Road NE, Atlanta, GA 30322, United States; Winship Cancer Institute, Emory University, Atlanta, GA 30322, United States
| | - Xiaofeng Yang
- Department of Radiation Oncology, Emory University, 1365 Clifton Road NE, Atlanta, GA 30322, United States; Winship Cancer Institute, Emory University, Atlanta, GA 30322, United States.
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Sultana S, Song DY, Lee J. Deformable registration of PET/CT and ultrasound for disease-targeted focal prostate brachytherapy. J Med Imaging (Bellingham) 2019; 6:035003. [PMID: 31528661 PMCID: PMC6739636 DOI: 10.1117/1.jmi.6.3.035003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2019] [Accepted: 08/20/2019] [Indexed: 12/27/2022] Open
Abstract
We propose a deformable registration algorithm for prostate-specific membrane antigen (PSMA) PET/CT and transrectal ultrasound (TRUS) fusion. Accurate registration of PSMA PET to intraoperative TRUS will allow physicians to customize dose planning based on the regions involved. The inputs to the registration algorithm are the PET/CT and TRUS volumes as well as the prostate segmentations. PET/CT and TRUS volumes are first rigidly registered by maximizing the overlap between the segmented prostate binary masks. Three-dimensional anatomical landmarks are then automatically extracted from the boundary as well as within the prostate. Then, a deformable registration is performed using a regularized thin plate spline where the landmark localization error is optimized between the extracted landmarks that are in correspondence. The proposed algorithm was evaluated on 25 prostate cancer patients treated with low-dose-rate brachytherapy. We registered the postimplant CT to TRUS using the proposed algorithm and computed target registration errors (TREs) by comparing implanted seed locations. Our approach outperforms state-of-the-art methods, with significantly lower ( mean ± standard deviation ) TRE of 1.96 ± 1.29 mm while being computationally efficient (mean computation time of 38 s). The proposed landmark-based PET/CT-TRUS deformable registration algorithm is simple, computationally efficient, and capable of producing quality registration of the prostate boundary as well as the internal gland.
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Affiliation(s)
- Sharmin Sultana
- Johns Hopkins University, Department of Radiation Oncology and Molecular Radiation Sciences, Baltimore, Maryland, United States
| | - Daniel Y. Song
- Johns Hopkins University, Department of Radiation Oncology and Molecular Radiation Sciences, Baltimore, Maryland, United States
| | - Junghoon Lee
- Johns Hopkins University, Department of Radiation Oncology and Molecular Radiation Sciences, Baltimore, Maryland, United States
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Magallon-Baro A, Loi M, Milder MT, Granton PV, Zolnay AG, Nuyttens JJ, Hoogeman MS. Modeling daily changes in organ-at-risk anatomy in a cohort of pancreatic cancer patients. Radiother Oncol 2019; 134:127-134. [DOI: 10.1016/j.radonc.2019.01.030] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Revised: 01/10/2019] [Accepted: 01/22/2019] [Indexed: 11/15/2022]
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14
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Sultana S, Song DY, Lee J. A deformable multimodal image registration using PET/CT and TRUS for intraoperative focal prostate brachytherapy. PROCEEDINGS OF SPIE--THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING 2019; 10951:109511I. [PMID: 32341619 PMCID: PMC7185222 DOI: 10.1117/12.2512996] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
In this paper, a deformable registration method is proposed that enables automatic alignment of preoperative PET/CT to intraoperative ultrasound in order to achieve PET-determined focal prostate brachytherapy. Novel PET imaging agents such as prostate specific membrane antigen (PSMA) enables highly accurate identification of intra/extra-prostatic tumors. Incorporation of PSMA PET into the standard transrectal ultrasound (TRUS)-guided prostate brachytherapy will enable focal therapy, thus minimizing radiation toxicities. Our registration method requires PET/CT and TRUS volume as well as prostate segmentations. These input volumes are first rigidly registered by maximizing spatial overlap between the segmented prostate volumes, followed by the deformable registration. To achieve anatomically accurate deformable registration, we extract anatomical landmarks from both prostate boundary and inside the gland. Landmarks are extracted along the base-apex axes using two approaches: equiangular and equidistance. Three-dimensional thin-plate spline (TPS)-based deformable registration is then performed using the extracted landmarks as control points. Finally, the PET/CT images are deformed to the TRUS space by using the computed TPS transformation. The proposed method was validated on 10 prostate cancer patient datasets in which we registered post-implant CT to end-of-implantation TRUS. We computed target registration errors (TREs) by comparing the implanted seed positions (transformed CT seeds vs. intraoperatively identified TRUS seeds). The average TREs of the proposed method are 1.98±1.22 mm (mean±standard deviation) and 1.97±1.24 mm for equiangular and equidistance landmark extraction methods, respectively, which is better than or comparable to existing state-of-the-art methods while being computationally more efficient with an average computation time less than 40 seconds.
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Affiliation(s)
- Sharmin Sultana
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University, Baltimore, MD, USA
| | - Daniel Y Song
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University, Baltimore, MD, USA
| | - Junghoon Lee
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University, Baltimore, MD, USA
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15
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Hu Y, Modat M, Gibson E, Li W, Ghavami N, Bonmati E, Wang G, Bandula S, Moore CM, Emberton M, Ourselin S, Noble JA, Barratt DC, Vercauteren T. Weakly-supervised convolutional neural networks for multimodal image registration. Med Image Anal 2018; 49:1-13. [PMID: 30007253 PMCID: PMC6742510 DOI: 10.1016/j.media.2018.07.002] [Citation(s) in RCA: 183] [Impact Index Per Article: 26.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2018] [Revised: 06/20/2018] [Accepted: 07/03/2018] [Indexed: 11/28/2022]
Abstract
One of the fundamental challenges in supervised learning for multimodal image registration is the lack of ground-truth for voxel-level spatial correspondence. This work describes a method to infer voxel-level transformation from higher-level correspondence information contained in anatomical labels. We argue that such labels are more reliable and practical to obtain for reference sets of image pairs than voxel-level correspondence. Typical anatomical labels of interest may include solid organs, vessels, ducts, structure boundaries and other subject-specific ad hoc landmarks. The proposed end-to-end convolutional neural network approach aims to predict displacement fields to align multiple labelled corresponding structures for individual image pairs during the training, while only unlabelled image pairs are used as the network input for inference. We highlight the versatility of the proposed strategy, for training, utilising diverse types of anatomical labels, which need not to be identifiable over all training image pairs. At inference, the resulting 3D deformable image registration algorithm runs in real-time and is fully-automated without requiring any anatomical labels or initialisation. Several network architecture variants are compared for registering T2-weighted magnetic resonance images and 3D transrectal ultrasound images from prostate cancer patients. A median target registration error of 3.6 mm on landmark centroids and a median Dice of 0.87 on prostate glands are achieved from cross-validation experiments, in which 108 pairs of multimodal images from 76 patients were tested with high-quality anatomical labels.
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Affiliation(s)
- Yipeng Hu
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, UK.
| | - Marc Modat
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Wellcome / EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK
| | - Eli Gibson
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK
| | - Wenqi Li
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Wellcome / EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK
| | - Nooshin Ghavami
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK
| | - Ester Bonmati
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK
| | - Guotai Wang
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Wellcome / EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK
| | - Steven Bandula
- Centre for Medical Imaging, University College London, London, UK
| | - Caroline M Moore
- Division of Surgery and Interventional Science, University College London, London, UK
| | - Mark Emberton
- Division of Surgery and Interventional Science, University College London, London, UK
| | - Sébastien Ourselin
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Wellcome / EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK
| | - J Alison Noble
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, UK
| | - Dean C Barratt
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Wellcome / EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK
| | - Tom Vercauteren
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Wellcome / EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK
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Samei G, Goksel O, Lobo J, Mohareri O, Black P, Rohling R, Salcudean S. Real-Time FEM-Based Registration of 3-D to 2.5-D Transrectal Ultrasound Images. IEEE TRANSACTIONS ON MEDICAL IMAGING 2018; 37:1877-1886. [PMID: 29994583 DOI: 10.1109/tmi.2018.2810778] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We present a novel technique for real-time deformable registration of 3-D to 2.5-D transrectal ultrasound (TRUS) images for image-guided, robot-assisted laparoscopic radical prostatectomy (RALRP). For RALRP, a pre-operatively acquired 3-D TRUS image is registered to thin-volumes comprised of consecutive intra-operative 2-D TRUS images, where the optimal transformation is found using a gradient descent method based on analytical first and second order derivatives. Our method relies on an efficient algorithm for real-time extraction of arbitrary slices from a 3-D image deformed given a discrete mesh representation. We also propose and demonstrate an evaluation method that generates simulated models and images for RALRP by modeling tissue deformation through patient-specific finite-element models (FEM). We evaluated our method on in-vivo data from 11 patients collected during RALRP and focal therapy interventions. In the presence of an average landmark deformation of 3.89 and 4.62 mm, we achieved accuracies of 1.15 and 0.72 mm, respectively, on the synthetic and in-vivo data sets, with an average registration computation time of 264 ms, using MATLAB on a conventional PC. The results show that the real-time tracking of the prostate motion and deformation is feasible, enabling a real-time augmented reality-based guidance system for RALRP.].
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17
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Wang Y, Zheng Q, Heng PA. Online Robust Projective Dictionary Learning: Shape Modeling for MR-TRUS Registration. IEEE TRANSACTIONS ON MEDICAL IMAGING 2018; 37:1067-1078. [PMID: 29610082 DOI: 10.1109/tmi.2017.2777870] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Robust and effective shape prior modeling from a set of training data remains a challenging task, since the shape variation is complicated, and shape models should preserve local details as well as handle shape noises. To address these challenges, a novel robust projective dictionary learning (RPDL) scheme is proposed in this paper. Specifically, the RPDL method integrates the dimension reduction and dictionary learning into a unified framework for shape prior modeling, which can not only learn a robust and representative dictionary with the energy preservation of the training data, but also reduce the dimensionality and computational cost via the subspace learning. In addition, the proposed RPDL algorithm is regularized by using the norm to handle the outliers and noises, and is embedded in an online framework so that of memory and time efficiency. The proposed method is employed to model prostate shape prior for the application of magnetic resonance transrectal ultrasound registration. The experimental results demonstrate that our method provides more accurate and robust shape modeling than the state-of-the-art methods do. The proposed RPDL method is applicable for modeling other organs, and hence, a general solution for the problem of shape prior modeling.
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18
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Bonmati E, Hu Y, Villarini B, Rodell R, Martin P, Han L, Donaldson I, Ahmed HU, Moore CM, Emberton M, Barratt DC. Technical Note: Error metrics for estimating the accuracy of needle/instrument placement during transperineal magnetic resonance/ultrasound-guided prostate interventions. Med Phys 2018; 45:1408-1414. [PMID: 29443386 DOI: 10.1002/mp.12814] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Revised: 12/13/2017] [Accepted: 02/03/2018] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Image-guided systems that fuse magnetic resonance imaging (MRI) with three-dimensional (3D) ultrasound (US) images for performing targeted prostate needle biopsy and minimally invasive treatments for prostate cancer are of increasing clinical interest. To date, a wide range of different accuracy estimation procedures and error metrics have been reported, which makes comparing the performance of different systems difficult. METHODS A set of nine measures are presented to assess the accuracy of MRI-US image registration, needle positioning, needle guidance, and overall system error, with the aim of providing a methodology for estimating the accuracy of instrument placement using a MR/US-guided transperineal approach. RESULTS Using the SmartTarget fusion system, an MRI-US image alignment error was determined to be 2.0 ± 1.0 mm (mean ± SD), and an overall system instrument targeting error of 3.0 ± 1.2 mm. Three needle deployments for each target phantom lesion was found to result in a 100% lesion hit rate and a median predicted cancer core length of 5.2 mm. CONCLUSIONS The application of a comprehensive, unbiased validation assessment for MR/US guided systems can provide useful information on system performance for quality assurance and system comparison. Furthermore, such an analysis can be helpful in identifying relationships between these errors, providing insight into the technical behavior of these systems.
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Affiliation(s)
- Ester Bonmati
- Department of Medical Physics & Biomedical Engineering, UCL Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT, UK
| | - Yipeng Hu
- Department of Medical Physics & Biomedical Engineering, UCL Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT, UK
| | - Barbara Villarini
- Department of Medical Physics & Biomedical Engineering, UCL Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT, UK.,Department of Computer Science, University of Westminster, 115 New Cavendish Street, London, W1W 6UW, UK
| | - Rachael Rodell
- Department of Medical Physics & Biomedical Engineering, UCL Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT, UK
| | - Paul Martin
- Department of Medical Physics & Biomedical Engineering, UCL Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT, UK
| | - Lianghao Han
- Department of Medical Physics & Biomedical Engineering, UCL Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT, UK.,School of Medicine, Shanghai East Hospital, Tongji University, 1239 Siping Road, Shanghai, China
| | - Ian Donaldson
- Division of Surgery and Interventional Science, University College London, UCL Medical School Building, 21 University Street, London, WC1E 6AU, UK
| | - Hashim U Ahmed
- Division of Surgery and Interventional Science, University College London, UCL Medical School Building, 21 University Street, London, WC1E 6AU, UK.,Division of Surgery, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London, Charing Cross Hospital Campus, Fulham Palace Road, London, W6 8RF, UK.,Imperial Urology, Charing Cross Hospital, Imperial College Healthcare NHS Trust, Imperial College London, Charing Cross Hospital Campus, Fulham Palace Road, London, W6 8RF, UK
| | - Caroline M Moore
- Division of Surgery and Interventional Science, University College London, UCL Medical School Building, 21 University Street, London, WC1E 6AU, UK
| | - Mark Emberton
- Division of Surgery and Interventional Science, University College London, UCL Medical School Building, 21 University Street, London, WC1E 6AU, UK
| | - Dean C Barratt
- Department of Medical Physics & Biomedical Engineering, UCL Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT, UK
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19
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20
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Onofrey JA, Staib LH, Sarkar S, Venkataraman R, Nawaf CB, Sprenkle PC, Papademetris X. Learning Non-rigid Deformations for Robust, Constrained Point-based Registration in Image-Guided MR-TRUS Prostate Intervention. Med Image Anal 2017; 39:29-43. [PMID: 28431275 DOI: 10.1016/j.media.2017.04.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2016] [Revised: 02/28/2017] [Accepted: 04/03/2017] [Indexed: 01/13/2023]
Abstract
Accurate and robust non-rigid registration of pre-procedure magnetic resonance (MR) imaging to intra-procedure trans-rectal ultrasound (TRUS) is critical for image-guided biopsies of prostate cancer. Prostate cancer is one of the most prevalent forms of cancer and the second leading cause of cancer-related death in men in the United States. TRUS-guided biopsy is the current clinical standard for prostate cancer diagnosis and assessment. State-of-the-art, clinical MR-TRUS image fusion relies upon semi-automated segmentations of the prostate in both the MR and the TRUS images to perform non-rigid surface-based registration of the gland. Segmentation of the prostate in TRUS imaging is itself a challenging task and prone to high variability. These segmentation errors can lead to poor registration and subsequently poor localization of biopsy targets, which may result in false-negative cancer detection. In this paper, we present a non-rigid surface registration approach to MR-TRUS fusion based on a statistical deformation model (SDM) of intra-procedural deformations derived from clinical training data. Synthetic validation experiments quantifying registration volume of interest overlaps of the PI-RADS parcellation standard and tests using clinical landmark data demonstrate that our use of an SDM for registration, with median target registration error of 2.98 mm, is significantly more accurate than the current clinical method. Furthermore, we show that the low-dimensional SDM registration results are robust to segmentation errors that are not uncommon in clinical TRUS data.
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Affiliation(s)
| | - Lawrence H Staib
- Department of Radiology & Biomedical Imaging, USA; Department of Electrical Engineering, USA; Department of Biomedical Engineering, USA.
| | | | | | - Cayce B Nawaf
- Department of Urology, Yale University, New Haven, Connecticut, USA.
| | | | - Xenophon Papademetris
- Department of Radiology & Biomedical Imaging, USA; Department of Biomedical Engineering, USA.
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21
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Hu Y, Kasivisvanathan V, Simmons LAM, Clarkson MJ, Thompson SA, Shah TT, Ahmed HU, Punwani S, Hawkes DJ, Emberton M, Moore CM, Barratt DC. Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy. IEEE Trans Biomed Eng 2017; 64:946-958. [PMID: 27337710 PMCID: PMC5053368 DOI: 10.1109/tbme.2016.2582734] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
OBJECTIVE Three- and four-dimensional transrectal ultrasound transducers are now available from most major ultrasound equipment manufacturers, but currently are incorporated into only one commercial prostate biopsy guidance system. Such transducers offer the benefits of rapid volumetric imaging, but can cause substantial measurement distortion in electromagnetic tracking sensors, which are commonly used to enable 3-D navigation. In this paper, we describe the design, development, and validation of a 3-D-ultrasound-guided transrectal prostate biopsy system that employs high-accuracy optical tracking to localize the ultrasound probe and prostate targets in 3-D physical space. METHODS The accuracy of the system was validated by evaluating the targeted needle placement error after inserting a biopsy needle to sample planned targets in a phantom using standard 2-D ultrasound guidance versus real-time 3-D guidance provided by the new system. RESULTS The overall mean needle-segment-to-target distance error was 3.6 ± 4.0 mm and mean needle-to-target distance was 3.2 ± 2.4 mm. CONCLUSION A significant increase in needle placement accuracy was observed when using the 3-D guidance system compared with visual targeting of invisible (virtual) lesions using a standard B-mode ultrasound-guided biopsy technique.
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22
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Rios R, De Crevoisier R, Ospina JD, Commandeur F, Lafond C, Simon A, Haigron P, Espinosa J, Acosta O. Population model of bladder motion and deformation based on dominant eigenmodes and mixed-effects models in prostate cancer radiotherapy. Med Image Anal 2017; 38:133-149. [PMID: 28343079 DOI: 10.1016/j.media.2017.03.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Revised: 02/27/2017] [Accepted: 03/07/2017] [Indexed: 10/20/2022]
Abstract
In radiotherapy for prostate cancer irradiation of neighboring organs at risk may lead to undesirable side-effects. Given this setting, the bladder presents the largest inter-fraction shape variations hampering the computation of the actual delivered dose vs. planned dose. This paper proposes a population model, based on longitudinal data, able to estimate the probability of bladder presence during treatment, using only the planning computed tomography (CT) scan as input information. As in previously-proposed principal component analysis (PCA) population-based models, we have used the data to obtain the dominant eigenmodes that describe bladder geometric variations between fractions. However, we have used a longitudinal analysis along each mode in order to properly characterize patient's variance from the total population variance. We have proposed is a mixed-effects (ME) model in order to separate intra- and inter-patient variability, in an effort to control confounding cohort effects. Other than using PCA, bladder shapes are represented by using spherical harmonics (SPHARM) that additionally enables data compression without information lost. Based on training data from repeated CT scans, the ME model was thus implemented following dimensionality reduction by means of SPHARM and PCA. We have evaluated the model in a leave-one-out cross validation framework on the training data but also using independent data. Probability maps (PMs) were thus generated with several draws from the learnt model as predicted regions where the bladder will likely move and deform. These PMs were compared with the actual regions using metrics based on mutual information distance and misestimated voxels. The prediction was also compared with two previous population PCA-based models. The proposed model was able to reduce the uncertainties in the estimation of the probable region of bladder motion and deformation. This model can thus be used for tailoring radiotherapy treatments.
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Affiliation(s)
- Richard Rios
- INSERM, U1099, F-35000 Rennes, France; Université de Rennes 1, LTSI, F-35000 Rennes, France; Universidad Nacional de Colombia, Facultad de Minas, GAUNAL, Medellín, Colombia.
| | - Renaud De Crevoisier
- INSERM, U1099, F-35000 Rennes, France; Université de Rennes 1, LTSI, F-35000 Rennes, France; CRLCC Eugène Marquis, Département de Radiothérapie, F-35000 Rennes, France
| | - Juan D Ospina
- INSERM, U1099, F-35000 Rennes, France; Université de Rennes 1, LTSI, F-35000 Rennes, France
| | - Frederic Commandeur
- INSERM, U1099, F-35000 Rennes, France; Université de Rennes 1, LTSI, F-35000 Rennes, France
| | - Caroline Lafond
- CRLCC Eugène Marquis, Département de Radiothérapie, F-35000 Rennes, France
| | - Antoine Simon
- INSERM, U1099, F-35000 Rennes, France; Université de Rennes 1, LTSI, F-35000 Rennes, France
| | - Pascal Haigron
- INSERM, U1099, F-35000 Rennes, France; Université de Rennes 1, LTSI, F-35000 Rennes, France
| | - Jairo Espinosa
- Universidad Nacional de Colombia, Facultad de Minas, GAUNAL, Medellín, Colombia
| | - Oscar Acosta
- INSERM, U1099, F-35000 Rennes, France; Université de Rennes 1, LTSI, F-35000 Rennes, France
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Ménard C, Pambrun JF, Kadoury S. The utilization of magnetic resonance imaging in the operating room. Brachytherapy 2017; 16:754-760. [PMID: 28139421 DOI: 10.1016/j.brachy.2016.12.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Revised: 12/12/2016] [Accepted: 12/12/2016] [Indexed: 11/26/2022]
Abstract
Online image guidance in the operating room using ultrasound imaging led to the resurgence of prostate brachytherapy in the 1980s. Here we describe the evolution of integrating MRI technology in the brachytherapy suite or operating room. Given the complexity, cost, and inherent safety issues associated with MRI system integration, first steps focused on the computational integration of images rather than systems. This approach has broad appeal given minimal infrastructure costs and efficiencies comparable with standard care workflows. However, many concerns remain regarding accuracy of registration through the course of a brachytherapy procedure. In selected academic institutions, MRI systems have been integrated in or near the brachytherapy suite in varied configurations to improve the precision and quality of treatments. Navigation toolsets specifically adapted to prostate brachytherapy are in development and are reviewed.
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Affiliation(s)
- C Ménard
- University of Montréal Hospital Research Centre (CRCHUM), Montréal, QC, Canada; TECHNA Institute, University of Toronto, Toronto, ON, Canada; Princess Margaret Cancer Center, Toronto, ON, Canada.
| | - J-F Pambrun
- University of Montréal Hospital Research Centre (CRCHUM), Montréal, QC, Canada; École polytechnique de Montréal, Montréal, QC, Canada
| | - S Kadoury
- University of Montréal Hospital Research Centre (CRCHUM), Montréal, QC, Canada; École polytechnique de Montréal, Montréal, QC, Canada
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Moldovan P, Udrescu C, Ravier E, Souchon R, Rabilloud M, Bratan F, Sanzalone T, Cros F, Crouzet S, Gelet A, Chapet O, Rouvière O. Accuracy of Elastic Fusion of Prostate Magnetic Resonance and Transrectal Ultrasound Images under Routine Conditions: A Prospective Multi-Operator Study. PLoS One 2016; 11:e0169120. [PMID: 28033423 PMCID: PMC5199076 DOI: 10.1371/journal.pone.0169120] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2016] [Accepted: 12/12/2016] [Indexed: 12/27/2022] Open
Abstract
Purpose To evaluate in unselected patients imaged under routine conditions the co-registration accuracy of elastic fusion between magnetic resonance (MR) and ultrasound (US) images obtained by the Koelis Urostation™. Materials and Methods We prospectively included 15 consecutive patients referred for placement of intraprostatic fiducials before radiotherapy and who gave written informed consent by signing the Institutional Review Board-approved forms. Three fiducials were placed in the prostate under US guidance in standardized positions (right apex, left mid-gland, right base) using the Koelis Urostation™. Patients then underwent prostate MR imaging. Four operators outlined the prostate on MR and US images and an elastic fusion was retrospectively performed. Fiducials were used to measure the overall target registration error (TRE3D), the error along the antero-posterior (TREAP), right-left (TRERL) and head-feet (TREHF) directions, and within the plane orthogonal to the virtual biopsy track (TRE2D). Results Median TRE3D and TRE2D were 3.8–5.6 mm, and 2.5–3.6 mm, respectively. TRE3D was significantly influenced by the operator (p = 0.013), fiducial location (p = 0.001) and 3D axis orientation (p<0.0001). The worst results were obtained by the least experienced operator. TRE3D was smaller in mid-gland and base than in apex (average difference: -1.21 mm (95% confidence interval (95%CI): -2.03; -0.4) and -1.56 mm (95%CI: -2.44; -0.69) respectively). TREAP and TREHF were larger than TRERL (average difference: +1.29 mm (95%CI: +0.87; +1.71) and +0.59 mm (95%CI: +0.1; +0.95) respectively). Conclusions Registration error values were reasonable for clinical practice. The co-registration accuracy was significantly influenced by the operator’s experience, and significantly poorer in the antero-posterior direction and at the apex.
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Affiliation(s)
- Paul Moldovan
- Hospices Civils de Lyon, Department of Urinary and Vascular Radiology, Hôpital Edouard Herriot, Lyon, France
| | - Corina Udrescu
- Hospices Civils de Lyon, Department of Radiation Oncology, Centre Hospitalier Lyon-Sud, Pierre-Bénite, France
| | - Emmanuel Ravier
- Hospices Civils de Lyon, Department of Urology, Hôpital Edouard Herriot, Lyon, France
| | | | - Muriel Rabilloud
- Hospices Civils de Lyon, Service de Biostatistique et Bioinformatique, Lyon, France
- Université de Lyon, Lyon, France
- CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, Equipe Biostatistique-Santé, Villeurbanne, France
| | - Flavie Bratan
- Hospices Civils de Lyon, Department of Urinary and Vascular Radiology, Hôpital Edouard Herriot, Lyon, France
| | - Thomas Sanzalone
- Hospices Civils de Lyon, Department of Urinary and Vascular Radiology, Hôpital Edouard Herriot, Lyon, France
| | - Fanny Cros
- Hospices Civils de Lyon, Department of Urinary and Vascular Radiology, Hôpital Edouard Herriot, Lyon, France
| | - Sébastien Crouzet
- Hospices Civils de Lyon, Department of Urology, Hôpital Edouard Herriot, Lyon, France
- Inserm, U1032, LabTau, Lyon, France
- Université de Lyon, Lyon, France
| | - Albert Gelet
- Hospices Civils de Lyon, Department of Urology, Hôpital Edouard Herriot, Lyon, France
- Inserm, U1032, LabTau, Lyon, France
- Université de Lyon, Lyon, France
| | - Olivier Chapet
- Hospices Civils de Lyon, Department of Radiation Oncology, Centre Hospitalier Lyon-Sud, Pierre-Bénite, France
| | - Olivier Rouvière
- Hospices Civils de Lyon, Department of Urinary and Vascular Radiology, Hôpital Edouard Herriot, Lyon, France
- Inserm, U1032, LabTau, Lyon, France
- Université de Lyon, Lyon, France
- * E-mail:
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25
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Ouzzane A, Betrouni N, Valerio M, Rastinehad A, Colin P, Ploussard G. Focal therapy as primary treatment for localized prostate cancer: definition, needs and future. Future Oncol 2016; 13:727-741. [PMID: 27882770 DOI: 10.2217/fon-2016-0229] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Focal therapy (FT) may offer a promising treatment option in the field of low to intermediate risk localized prostate cancer. The aim of this concept is to combine minimal morbidity with cancer control as well as maintain the possibility of retreatment. Recent advances in MRI and targeted biopsy has improved the diagnostic pathway of prostate cancer and increased the interest in FT. However, before implementation of FT in routine clinical practice, several challenges are still to overcome including patient selection, treatment planning, post-therapy monitoring and definition of oncologic outcome surrogates. In this article, relevant questions regarding the key steps of FT are critically discussed and the main available energy modalities are analyzed taking into account their advantages and unmet needs.
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Affiliation(s)
- Adil Ouzzane
- Department of Urology, CHRU de Lille, Hôpital Claude Huriez, F-59037 Lille, France.,NSERM, U1189, ONCO-THAI, F-59037 Lille, France
| | | | - Massimo Valerio
- Department of Urology, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland
| | | | - Pierre Colin
- Department of Urology, Hôpital Privé de la Louvière, Ramsay Générale de Santé, 59000 Lille, France
| | - Guillaume Ploussard
- Institut universitaire du Cancer de Toulouse - Oncopole, Toulouse, France.,Department of Urology, Saint-Jean Languedoc Hospital, Toulouse, France
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26
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Hawkes DJ. From clinical imaging and computational models to personalised medicine and image guided interventions. Med Image Anal 2016; 33:50-55. [PMID: 27407003 DOI: 10.1016/j.media.2016.06.022] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2016] [Revised: 06/10/2016] [Accepted: 06/15/2016] [Indexed: 11/25/2022]
Abstract
This short paper describes the development of the UCL Centre for Medical Image Computing (CMIC) from 2006 to 2016, together with reference to historical developments of the Computational Imaging sciences Group (CISG) at Guy's Hospital. Key early work in automated image registration led to developments in image guided surgery and improved cancer diagnosis and therapy. The work is illustrated with examples from neurosurgery, laparoscopic liver and gastric surgery, diagnosis and treatment of prostate cancer and breast cancer, and image guided radiotherapy for lung cancer.
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Affiliation(s)
- David J Hawkes
- Centre for Medical Image Computing, UCL, London, UK, WC1E 6BT, United Kingdom.
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27
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Alison Noble J. Reflections on ultrasound image analysis. Med Image Anal 2016; 33:33-37. [PMID: 27503078 DOI: 10.1016/j.media.2016.06.015] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Revised: 06/07/2016] [Accepted: 06/13/2016] [Indexed: 10/21/2022]
Abstract
Ultrasound (US) image analysis has advanced considerably in twenty years. Progress in ultrasound image analysis has always been fundamental to the advancement of image-guided interventions research due to the real-time acquisition capability of ultrasound and this has remained true over the two decades. But in quantitative ultrasound image analysis - which takes US images and turns them into more meaningful clinical information - thinking has perhaps more fundamentally changed. From roots as a poor cousin to Computed Tomography (CT) and Magnetic Resonance (MR) image analysis, both of which have richer anatomical definition and thus were better suited to the earlier eras of medical image analysis which were dominated by model-based methods, ultrasound image analysis has now entered an exciting new era, assisted by advances in machine learning and the growing clinical and commercial interest in employing low-cost portable ultrasound devices outside traditional hospital-based clinical settings. This short article provides a perspective on this change, and highlights some challenges ahead and potential opportunities in ultrasound image analysis which may both have high impact on healthcare delivery worldwide in the future but may also, perhaps, take the subject further away from CT and MR image analysis research with time.
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Affiliation(s)
- J Alison Noble
- Institute of Biomedical Engineering, University of Oxford, United Kingdom.
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