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Takagui FH, Viana P, Baumgärtner L, Bitencourt JA, Margarido VP, Lui RL, Feldberg E, Birindelli JLO, Almeida FS, Giuliano-Caetano L. Reconstruction of the Doradinae (Siluriformes-Doradidae) ancestral diploid number and NOR pattern reveals new insights about the karyotypic diversification of the Neotropical thorny catfishes. Genet Mol Biol 2021; 44:e20200068. [PMID: 34821336 PMCID: PMC8612126 DOI: 10.1590/1678-4685-gmb-2020-0068] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Accepted: 04/04/2021] [Indexed: 11/23/2022] Open
Abstract
Doradinae (Siluriformes: Doradidae) is the most species-rich subfamily among
thorny catfishes, encompassing over 77 valid species, found mainly in Amazon and
Platina hydrographic basins. Here, we analyzed seven Doradinae species using
combined methods (e.g., cytogenetic tools and Mesquite ancestral reconstruction
software) in order to scrutinize the processes that mediated the karyotype
diversification in this subfamily. Our ancestral reconstruction recovered that
2n=58 chromosomes and simple nucleolar organizer regions (NOR) are ancestral
features only for Wertheimerinae and the most clades of Doradinae. Some
exceptions were found in Trachydoras paraguayensis (2n=56),
Trachydoras steindachneri (2n=60), Ossancora
punctata (2n=66) and Platydoras hancockii whose
karyotypes showed a multiple NOR system. The large thorny catfishes, such as
Pterodoras granulosus, Oxydoras niger and
Centrodoras brachiatus share several karyotype features,
with subtle variations only regarding their heterochromatin distribution. On the
other hand, a remarkable karyotypic variability has been reported in the
fimbriate barbells thorny catfishes. These two contrasting karyoevolution
trajectories emerged from a complex interaction between chromosome
rearrangements (e.g., inversions and Robertsonian translocations) and mechanisms
of heterochromatin dispersion. Moreover, we believe that biological features,
such as microhabitats preferences, populational size, low vagility and migratory
behavior played a key role during the origin and maintenance of chromosome
diversity in Doradinae subfamily.
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Affiliation(s)
- Fábio H Takagui
- Universidade Estadual de Londrina, Departamento de Biologia Geral, Laboratório de Citogenética Animal, Londrina, PR, Brazil
| | - Patrik Viana
- Instituto Nacional de Pesquisas da Amazônia, Laboratório de Genética Animal, Manaus, AM, Brazil
| | - Lucas Baumgärtner
- Universidade Estadual do Oeste do Paraná, Centro de Ciências Biológicas e da Saúde, Laboratório de Citogenética, Cascavel, PR, Brazil
| | - Jamille A Bitencourt
- Universidade Estadual do Sudoeste da Bahia, Departamento de Ciências Biológicas, Laboratório de Citogenética, Jequié, BA, Brazil
| | - Vladimir Pavan Margarido
- Universidade Estadual do Oeste do Paraná, Centro de Ciências Biológicas e da Saúde, Laboratório de Citogenética, Cascavel, PR, Brazil
| | - Roberto Laridondo Lui
- Universidade Estadual do Oeste do Paraná, Centro de Ciências Biológicas e da Saúde, Laboratório de Citogenética, Cascavel, PR, Brazil
| | - Eliana Feldberg
- Instituto Nacional de Pesquisas da Amazônia, Laboratório de Genética Animal, Manaus, AM, Brazil
| | - Jose Luis Olivan Birindelli
- Universidade Estadual de Londrina, Departamento de Biologia Animal e Vegetal, Museu de Zoologia, Londrina, PR, Brazil
| | - Fernanda Simões Almeida
- Universidade Estadual de Londrina, Departamento de Biologia Geral, Laboratório de Genética e Ecologia Animal, Londrina, PR, Brazil
| | - Lucia Giuliano-Caetano
- Universidade Estadual de Londrina, Departamento de Biologia Geral, Laboratório de Citogenética Animal, Londrina, PR, Brazil
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Santos DPD, Felicetti D, Baumgärtner L, Margarido VP, Blanco DR, Moreira-Filho O, Lui RL. Contributions to the taxonomy of Trachelyopterus (Siluriformes): comparative cytogenetic analysis in three species of Auchenipteridae. NEOTROPICAL ICHTHYOLOGY 2021. [DOI: 10.1590/1982-0224-2020-0115] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT Auchenipteridae is divided into subfamilies Centromochlinae and Auchenipterinae. Parauchenipterus is included in the latter and is subject of taxonomic discussions concerning its validation or synonymization with Trachelyopterus. Herein, three species from two hydrographic basins were cytogenetically analyzed: Parauchenipterus striatulus from Doce River and two sympatric species, P. galeatus and Trachelyopterus coriaceus, from the Araguaia River. Diploid number of 58 chromosomes was verified for all species, but P. striatulus has different karyotype formula from the others. The three species have heterochromatin located in terminal regions of almost all chromosomes and in pericentromeric region on acrocentric chromosomes. Simple NORs was verified on a subtelocentric chromosome for all species. 5S rDNA sites were detected in three submetacentric chromosome pairs in P. striatulus; in a metacentric chromosome pair and submetacentric pair in T. coriaceus; and in one metacentric chromosome pair in P. galeatus. The similarities found in the karyotypes of the three species suggest the existence of only one genus, Trachelyopterus; therefore, our data refutes the validation of Parauchenipterus. Moreover, the differences in 5S rDNA distribution in P. galeatus in comparison with other populations already studied, indicate the existence of a new taxonomic unit, which suggests a species complex in P. galeatus.
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Latitudinal Cline in Chromosome Numbers of Ice Cod A. glacialis (Gadidae) from Northeast Greenland. Genes (Basel) 2020; 11:genes11121515. [PMID: 33352937 PMCID: PMC7766978 DOI: 10.3390/genes11121515] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 12/11/2020] [Accepted: 12/15/2020] [Indexed: 11/17/2022] Open
Abstract
The ice cod Arctogadus glacialis (Peters, 1872) is one of the few fish species endemic to the Arctic. With a circumpolar distribution, the species is confined to the fjords and shelves of the Arctic seas. Biological information on A. glacialis is scarce, with genomic information restricted to microsatellites. Within the frame of the TUNU-Programme: Arctic Ocean Fishes-Diversity, Adaptation and Conservation, we studied A. glacialis at the chromosomal level to explore fish diversity and evolutionary aspects. The analysis of over 50 individuals from the Northeast Greenland fjords between latitudes 71°09' N and 76°42' N revealed a remarkable intraspecific diversity epitomized by chromosome numbers spanning from 28 to 33, the occurrence of putative B chromosomes, and diversified patterns of distribution of heterochromatin and rDNAs. The number of B chromosomes followed a latitudinal gradient from 0-2 in the north to 2-5 in the south. Considering the benthic and rather stationary life history of this species, the observed chromosomal differences might have arisen independently, possibly driven and/or fostered by the dynamics of repetitive sequences, and are being fixed in relatively isolated fjord populations. The resulting latitudinal cline we observe today might have repercussions on the fate of local populations facing the ongoing climate-driven environmental changes.
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Kowalski S, Paiz LM, da Silva M, Machado ADS, Feldberg E, Traldi JB, Margarido VP, Lui RL. Chromosomal analysis of Centromochlus heckelii (Siluriformes: Auchenipteridae), with a contribution to Centromochlus definition. NEOTROPICAL ICHTHYOLOGY 2020. [DOI: 10.1590/1982-0224-2020-0009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT Historically, there are divergences in the species allocation between Centromochlus and Tatia. This study aimed to generate the first cytogenetic data about Centromochlus and, by analyzing a population of Centromochlus heckelii from the Amazon River basin, to contribute as evidence to a historical taxonomic dilemma. Diploid number of 46 chromosomes and a heteromorphic pair was found in the female karyotypes, thus characterizing a ZZ/ZW sex chromosome system. Pale blocks of heterochromatin were located in centromeric regions of some chromosomes; however, the exclusive female chromosome (W) is almost entirely heterochromatic. AgNORs were detected in terminal position on the short arms of one acrocentric pair in males and two chromosome pairs in females, the acrocentric plus the sex chromosome pair. Notable differences between Centromochlus heckelii and previous data about species of Tatia are: lower diploid number, presence of a sex chromosome system and multiple AgNORs in Centromochlus, while species of Tatia have simple AgNORs and the absence of acrocentric chromosomes. Results in this study show that chromosomal markers could contribute as evidence to taxonomic delimitation studies.
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Takagui FH, Baumgärtner L, Baldissera JN, Laridondo Lui R, Margarido VP, Fonteles SBA, Garcia C, Birindelli JO, Moreira-Filho O, Almeida FS, Giuliano-Caetano L. Chromosomal Diversity of Thorny Catfishes (Siluriformes-Doradidae): A Case of Allopatric Speciation Among Wertheimerinae Species of São Francisco and Brazilian Eastern Coastal Drainages. Zebrafish 2019; 16:477-485. [PMID: 31453759 DOI: 10.1089/zeb.2019.1769] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Wertheimerinae is a small subfamily of thorny catfish composed of two species found in eastern Brazilian coastal drainages: Wertheimeria maculata and Kalyptodoras bahiensis. According to molecular phylogenetic analysis, Franciscodoras marmoratus an endemic species of the São Francisco River is also a member of this subfamily. Even though both phylogenetic approaches suggest that this group is one of the oldest lineages of the Doradidae, a disagreement remains about the constitution of Wertheimerinae. Hence, cytogenetic analysis is important to understand the karyotypic evolution of thorny catfish and can be a useful cytotaxonomic tool to clarify the relationships between these species. All Wertheimerinae species, and F. marmoratus here analyzed, shared 2n = 58 chromosomes, karyotypic formulas (24m+12sm +8st +14a), and nucleolus organizer region (NOR) pattern (terminal 18S rDNA sites on pair 22). Differences were noted in heterochromatin and 5S rDNA site distribution. The chromosomal markers here applied added to the molecular data, reinforcing that these three species actually represent a well-resolved taxonomic unit. Our results represent one more evidence of the ancient connectivity between eastern coastal drainages and São Francisco River, whose separation represented an important event for the allopatric speciation that produced the current forms of Wertheimerinae subfamily.
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Affiliation(s)
- Fábio Hiroshi Takagui
- Animal Cytogenetics Laboratory, Department of General Biology, Biological Sciences Center, Londrina State University, Londrina, Brazil
| | - Lucas Baumgärtner
- Cytogenetic Laboratory, Center for Biological and Health Sciences, Western Paraná State University, Cascavel, Brazil
| | - Joana Neres Baldissera
- Animal Cytogenetics Laboratory, Department of General Biology, Biological Sciences Center, Londrina State University, Londrina, Brazil
| | - Roberto Laridondo Lui
- Cytogenetic Laboratory, Center for Biological and Health Sciences, Western Paraná State University, Cascavel, Brazil
| | - Vladimir Pavan Margarido
- Cytogenetic Laboratory, Center for Biological and Health Sciences, Western Paraná State University, Cascavel, Brazil
| | - Soraia Barreto Aguiar Fonteles
- Genetics of Aquatic Organisms Laboratory, Center for Agrarian Environmental and Biological Sciences, Federal University of Recôncavo of Bahia, Cruz das Almas, Bahia, Brazil
| | - Caroline Garcia
- Cytogenetic Laboratory, Department of Biological Sciences, State University of Southwest of Bahia, Jequié, Bahia, Brazil
| | - José Olivan Birindelli
- Museum of Zoology, Department of Animal and Plant Biology, Centro de Ciências Biológicas, Londrina State University, Londrina, Brazil
| | - Orlando Moreira-Filho
- Molecular Biodiversity and Conservation Laboratory, Department of Genetics and Evolution, Federal University of Sao Carlos, Sao Carlos, Brazil
| | - Fernanda Simões Almeida
- Genetics and Animal Ecology Laboratory, Department of General Biology, Biological Sciences Center, Londrina State University, Londrina, Brazil
| | - Lucia Giuliano-Caetano
- Animal Cytogenetics Laboratory, Department of General Biology, Biological Sciences Center, Londrina State University, Londrina, Brazil
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Baumgärtner L, Paiz LM, Takagui FH, Lui RL, Moreira-Filho O, Giuliano-Caetano L, Portela-Castro ALDB, Margarido VP. Comparative Cytogenetics Analysis on Five Genera of Thorny Catfish (Siluriformes, Doradidae): Chromosome Review in the Family and Inferences About Chromosomal Evolution Integrated with Phylogenetic Proposals. Zebrafish 2018; 15:270-278. [PMID: 29653070 DOI: 10.1089/zeb.2017.1554] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Doradidae has been a target of phylogenetic studies over the last few years, but chromosomal information about the family is still scarce. Therefore, new cytogenetic data are provided herein and they are correlated with phylogenetic proposals to contribute to the knowledge of chromosomal evolution within doradids. Cytogenetic studies were performed on Trachydoras paraguayensis, Anadoras sp. "araguaia," Ossancora eigenmanni, Platydoras armatulus, and Rhinodoras dorbignyi. O. eigenmanni, P. armatulus, and R. dorbignyi had 2n = 58 chromosomes as found for most doradids, but T. paraguayensis and Anadoras sp. "araguaia" had 2n = 56 chromosomes, probably caused by a chromosomal reduction. There is a great maintenance of 2n = 58 verified in doradids, but karyotype formulas are diverse. Moreover, other markers (i.e., nucleolar organizer regions, heterochromatin distribution, and 5S and 18S rDNA) showed a great diversity among the analyzed species. Contrasting the variability in the chromosomal markers with the maintenance of diploid number, it is likely that inversions and translocations played an important role in chromosome differentiation in Doradidae. Herein, we created an integrative discussion linking cytogenetic data to phylogenetic proposals, based on morphological and genetic features, enabling us to identify possible cytogenetic traits, as well as probable chromosomal plesiomorphy and apomorphy of Doradidae species.
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Affiliation(s)
- Lucas Baumgärtner
- 1 Departamento de Biotecnologia, Genética e Biologia Celular, Universidade Estadual de Maringá , Maringá, Brazil
| | - Leonardo Marcel Paiz
- 2 Centro de Ciências Biológicas e da Saúde, Universidade Estadual do Oeste do Paraná , Cascavel, Brazil
| | - Fabio Hiroshi Takagui
- 3 Departamento de Biologia Geral, Universidade Estadual de Londrina , Londrina, Brazil
| | - Roberto Laridondo Lui
- 2 Centro de Ciências Biológicas e da Saúde, Universidade Estadual do Oeste do Paraná , Cascavel, Brazil
| | - Orlando Moreira-Filho
- 4 Departamento de Genética e Evolução, Rodovia Washington Luís (SP 310), Universidade Federal de São Carlos , São Carlos, Brazil
| | | | | | - Vladimir Pavan Margarido
- 2 Centro de Ciências Biológicas e da Saúde, Universidade Estadual do Oeste do Paraná , Cascavel, Brazil
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Carvalho ML, Costa Silva GJD, Melo S, Ashikaga FY, Shimabukuro-Dias CK, Scacchetti PC, Devidé R, Foresti F, Oliveira C. The non-monotypic status of the neotropical fish genus Hemiodontichthys (Siluriformes, Loricariidae) evidenced by genetic approaches. Mitochondrial DNA A DNA Mapp Seq Anal 2018; 29:1224-1230. [DOI: 10.1080/24701394.2018.1431230] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Margarida Lima Carvalho
- Laboratório de Citogenética e Genética Molecular – LABGENE, Universidade Federal do Acre, Rio Branco, Acre, Brazil
| | - Guilherme José da Costa Silva
- Instituto de Biociências de Botucatu, Laboratório de Biologia e Genética de Peixes – LBGP, Universidade Estadual Paulista “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
- Departamento de Biologia, Universidade Santo Amaro São Paulo, Brazil
| | - Silvana Melo
- Instituto de Biociências de Botucatu, Laboratório de Biologia e Genética de Peixes – LBGP, Universidade Estadual Paulista “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
| | - Fernando Yuldi Ashikaga
- Instituto de Biociências de Botucatu, Laboratório de Biologia e Genética de Peixes – LBGP, Universidade Estadual Paulista “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
| | - Cristiane Kioko Shimabukuro-Dias
- Instituto de Biociências de Botucatu, Laboratório de Biologia e Genética de Peixes – LBGP, Universidade Estadual Paulista “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
| | - Priscilla Cardim Scacchetti
- Instituto de Biociências de Botucatu, Laboratório de Biologia e Genética de Peixes – LBGP, Universidade Estadual Paulista “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
| | - Renato Devidé
- Instituto de Biociências de Botucatu, Laboratório de Biologia e Genética de Peixes – LBGP, Universidade Estadual Paulista “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
| | - Fausto Foresti
- Instituto de Biociências de Botucatu, Laboratório de Biologia e Genética de Peixes – LBGP, Universidade Estadual Paulista “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
| | - Claudio Oliveira
- Instituto de Biociências de Botucatu, Laboratório de Biologia e Genética de Peixes – LBGP, Universidade Estadual Paulista “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
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Araya-Jaime C, Lam N, Pinto IV, Méndez MA, Iturra P. Chromosomal organization of four classes of repetitive DNA sequences in killifish Orestias ascotanensis Parenti, 1984 (Cyprinodontiformes, Cyprinodontidae). COMPARATIVE CYTOGENETICS 2017; 11:463-475. [PMID: 29093798 PMCID: PMC5646654 DOI: 10.3897/compcytogen.v11i3.11729] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Accepted: 06/14/2017] [Indexed: 06/01/2023]
Abstract
Orestias Valenciennes, 1839 is a genus of freshwater fish endemic to the South American Altiplano. Cytogenetic studies of these species have focused on conventional karyotyping. The aim of this study was to use classical and molecular cytogenetic methods to identify the constitutive heterochromatin distribution and chromosome organization of four classes of repetitive DNA sequences (histone H3 DNA, U2 snRNA, 18S rDNA and 5S rDNA) in the chromosomes of O. ascotanensis Parenti, 1984, an endemic species restricted to the Salar de Ascotán in the Chilean Altiplano. All individuals analyzed had a diploid number of 48 chromosomes. C-banding identified constitutive heterochromatin mainly in the pericentromeric region of most chromosomes, especially a GC-rich heterochromatic block of the short arm of pair 3. FISH assay with an 18S probe confirmed the location of the NOR in pair 3 and revealed that the minor rDNA cluster occurs interstitially on the long arm of pair 2. Dual FISH identified a single block of U2 snDNA sequences in the pericentromeric regions of a subtelocentric chromosome pair, while histone H3 sites were observed as small signals scattered in throughout the all chromosomes. This work represents the first effort to document the physical organization of the repetitive fraction of the Orestias genome. These data will improve our understanding of the chromosomal evolution of a genus facing serious conservation problems.
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Affiliation(s)
- Cristian Araya-Jaime
- Facultad de Medicina, Universidad de Chile, ICBM, Programa de Genética Humana, Casilla 70061, Santiago, Chile
| | - Natalia Lam
- Departamento de Producción Animal, Facultad de Ciencias Agronómicas, Universidad de Chile. Santa Rosa 11315, La Pintana, Santiago, Chile
| | - Irma Vila Pinto
- Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Casilla 653, CP 780-0024, Santiago, Chile
| | - Marco A. Méndez
- Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Casilla 653, CP 780-0024, Santiago, Chile
| | - Patricia Iturra
- Facultad de Medicina, Universidad de Chile, ICBM, Programa de Genética Humana, Casilla 70061, Santiago, Chile
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Takagui FH, Dias AL, Birindelli JLO, Swarça AC, da Rosa R, Lui RL, Fenocchio AS, Giuliano-Caetano L. First report of B chromosomes in three neotropical thorny catfishes (Siluriformes, Doradidae). COMPARATIVE CYTOGENETICS 2017; 11:55-64. [PMID: 28919949 PMCID: PMC5599706 DOI: 10.3897/compcytogen.v11i1.10496] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2016] [Accepted: 11/15/2016] [Indexed: 06/07/2023]
Abstract
The family Doradidae (Siluriformes) is an important group of fishes endemic to freshwater ecosystems in South America. Some cytogenetic studies have been conducted focused on the group; however, there are no reports on the occurrence of B chromosomes for the family. In this paper the chromosomal characteristics of Platydoras armatulus (Valenciennes, 1840), Pterodoras granulosus (Valenciennes, 1821) and Ossancora punctata (Kner, 1855) were investigated through classical cytogenetics approaches. The conventional staining reveals 2n=58 in Platydoras armatulus and Pterodoras granulosus, however with distinct karyotypic formulae, possibly originated by pericentric inversions. In Ossancora punctata a derivate karyotype was described with 2n=66 and predominance of acrocentric chromosomes. The C banding pattern was resolutive in discriminating the three species, being considered an important cytotaxonomic marker. All species showed B chromosomes totally heterochromatic with non-Mendelian segregation during meiosis and low frequencies in mitotic cells. The probably origin of these additional elements was through fragmentations of chromosomes of the standard complement, which occurred recently and independently in these three species. The diploid number observed in Ossancora punctata is an evidence of centric fusions and up to the moment it is the highest diploid number reported for Doradidae.
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Affiliation(s)
- Fábio Hiroshi Takagui
- Laboratory of Animal Cytogenetics; Department of General Biology, CCB, Universidade Estadual de Londrina. Rodovia Celso Garcia Cid, PR 445, km 380, Londrina-Brasil
| | - Ana Lucia Dias
- Laboratory of Animal Cytogenetics; Department of General Biology, CCB, Universidade Estadual de Londrina. Rodovia Celso Garcia Cid, PR 445, km 380, Londrina-Brasil
| | - José Luís Olivan Birindelli
- Museum of Zoology, Department of Animal and Plant Biology, CCB, Universidade Estadual de Londrina. Rodovia Celso Garcia Cid, PR 445, km 380, Londrina-Brasil
| | - Ana Claudia Swarça
- Laboratory of Histology and Genetics; Department of Histology; Center of Biological Sciences (CCB); Universidade Estadual de Londrina (UEL). Londrina-Brasil
| | - Renata da Rosa
- Laboratory of Animal Cytogenetics; Department of General Biology, CCB, Universidade Estadual de Londrina. Rodovia Celso Garcia Cid, PR 445, km 380, Londrina-Brasil
| | - Roberto Laridondo Lui
- Laboratory of Cytogenetics; Center of Biological Sciences and Health: Universidade do Oeste do Paraná, Campus Cascavel. Cascavel - Brasil
| | - Alberto Sergio Fenocchio
- Laboratory of General Cytogenetics; Department of Genetics; Facultad de Ciencias Naturales; Universidad Nacional de Misiones. Posadas- Argentina
| | - Lucia Giuliano-Caetano
- Laboratory of Animal Cytogenetics; Department of General Biology, CCB, Universidade Estadual de Londrina. Rodovia Celso Garcia Cid, PR 445, km 380, Londrina-Brasil
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Baumgärtner L, Paiz LM, Margarido VP, Portela-Castro AL. Cytogenetics of the Thorny Catfish Trachydoras paraguayensis (Eigenmann & Ward, 1907), (Siluriformes, Doradidae): Evidence of Pericentric Inversions and Chromosomal Fusion. Cytogenet Genome Res 2016; 149:201-206. [DOI: 10.1159/000448126] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/02/2016] [Indexed: 11/19/2022] Open
Abstract
The karyotype and chromosomal characteristics of Trachydorasparaguayensis, a representative of the South American catfish family Doradidae, were analyzed by conventional (Giemsa staining, silver staining, C-banding) and molecular (FISH with rDNA and telomeric probes) cytogenetic techniques. The diploid chromosome number was 2n = 56, with 36 metacentric, 16 submetacentric, and 4 subtelocentric chromosomes in both sexes; however, a remarkable heteromorphism in pair 22 (submetacentric and metacentric elements) was detected in 6 individuals. Compared to other representatives of Doradidae which mostly have 58 chromosomes, the karyotype of T. paraguayensis suggests a reduction in 2n due to chromosomal fusion, as could be deduced from the presence of an interstitial telomere sequence in the submetacentric pair 19. Pale heterochromatic blocks were present in the terminal regions of some chromosomes, very similar to other species of Doradidae. The interstitial position of the NORs observed in the karyotype of T. paraguayensis differs from those reported for most Doradidae species, indicating that it is a derived character. FISH with 5S rDNA revealed 2 interstitial fluorescent signals in the submetacentric pair 22, and the polymorphism of these sites likely resulted from a pericentric inversion.
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Nishiyama PB, Vieira MMR, Porto FE, Borin LA, Portela-Castro ALB, Santos ICM. Karyotypic diversity among three species of the genus Astyanax (Characiformes: Characidae). BRAZ J BIOL 2016; 76:360-6. [PMID: 26934153 DOI: 10.1590/1519-6984.15414] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2014] [Accepted: 02/24/2015] [Indexed: 11/22/2022] Open
Abstract
The group Incertae sedis within the Characidae family currently includes 88 genera, previously included in the subfamily Tetragonopterinae. Among them is the genus Astyanax comprising a group of species with similar morphology and widely distributed in the Neotropics. Thus, the present study aimed to analyze the karyotype diversity in Astyanax species from different watersheds by conventional Giemsa staining, C-banding and fluorescence in situ hybridization (FISH rDNA 18S) probe.specimens of Astyanax aff. paranae belonging to the "scabripinnis complex", Astyanax asunsionensis and Astyanax aff. bimaculatus were analyzed". Two sympatric karyomorphs were observed in Astyanax.aff paranae, one of them having2n=48andthe other one with 2n=50 chromosomes. Other population of this same species also presented 2n=50 chromosomes, but differing in the karyotype formula and with macro supernumerary chromosome found in 100% of the cells in about 80%of females analyzed. Two population of A. asuncionensis and one population of Astyanax. aff. bimaculatus, also showed a diploid number of 50 chromosomes, but also differing in their karyotype formulas. Therefore, A. asuncionensis was also characterized by intraspecific chromosome diversity. The C-banding analysis was able to demonstrate a distinctable to demonstrate a distinct pattern of heterochromatin differing A. asuncionensis from Astyanax aff. paranae and Astyanax aff. bimaculatus. The supernumerary chromosome of Astyanax aff. paranae proved completely heterochromatic. Only Astyanax.aff. bimaculatus multiple showed multiple sites of nucleolar organizing regions. The other species were characterized by having a simple system of NOR. These data contributes to the know ledge of the existing biodiversity in our fish fauna, here highlighted by the inter- and intraspecific chromosomal diversity in the genus Astyanax.
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Affiliation(s)
- P B Nishiyama
- Instituto Multidisciplinar em Saúde, Universidade Federal da Bahia, Vitória da Conquista, BA, Brazil
| | - M M R Vieira
- Unidade Universitária de Coxim, Universidade Estadual do Mato Grosso do Sul, Coxim, MS, Brazil
| | - F E Porto
- Departamento de Biotecnologia, Genética e Biologia Celular, Universidade Estadual de Maringá, Maringá, PR, Brazil
| | - L A Borin
- Departamento de Biotecnologia, Genética e Biologia Celular, Universidade Estadual de Maringá, Maringá, PR, Brazil
| | - A L B Portela-Castro
- Departamento de Biotecnologia, Genética e Biologia Celular, Universidade Estadual de Maringá, Maringá, PR, Brazil
| | - I C M Santos
- Departamento de Biotecnologia, Genética e Biologia Celular, Universidade Estadual de Maringá, Maringá, PR, Brazil
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13
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Traldi JB, Vicari MR, Martinez JDF, Blanco DR, Lui RL, Moreira-Filho O. Chromosome Analyses of Apareiodon argenteus and Apareiodon davisi (Characiformes, Parodontidae): An Extensive Chromosomal Polymorphism of 45S and 5S Ribosomal DNAs. Zebrafish 2016; 13:19-25. [DOI: 10.1089/zeb.2015.1124] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
Affiliation(s)
- Josiane Baccarin Traldi
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos-SP, Brazil
| | - Marcelo Ricardo Vicari
- Departamento de Biologia Estrutural, Molecular e Genética, Universidade Estadual de Ponta Grossa, Ponta Grossa-PR, Brazil
| | | | | | - Roberto Laridondo Lui
- Centro de Ciências Biológicas e da Saúde, Universidade Estadual do Oeste do Paraná, Cascavel-PR, Brazil
| | - Orlando Moreira-Filho
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos-SP, Brazil
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Lui RL, Blanco DR, Traldi JB, Margarido VP, Moreira-Filho O. Karyotypic variation of Glanidium ribeiroi Haseman, 1911 (Siluriformes, Auchenipteridae) along the Iguazu river basin. BRAZ J BIOL 2015; 75:S215-21. [DOI: 10.1590/1519-6984.10714] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2014] [Accepted: 08/04/2014] [Indexed: 11/22/2022] Open
Abstract
Abstract The Iguazu river is a tributary of the left margin of the Paraná river, isolated from this basin about 22 million years ago with the appearance of the Iguazu Falls. The Iguazu river is characterized by high endemism due to two factors: its rugged topography and the old isolation caused by formation of the Iguazu Falls. This study analyzed cytogenetically a population of Glanidium ribeiroi collected in a region at the final stretch of this basin, by Giemsa staining, C-banding, impregnation by silver nitrate, and FISH with probes of 5S rDNA, 18S rDNA, telomeric sequence [TTAGGG]n, and [GATA]n repeats. The diploid number was equal to 58 chromosomes. The heterochromatin was present in the terminal region of almost all chromosomes. The Ag-NORs were simple and presented interstitially on the short arm of the submetacentric pair 14, which was confirmed by FISH with 18S rDNA probe. The 5S rDNA-FISH marked only the submetacentric pair 16 on the long arm in interstitial position. The FISH with [TTAGGG]n probe presented all telomeres labeled as expected, with an absence of Interstitial Telomeric Sequence (ITS). The repetitive [GATA]n sequence was dispersed throughout the genome, with preferential location in the terminal region of all chromosomes. The data obtained are discussed herein with other species of Auchenipteridae, and other previously analyzed populations of G. ribeiroi from the Iguazu river, verifying differences among these populations, which should be mainly related to the rugged topography of this basin.
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Affiliation(s)
- R. L. Lui
- Universidade Estadual do Oeste do Paraná, Brazil
| | - D. R. Blanco
- Universidade Tecnológica Federal do Paraná, Brazil
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15
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Origin of the X1X1X2X2/X1X2Y sex chromosome system of Harttia punctata (Siluriformes, Loricariidae) inferred from chromosome painting and FISH with ribosomal DNA markers. Genetica 2014; 142:119-26. [DOI: 10.1007/s10709-014-9759-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2013] [Accepted: 02/17/2014] [Indexed: 10/25/2022]
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16
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Araújo W, Molina W. Citótipo Exclusivo para Parauchenipterus galeatus (Siluriformes, Auchenipteridae) na Bacia do Atlântico NE Oriental do Brasil: Indicações de um Complexo de Espécies. BIOTA AMAZÔNIA 2013. [DOI: 10.18561/2179-5746/biotaamazonia.v3n2p33-39] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
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17
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Lui RL, Blanco DR, Martinez JDF, Margarido VP, Venere PC, Moreira Filho O. The role of chromosomal fusion in the karyotypic evolution of the genus Ageneiosus (Siluriformes: Auchenipteridae). NEOTROPICAL ICHTHYOLOGY 2013. [DOI: 10.1590/s1679-62252013005000004] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ageneiosus is the most widely distributed genus of the family Auchenipteridae among South American river basins. Although chromosome studies in the family are scarce, this genus has the largest number of analyzed species, with 2n = 54 to 56 chromosomes, differing from the rest of the family (2n = 58). This study aimed to analyze Ageneiosus inermis from the Araguaia River basin. The diploid number found was of 56 chromosomes. Heterochromatin was allocated in terminal region of most chromosomes, plus a pericentromeric heterochromatic block in pair 1, a pair distinguished by size in relation to other chromosomes pairs. AgNORs were detected in only one submetacentric chromosome pair, which was confirmed by FISH. 5S rDNA was present in only one metacentric chromosome pair. Hybridization with [TTAGGG]n sequence marked the telomeres of all chromosomes, in addition to an ITS in the proximal region of the short arm of pair 1. The repetitive [GATA]n sequence was dispersed, with preferential location in terminal region of the chromosomes. Ageneiosus has a genomic organization somewhat different when compared to other Auchenipteridae species. Evidences indicate that a chromosomal fusion originated the first metacentric chromosome pair in A. inermis, rearrangement which may be a basal event for the genus
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18
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Lui RL, Blanco DR, Margarido VP, Troy WP, Filho OM. Comparative chromosomal analysis and evolutionary considerations concerning two species of genus Tatia (Siluriformes, Auchenipteridae). COMPARATIVE CYTOGENETICS 2013; 7:63-71. [PMID: 24260691 PMCID: PMC3833751 DOI: 10.3897/compcytogen.v7i1.4368] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/20/2012] [Accepted: 03/21/2013] [Indexed: 06/02/2023]
Abstract
Auchenipteridae is divided in two subfamilies, Centromochlinae and Auchenipterinae. Centromochlinae has 31 valid species, from which 13 are included in the genus Tatia Miranda Ribeiro, 1911. Among these, Tatia jaracatia Pavanelli & Bifi, 2009 and Tatia neivai (Ihering, 1930) are the only two representative species from the Paraná-Paraguay basins. This study aimed to analyze cytogenetically these two species and thus provide the first chromosomal data for the genus. Although Tatia jaracatia and Tatia neivai presented 2n=58 chromosomes, some differences were observed in the karyotypic formula. The heterochromatin was dispersed in the centromeric and terminal regions of most chromosomes of Tatia jaracatia, and only in the terminal region of most chromosomes of Tatia neivai. The AgNORs were detected in the subtelocentric pair 28 for both species, which was confirmed by FISH with 18S rDNA probe. The 5S rDNA sites were detected in four chromosome pairs in Tatia jaracatia and three chromosome pairs in Tatia neivai. Both species of Tatia presented great chromosomal similarities among themselves; however, when compared to other species of Auchenipteridae, it was possible to identify some differences in the karyotype macrostructure, in the heterochromatin distribution pattern and in the number and position of 5S rDNA sites, which until now seems to be intrinsic to the genus Tatia.
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Affiliation(s)
- Roberto Laridondo Lui
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, Rodovia Washington Luís (SP 310) Km 235, CEP: 13565-905, São Carlos, SP, Brazil
| | - Daniel Rodrigues Blanco
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, Rodovia Washington Luís (SP 310) Km 235, CEP: 13565-905, São Carlos, SP, Brazil
| | - Vladimir Pavan Margarido
- Centro de Ciências Biológicas e da Saúde, Universidade Estadual do Oeste do Paraná, Rua Universitária 2069, CEP: 85819-110, Cascavel, PR, Brazil
| | - Waldo Pinheiro Troy
- Departamento de Ciências Biológicas, Universidade Estadual de Mato Grosso, Rodovia MT 358, Km 07, s/n. Jardim Aeroporto, CEP: 78300-000, Tangará da Serra, MT, Brazil
| | - Orlando Moreira Filho
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, Rodovia Washington Luís (SP 310) Km 235, CEP: 13565-905, São Carlos, SP, Brazil
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19
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Traldi J, Blanco D, Vicari M, Martinez J, Lui R, Barros A, Artoni R, Moreira-Filho O. Chromosomal diversity in Hypostomus (Siluriformes, Loricariidae) with emphasis on physical mapping of 18S and 5S rDNA sites. GENETICS AND MOLECULAR RESEARCH 2013; 12:463-71. [DOI: 10.4238/2013.february.8.11] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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20
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Blanco DR, Vicari MR, Artoni RF, Traldi JB, Moreira-Filho O. Chromosomal characterization of armored catfish Harttia longipinna (Siluriformes, Loricariidae): first report of B chromosomes in the genus. Zoolog Sci 2012; 29:604-9. [PMID: 22943785 DOI: 10.2108/zsj.29.604] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The B chromosomes are accessory elements that are widely distributed among eukaryotic genomes and often show non-Mendelian inheritance. They are considered dispensable for the growth, development, and reproduction of organisms. Some studies have suggested that these elements may affect sex determination. Harttia is a small armored catfish genus that shows sexual dimorphism, including hypertrophied odontodes on the pectoral fin spines and along the margins of the snout in mature males. They exhibit considerable karyotypic diversity with diploid number (2n) variation and heteromorphic sex system in H. carvalhoi. To date, no occurrences of B chromosomes in the Harttia genus were detected and no relation to sexual differentiation in Neotropical fish has been determined. To determine the validity of this claim, the present paper characterized specimens of Harttia longipinna by classical and molecular cytogenetic methods. The 2n found was 58 (16m + 12sm + 16st + 14a), but of the 50 specimens analyzed (30 male and 20 female), 23 specimens (16 males and seven females) show an intra-individual from 0 to 2 micro B chromosomes. The B chromosomes were completely heterochromatic. The single NORs were shown in the first acrocentric pair with silver staining and 18S rDNA probing. FISH performed with 5S rDNA probe showed a single cistron in the proximal region of the short arm of a small metacentric pair. Thus, the cytogenetic data obtained in this study of H. longipinna highlight the karyotypic diversity found within the genus Harttia, and represent the first description of B chromosomes for this genus.
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21
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Bellafronte E, Schemberger MO, Artoni RF, Filho OM, Vicari MR. Sex chromosome system ZZ/ZW in Apareiodon hasemani Eigenmann, 1916 (Characiformes, Parodontidae) and a derived chromosomal region. Genet Mol Biol 2012; 35:770-6. [PMID: 23271937 PMCID: PMC3526084 DOI: 10.1590/s1415-47572012005000077] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2012] [Accepted: 09/05/2012] [Indexed: 11/23/2022] Open
Abstract
Parodontidae fish show few morphological characteristics for the identification of their representatives and chromosomal analyses have provided reliable features for determining the interrelationships in this family. In this study, the chromosomes of Apareiodon hasemani from the São Francisco River basin, Brazil, were analyzed and showed a karyotype with 2n = 54 meta/submetacentric chromosomes, and a ZZ/ZW sex chromosome system. The study revealed active NORs located on pair 11 and additional 18S rDNA sites on pairs 7 and 22. The 5S rDNA locus was found in pair 14. It showed a pericentric inversion regarding the ancestral condition. The satellite DNA pPh2004 was absent in the chromosomes of A. hasemani, a shared condition with most members of Apareiodon. The WAp probe was able to detect the amplification region of the W chromosome, corroborating the common origin of the system within Parodontidae. These chromosomal data corroborate an origin for the ZW system of Parodontidae and aid in the understanding of the differentiation of sex chromosome systems in Neotropical fishes.
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Affiliation(s)
- Elisangela Bellafronte
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, Brazil
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22
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Yano CF, Margarido VP. First cytogenetic studies of the genus Heptapterus (Actinopterygii, Siluriformes): karyotype differentiation and review of cytogenetic data on the Heptapteridae family. JOURNAL OF FISH BIOLOGY 2012; 81:939-953. [PMID: 22880728 DOI: 10.1111/j.1095-8649.2012.03314.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The Neotropical fish Heptapterus mustelinus, collected in the Pindorama stream of the upper Paraná River basin (Brazil), was studied cytogenetically, verifying 54 chromosomes (26m + 18m + 4st + 6a). This diploid number has not been reported among the Heptapteridae that have been studied to date. Unlike most species of the family, there were multiple Ag-nucleolar organizer regions (NOR) and heterochromatin present in the centromeric region of most of the chromosomes of the complement, being Chromomycin A(3) (CMA(3)(+))/4',6-diamidino-2-phenylindole (DAPI(-)) in nine chromosomal pairs, besides the one that coincides with the Ag-NORs. The data presented in this work reveal a different path in the karyotypic evolution of H. mustelinus when compared to the others Heptapteridae genera.
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Affiliation(s)
- C F Yano
- Centro de Ciências Biológicas e da Saúde, Universidade Estadual do Oeste do Paraná, 85819-110, Rua Universitária 2069, Cascavel, PR, Brazil
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23
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Blanco DR, Bertollo LAC, Lui RL, Vicari MR, Margarido VP, Artoni RF, Moreira-Filho O. A new technique for obtaining mitotic chromosome spreads from fishes in the field. JOURNAL OF FISH BIOLOGY 2012; 81:351-7. [PMID: 22747826 DOI: 10.1111/j.1095-8649.2012.03325.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
This study presents an adaptation of current methodologies for preparing mitotic chromosomes from fishes, optimized for use in the field. The high-quality preparations obtained using this modified methodology is suitable for subsequent chromosomal analysis. Importantly, this method is particularly useful when specimen collection sites are far from research laboratories or when researchers are working with highly sensitive species that do not survive long outside of their natural habitats.
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Affiliation(s)
- D R Blanco
- Departamento de Genética e Evolução, Laboraório de Citogenética, Universidade Federal de São Carlos, Via Washington Luís Km 235, São Carlos, SP 13565-905, Brazil
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24
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Traldi JB, Vicari MR, Blanco DR, Martinez JDF, Artoni RF, Moreira-Filho O. First karyotype description of Hypostomus iheringii (Regan, 1908): a case of heterochromatic polymorphism. COMPARATIVE CYTOGENETICS 2012; 6:115-25. [PMID: 24260656 PMCID: PMC3833790 DOI: 10.3897/compcytogen.v6i2.2595] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2011] [Accepted: 02/15/2012] [Indexed: 05/27/2023]
Abstract
In this study, which is the first karyotype analysis of Hypostomus iheringii, nine specimens collected in Córrego da Lapa (tributary of the Passa-Cinco River) showed a diploid number of 80 chromosomes. Silver nitrate staining and fluorescence in situ hybridization (FISH) with an 18S rDNA probe revealed the presence of multiple nucleolus organizer regions (NORs) (chromosome pairs 13, 20, and 34). FISH with a 5S rDNA probe showed that this cistron was only present in chromosome pair 2. When the karyotypes of individual animals were compared, unique heterochromatic polymorphisms were detected on chromosome pairs 1 and 5. Specifically, specimens had heterochromatic blocks (h+h+) on both chromosomes, one chromosome with heterochromatic blocks (h+h-) or chromosomes that lacked heterochromatic blocks (h-h-). Considering that heteromorphic pattern is not correlated with variation in size, the process of heterochromatinization might act on the long arms of these chromosomes. In summary, all chromosomal markers indicate that the karyotype of Hypostomus iheringii is highly differentiated and that the heterochromatinization of chromosomal segments may have contributed to its karyotypic differentiation.
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Affiliation(s)
- Josiane Baccarin Traldi
- Universidade Federal de São Carlos, Departamento de Genética e Evolução, Rodovia Washington Luís Km 235, São Carlos-SP, 13565-905, Brazil
| | - Marcelo Ricardo Vicari
- Universidade Estadual de Ponta Grossa, Departamento de Biologia Estrutural, Molecular e Genética, Av. Carlos Cavalcanti, 4748, Ponta Grossa-PR, 84030-900, Brazil
| | - Daniel Rodrigues Blanco
- Universidade Federal de São Carlos, Departamento de Genética e Evolução, Rodovia Washington Luís Km 235, São Carlos-SP, 13565-905, Brazil
| | - Juliana de Fátima Martinez
- Universidade Federal de São Carlos, Departamento de Genética e Evolução, Rodovia Washington Luís Km 235, São Carlos-SP, 13565-905, Brazil
| | - Roberto Ferreira Artoni
- Universidade Estadual de Ponta Grossa, Departamento de Biologia Estrutural, Molecular e Genética, Av. Carlos Cavalcanti, 4748, Ponta Grossa-PR, 84030-900, Brazil
| | - Orlando Moreira-Filho
- Universidade Federal de São Carlos, Departamento de Genética e Evolução, Rodovia Washington Luís Km 235, São Carlos-SP, 13565-905, Brazil
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25
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Lamatsch DK, Trifonov V, Schories S, Epplen JT, Schmid M, Schartl M. Isolation of a cancer-associated microchromosome in the sperm-dependent parthenogen Poecilia formosa. Cytogenet Genome Res 2011; 135:135-42. [PMID: 21952475 DOI: 10.1159/000331271] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/11/2011] [Indexed: 11/19/2022] Open
Abstract
In the asexual all-female fish species Poecilia formosa, the Amazon molly, supernumerary chromosomes have frequently been found in both laboratory-reared and wild-caught individuals. While wild-caught individuals with B chromosomes are phenotypically indifferent from conspecifics, individuals carrying B chromosomes from recent introgression events in the laboratory show phenotypic changes. Former analyses showed that the expression of a pigment cell locus is associated with the presence of these B chromosomes. In addition, they contain a so far unidentified locus that confers a higher susceptibility to tumor formation in the presence of pigmentation pattern. Isolation by microdissection and hybridization to metaphase chromosomes revealed that they contain one or several sequences with similarity to a highly repetitive pericentromeric and subtelomeric sequence in A chromosomes. Isolation of one particular sequence by AFLP showed that the B chromosomes contain at least 1 copy of an A-chromosomal region which is highly conserved in the whole genus Poecilia, i.e. more than 5 million years old. We propose it to be a single copy sequence.
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Affiliation(s)
- D K Lamatsch
- Physiological Chemistry I, Biocenter, University of Würzburg, Würzburg, Germany
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26
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LUI ROBERTOLARIDONDO, BLANCO DANIELRODRIGUES, MARGARIDO VLADIMIRPAVAN, MOREIRA FILHO ORLANDO. Chromosome characterization and biogeographic relations among three populations of the driftwood catfish Parauchenipterus galeatus (Linnaeus, 1766) (Siluriformes: Auchenipteridae) in Brazil. Biol J Linn Soc Lond 2010. [DOI: 10.1111/j.1095-8312.2009.01389.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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27
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Poletto AB, Ferreira IA, Martins C. The B chromosomes of the African cichlid fish Haplochromis obliquidens harbour 18S rRNA gene copies. BMC Genet 2010; 11:1. [PMID: 20051104 PMCID: PMC2806386 DOI: 10.1186/1471-2156-11-1] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2009] [Accepted: 01/05/2010] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Diverse plant and animal species have B chromosomes, also known as accessory, extra or supernumerary chromosomes. Despite being widely distributed among different taxa, the genomic nature and genetic behavior of B chromosomes are still poorly understood. RESULTS In this study we describe the occurrence of B chromosomes in the African cichlid fish Haplochromis obliquidens. One or two large B chromosome(s) occurring in 39.6% of the analyzed individuals (both male and female) were identified. To better characterize the karyotype and assess the nature of the B chromosomes, fluorescence in situ hybridization (FISH) was performed using probes for telomeric DNA repeats, 18S and 5S rRNA genes, SATA centromeric satellites, and bacterial artificial chromosomes (BACs) enriched in repeated DNA sequences. The B chromosomes are enriched in repeated DNAs, especially non-active 18S rRNA gene-like sequences. CONCLUSION Our results suggest that the B chromosome could have originated from rDNA bearing subtelo/acrocentric A chromosomes through formation of an isochromosome, or by accumulation of repeated DNAs and rRNA gene-like sequences in a small proto-B chromosome derived from the A complement.
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Affiliation(s)
- Andréia B Poletto
- UNESP - Universidade Estadual Paulista, Instituto de Biociências, Departamento de Morfologia, Botucatu, SP, Brazil
| | - Irani A Ferreira
- UNESP - Universidade Estadual Paulista, Instituto de Biociências, Departamento de Morfologia, Botucatu, SP, Brazil
| | - Cesar Martins
- UNESP - Universidade Estadual Paulista, Instituto de Biociências, Departamento de Morfologia, Botucatu, SP, Brazil
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28
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Blanco DR, Lui RL, Bertollo LAC, Margarido VP, Moreira Filho O. Karyotypic diversity between allopatric populations of the group Hoplias malabaricus (Characiformes: Erythrinidae): evolutionary and biogeographic considerations. NEOTROPICAL ICHTHYOLOGY 2010. [DOI: 10.1590/s1679-62252010000200015] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Three populations of the group Hoplias malabaricus from the hydrographic basins of the São Francisco, Araguaia/Tocantins and Xingu Rivers in Brazil were analyzed using classic cytogenetic methods (Giemsa staining, C-banding and Ag-NORs) and molecular methods (fluorescent in situ hybridization with 18S rDNA, 5S rDNA and 5SHindIII satellite DNA probes). The chromosome markers allowed the characterization of these populations as belonging to karyomorph A and the detection of inter-population divergences. These differences likely stem from different evolutionary histories resulting from geographic isolation between populations associated to the dispersive mode of these organisms, reinforcing genetic diversity in the group Hoplias malabaricus.
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29
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Bellafronte E, Vicari MR, Artoni RF, Margarido VP, Moreira-Filho O. Differentiated ZZ/ZW sex chromosomes in Apareiodon ibitiensis (Teleostei, Parodontidae): cytotaxonomy and biogeography. JOURNAL OF FISH BIOLOGY 2009; 75:2313-2325. [PMID: 20738689 DOI: 10.1111/j.1095-8649.2009.02488.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Conventional and molecular chromosomal analyses were carried out on three populations of Apareiodon ibitiensis sampled from the hydrographic basins of the São Francisco River and Upper Paraná River (Brazil). The results reveal a conserved diploid number (2n = 54 chromosomes), a karyotype formula consisting of 50 m-sm + 4st and a ZZ/ZW sex chromosome system that has not been previously identified for the species. C-banding analysis with propidium iodide staining revealed centromeric and terminal bands located in the chromosomes of the specimens from the three populations and allowed the identification of heteromorphism of heterochromatin regions in the Z and W chromosomes. The number of 18S sites located through fluorescent in situ hybridization (FISH) varied between the populations of the São Francisco and Upper Paraná Rivers. The location of 5S rDNA sites proved comparable in one pair of metacentric chromosomes. Thus, the present study proposes a ZZ/ZW sex chromosome system for A. ibitiensis among the Parodontidae, and a hypothesis is presented regarding possible W chromosome differentiation stages in this species through DNA accumulation, showing geographical variations for this characteristic, possibly as a consequence of geographical reproductive isolation.
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Affiliation(s)
- E Bellafronte
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, Rodovia Washington Luís (SP 310) Km 235, 13565-905, São Carlos, SP, Brazil
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