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Ramakrishnan MA, Pundkar CY, Fayaz A, ChandraSekar S, Mageswary R, Ashokkumar D, Bano R, Muthuchelvan D, Nandi S, Gupta VK. Differentiation of bovine herpesvirus1 subtypes based on UL0.5 gene sequencing. Virusdisease 2018; 29:106-108. [PMID: 29607367 DOI: 10.1007/s13337-018-0422-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2017] [Accepted: 01/10/2018] [Indexed: 11/24/2022] Open
Abstract
Infectious bovine rhinotracheitis/infectious pustular vulvovaginitis is one of the high economic importance diseases of cattle and caused by bovine herpesvirus1 (BoHV1). Based on the restriction endonuclease fingerprinting of viral DNA, the BoHV1 can be divided into three subtypes viz., BoHV1.1, 1.2a, and 1.2b. Since this method requires a pure viral DNA, it is time-consuming and labour intense. In the current study, the UL0.5 gene based PCR sequencing has been used for the subtyping of BoHV1. Out of five isolates, four had BoHV1-like signatures and one isolate had BoHV1.2-like signatures. Further, these viruses phylogenetically clustered under the respective subtypes. These results indicate that the UL 0.5 gene based PCR sequencing could be used as an alternate method of subtyping of BoHV1.
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Affiliation(s)
- Muthannan A Ramakrishnan
- 1Division of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar, Uttarakhand 263 138 India
| | - Chetan Y Pundkar
- 1Division of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar, Uttarakhand 263 138 India
| | - Arfa Fayaz
- 1Division of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar, Uttarakhand 263 138 India
| | - S ChandraSekar
- 1Division of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar, Uttarakhand 263 138 India
| | - R Mageswary
- 1Division of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar, Uttarakhand 263 138 India
| | - Deenanath Ashokkumar
- 1Division of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar, Uttarakhand 263 138 India
| | - Rukhsana Bano
- 1Division of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar, Uttarakhand 263 138 India
| | - Dhanavelu Muthuchelvan
- 1Division of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar, Uttarakhand 263 138 India
| | - Sukdeb Nandi
- 2Centre for Animal Disease Research and Diagnosis, ICAR-Indian Veterinary Research Institute, Izatnagar, Uttar Pradesh 243 122 India
| | - V K Gupta
- 2Centre for Animal Disease Research and Diagnosis, ICAR-Indian Veterinary Research Institute, Izatnagar, Uttar Pradesh 243 122 India
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Yuan XQ, Zhang DY, Yan H, Yang YL, Zhu KW, Chen YH, Li X, Yin JY, Li XL, Zeng H, Chen XP. Evaluation of DNMT3A genetic polymorphisms as outcome predictors in AML patients. Oncotarget 2016; 7:60555-60574. [PMID: 27528035 PMCID: PMC5312402 DOI: 10.18632/oncotarget.11143] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2016] [Accepted: 07/26/2016] [Indexed: 12/15/2022] Open
Abstract
DNMT3A mutation is known as a recurrent event in acute myelogenous leukemia (AML) patients. However, association between DNMT3A genetic polymorphisms and AML patients' outcomes is unknown. DNMT3A 11 SNPs (rs11695471, rs2289195, rs734693, rs2276598, rs1465825, rs7590760, rs13401241, rs7581217, rs749131, rs41284843 and rs7560488) were genotyped in 344 diagnostic non-FAB-M3 AML patients from southern China. Patients underwent combined chemotherapy with cytarabine and anthracyclines. DNMT3A mRNA expression was analyzed in PBMCs from randomly selected AML patients. Multivariate analysis and combined genotype analysis showed that rs2276598 was associated with increased while rs11695471 and rs734693 were associated with decreased chemosensitivity (P<0.05), while rs11695471 (worse for OS), rs2289195 (favorable for OS and DFS) and rs2276598 (favorable for DFS) were significantly associated with disease prognosis (P<0.05). In conclusion, DNMT3A polymorphisms may be potential predictive markers for AML patients' outcomes, which might improve prognostic stratification of AML.
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Affiliation(s)
- Xiao-Qing Yuan
- Department of Clinical Pharmacology, Xiangya Hospital, Central South University, Changsha 410008, P. R. China
- Institute of Clinical Pharmacology, Central South University, Hunan Key Laboratory of Pharmacogenetics, Changsha 410078, P. R. China
| | - Dao-Yu Zhang
- Department of Clinical Pharmacology, Xiangya Hospital, Central South University, Changsha 410008, P. R. China
- Institute of Clinical Pharmacology, Central South University, Hunan Key Laboratory of Pharmacogenetics, Changsha 410078, P. R. China
| | - Han Yan
- Department of Clinical Pharmacology, Xiangya Hospital, Central South University, Changsha 410008, P. R. China
- Institute of Clinical Pharmacology, Central South University, Hunan Key Laboratory of Pharmacogenetics, Changsha 410078, P. R. China
| | - Yong-Long Yang
- Department of Pharmacy, Haikou People's Hospital and Affiliated Haikou Hospital of Xiangya Medical School, Central South University, Haikou 570311, P. R. China
| | - Ke-Wei Zhu
- Department of Clinical Pharmacology, Xiangya Hospital, Central South University, Changsha 410008, P. R. China
- Institute of Clinical Pharmacology, Central South University, Hunan Key Laboratory of Pharmacogenetics, Changsha 410078, P. R. China
| | - Yan-Hong Chen
- Department of Clinical Pharmacology, Xiangya Hospital, Central South University, Changsha 410008, P. R. China
- Institute of Clinical Pharmacology, Central South University, Hunan Key Laboratory of Pharmacogenetics, Changsha 410078, P. R. China
| | - Xi Li
- Department of Clinical Pharmacology, Xiangya Hospital, Central South University, Changsha 410008, P. R. China
- Institute of Clinical Pharmacology, Central South University, Hunan Key Laboratory of Pharmacogenetics, Changsha 410078, P. R. China
| | - Ji-Ye Yin
- Department of Clinical Pharmacology, Xiangya Hospital, Central South University, Changsha 410008, P. R. China
- Institute of Clinical Pharmacology, Central South University, Hunan Key Laboratory of Pharmacogenetics, Changsha 410078, P. R. China
| | - Xiao-Lin Li
- Department of Hematology, Xiangya Hospital, Central South University, Changsha 410008, P. R. China
| | - Hui Zeng
- Department of Hematology, Xiangya Hospital, Central South University, Changsha 410008, P. R. China
| | - Xiao-Ping Chen
- Department of Clinical Pharmacology, Xiangya Hospital, Central South University, Changsha 410008, P. R. China
- Institute of Clinical Pharmacology, Central South University, Hunan Key Laboratory of Pharmacogenetics, Changsha 410078, P. R. China
- Hunan Province Cooperation Innovation Center for Molecular Target New Drug Study, Hengyang 421001, P. R. China
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Fusco G, Amoroso MG, Aprea G, Veneziano V, Guarino A, Galiero G, Viscardi M. First report of natural BoHV-1 infection in water buffalo. Vet Rec 2015. [PMID: 26198212 DOI: 10.1136/vr.103139] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Affiliation(s)
- G Fusco
- Department of Animal Health, Experimental Zooprophylactic Institute of Southern Italy, Via Salute, 2, Portici NA 80055, Italy
| | - M G Amoroso
- Department of Animal Health, Experimental Zooprophylactic Institute of Southern Italy, Via Salute, 2, Portici NA 80055, Italy
| | - G Aprea
- Department of Food Hygiene and Technology, Experimental Zooprophylactic Institute of Abruzzo and Molise 'G. Caporale', via Campo Boario, Teramo 64100, Italy
| | - V Veneziano
- Department of Pathology and Animal Health, University of Naples 'Federico II', Via Delpino, 1, Naples 80137, Italy
| | - A Guarino
- Department of Animal Health, Experimental Zooprophylactic Institute of Southern Italy, Via Salute, 2, Portici NA 80055, Italy
| | - G Galiero
- Department of Animal Health, Experimental Zooprophylactic Institute of Southern Italy, Via Salute, 2, Portici NA 80055, Italy
| | - M Viscardi
- Department of Animal Health, Experimental Zooprophylactic Institute of Southern Italy, Via Salute, 2, Portici NA 80055, Italy
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