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For: Mitra K, Schaffitzel C, Fabiola F, Chapman MS, Ban N, Frank J. Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements. Mol Cell 2006;22:533-43. [PMID: 16713583 DOI: 10.1016/j.molcel.2006.05.003] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2005] [Revised: 02/21/2006] [Accepted: 05/03/2006] [Indexed: 11/18/2022]
Number Cited by Other Article(s)
1
Hassan A, Byju S, Freitas F, Roc C, Pender N, Nguyen K, Kimbrough E, Mattingly J, Gonzalez Jr. R, de Oliveira R, Dunham C, Whitford P. Ratchet, swivel, tilt and roll: a complete description of subunit rotation in the ribosome. Nucleic Acids Res 2023;51:919-934. [PMID: 36583339 PMCID: PMC9881166 DOI: 10.1093/nar/gkac1211] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 12/01/2022] [Accepted: 12/06/2022] [Indexed: 12/31/2022]  Open
2
Wu Y, Tang M, Wang Z, Yang Y, Li Z, Liang S, Yin P, Qi H. Efficient In Vitro Full-Sense-Codons Protein Synthesis. Adv Biol (Weinh) 2022;6:e2200023. [PMID: 35676219 DOI: 10.1002/adbi.202200023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 04/14/2022] [Indexed: 01/28/2023]
3
Chen L, Chen P, Li S, Jiang M, Zhang H, Chen L, Huang X, Chen Y, Sun L, Dong P, Lin P, Wu Y. Crystal Structure of the Disease-Specific Protein of Rice Stripe Virus. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022;70:8469-8480. [PMID: 35771952 DOI: 10.1021/acs.jafc.2c02165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
4
Zimmer MH, Niesen MJM, Miller TF. Force transduction creates long-ranged coupling in ribosomes stalled by arrest peptides. Biophys J 2021;120:2425-2435. [PMID: 33932440 DOI: 10.1016/j.bpj.2021.03.041] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 03/09/2021] [Accepted: 03/19/2021] [Indexed: 11/16/2022]  Open
5
Gerovac M, Vogel J, Smirnov A. The World of Stable Ribonucleoproteins and Its Mapping With Grad-Seq and Related Approaches. Front Mol Biosci 2021;8:661448. [PMID: 33898526 PMCID: PMC8058203 DOI: 10.3389/fmolb.2021.661448] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 03/04/2021] [Indexed: 12/13/2022]  Open
6
Nascent SecM chain interacts with outer ribosomal surface to stabilize translation arrest. Biochem J 2020;477:557-566. [PMID: 31913464 PMCID: PMC6993859 DOI: 10.1042/bcj20190723] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Revised: 01/06/2020] [Accepted: 01/08/2020] [Indexed: 11/28/2022]
7
Chen J, Chen Z, Wang W, Hou S, Cai J, Xia L, Lu Y. Development of DNA vaccines encoding ribosomal proteins (RplL and RpsA) against Nocardia seriolae infection in fish. FISH & SHELLFISH IMMUNOLOGY 2020;96:201-212. [PMID: 31830563 DOI: 10.1016/j.fsi.2019.12.014] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2019] [Revised: 12/03/2019] [Accepted: 12/08/2019] [Indexed: 06/10/2023]
8
Tam B, Sherf D, Cohen S, Eisdorfer SA, Perez M, Soffer A, Vilenchik D, Akabayov SR, Wagner G, Akabayov B. Discovery of small-molecule inhibitors targeting the ribosomal peptidyl transferase center (PTC) of M. tuberculosis. Chem Sci 2019;10:8764-8767. [PMID: 31803448 PMCID: PMC6849635 DOI: 10.1039/c9sc02520k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Accepted: 08/05/2019] [Indexed: 01/06/2023]  Open
9
Wang W, Liu C, Zhu N, Lin Y, Jiang J, Wang Y, Li Y, Si S. Identification of anti-Gram-negative bacteria agents targeting the interaction between ribosomal proteins L12 and L10. Acta Pharm Sin B 2018;8:772-783. [PMID: 30245964 PMCID: PMC6146381 DOI: 10.1016/j.apsb.2018.07.006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Revised: 06/18/2018] [Accepted: 07/05/2018] [Indexed: 12/29/2022]  Open
10
Crane JM, Randall LL. The Sec System: Protein Export in Escherichia coli. EcoSal Plus 2017;7:10.1128/ecosalplus.ESP-0002-2017. [PMID: 29165233 PMCID: PMC5807066 DOI: 10.1128/ecosalplus.esp-0002-2017] [Citation(s) in RCA: 67] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2017] [Indexed: 11/20/2022]
11
Quantitative determination of ribosome nascent chain stability. Proc Natl Acad Sci U S A 2016;113:13402-13407. [PMID: 27821780 DOI: 10.1073/pnas.1610272113] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
12
Konarev PV, Petoukhov MV, Svergun DI. Rapid automated superposition of shapes and macromolecular models using spherical harmonics. J Appl Crystallogr 2016;49:953-960. [PMID: 27275142 PMCID: PMC4886985 DOI: 10.1107/s1600576716005793] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2016] [Accepted: 04/07/2016] [Indexed: 01/20/2023]  Open
13
Zhang J, Pan X, Yan K, Sun S, Gao N, Sui SF. Mechanisms of ribosome stalling by SecM at multiple elongation steps. eLife 2015;4. [PMID: 26670735 PMCID: PMC4737659 DOI: 10.7554/elife.09684] [Citation(s) in RCA: 64] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2015] [Accepted: 09/30/2015] [Indexed: 12/12/2022]  Open
14
Li W, Kinch LN, Karplus PA, Grishin NV. ChSeq: A database of chameleon sequences. Protein Sci 2015;24:1075-86. [PMID: 25970262 DOI: 10.1002/pro.2689] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2015] [Revised: 04/15/2015] [Accepted: 04/24/2015] [Indexed: 11/11/2022]
15
Absence of knots in known RNA structures. Proc Natl Acad Sci U S A 2015;112:2052-7. [PMID: 25646433 DOI: 10.1073/pnas.1418445112] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
16
Yu D, Zhang C, Qin P, Cornish PV, Xu D. RNA-protein distance patterns in ribosomes reveal the mechanism of translational attenuation. SCIENCE CHINA-LIFE SCIENCES 2014;57:1131-9. [PMID: 25326828 PMCID: PMC4365502 DOI: 10.1007/s11427-014-4753-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/22/2014] [Accepted: 09/04/2014] [Indexed: 11/08/2022]
17
Ito K, Chiba S. Arrest peptides: cis-acting modulators of translation. Annu Rev Biochem 2013;82:171-202. [PMID: 23746254 DOI: 10.1146/annurev-biochem-080211-105026] [Citation(s) in RCA: 187] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
18
Zimmerman E, Bashan A, Yonath A. Antibiotics at the Ribosomal Exit Tunnel-Selected Structural Aspects. Antibiotics (Basel) 2013. [DOI: 10.1002/9783527659685.ch22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
19
Padmanabhan B, Nakamura Y, Antonyuk SV, Strange RW, Hasnain SS, Yokoyama S, Bessho Y. Structure of the hypothetical DUF1811-family protein GK0453 from Geobacillus kaustophilus HTA426. Acta Crystallogr Sect F Struct Biol Cryst Commun 2013;69:342-5. [PMID: 23545635 PMCID: PMC3614154 DOI: 10.1107/s1744309113003369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2012] [Accepted: 02/02/2013] [Indexed: 11/10/2022]
20
Atomic modeling of cryo-electron microscopy reconstructions--joint refinement of model and imaging parameters. J Struct Biol 2013;182:10-21. [PMID: 23376441 DOI: 10.1016/j.jsb.2013.01.003] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2012] [Revised: 12/20/2012] [Accepted: 01/11/2013] [Indexed: 11/22/2022]
21
Gumbart J, Schreiner E, Wilson DN, Beckmann R, Schulten K. Mechanisms of SecM-mediated stalling in the ribosome. Biophys J 2012;103:331-41. [PMID: 22853911 DOI: 10.1016/j.bpj.2012.06.005] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2012] [Revised: 06/01/2012] [Accepted: 06/05/2012] [Indexed: 02/05/2023]  Open
22
Lin KF, Sun CS, Huang YC, Chan SI, Koubek J, Wu TH, Huang JJT. Cotranslational protein folding within the ribosome tunnel influences trigger-factor recruitment. Biophys J 2012;102:2818-27. [PMID: 22735532 DOI: 10.1016/j.bpj.2012.04.048] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2011] [Revised: 04/20/2012] [Accepted: 04/24/2012] [Indexed: 11/26/2022]  Open
23
Harish A, Caetano-Anollés G. Ribosomal history reveals origins of modern protein synthesis. PLoS One 2012;7:e32776. [PMID: 22427882 PMCID: PMC3299690 DOI: 10.1371/journal.pone.0032776] [Citation(s) in RCA: 114] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2011] [Accepted: 01/30/2012] [Indexed: 02/06/2023]  Open
24
Identification of a hyperactive variant of the SecM motif involved in ribosomal arrest. Curr Microbiol 2011;64:17-23. [PMID: 21971705 DOI: 10.1007/s00284-011-0027-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2011] [Accepted: 09/17/2011] [Indexed: 10/17/2022]
25
Lu J, Hua Z, Kobertz WR, Deutsch C. Nascent peptide side chains induce rearrangements in distinct locations of the ribosomal tunnel. J Mol Biol 2011;411:499-510. [PMID: 21663746 PMCID: PMC3143575 DOI: 10.1016/j.jmb.2011.05.038] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2011] [Revised: 05/24/2011] [Accepted: 05/24/2011] [Indexed: 10/18/2022]
26
Nascent polypeptide sequences that influence ribosome function. Curr Opin Microbiol 2011;14:160-6. [PMID: 21342782 DOI: 10.1016/j.mib.2011.01.011] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2010] [Accepted: 01/28/2011] [Indexed: 11/23/2022]
27
Onoue N, Yamashita Y, Nagao N, Goto DB, Onouchi H, Naito S. S-adenosyl-L-methionine induces compaction of nascent peptide chain inside the ribosomal exit tunnel upon translation arrest in the Arabidopsis CGS1 gene. J Biol Chem 2011;286:14903-12. [PMID: 21335553 PMCID: PMC3083191 DOI: 10.1074/jbc.m110.211656] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
28
Bernadó P. Low‐resolution structural approaches to study biomolecular assemblies. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2011. [DOI: 10.1002/wcms.15] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
29
Bhushan S, Hoffmann T, Seidelt B, Frauenfeld J, Mielke T, Berninghausen O, Wilson DN, Beckmann R. SecM-stalled ribosomes adopt an altered geometry at the peptidyl transferase center. PLoS Biol 2011;9:e1000581. [PMID: 21267063 PMCID: PMC3022528 DOI: 10.1371/journal.pbio.1000581] [Citation(s) in RCA: 116] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2010] [Accepted: 12/02/2010] [Indexed: 11/18/2022]  Open
30
Yan F, Doronina VA, Sharma P, Brown JD. Orchestrating ribosomal activity from inside: effects of the nascent chain on the peptidyltransferase centre. Biochem Soc Trans 2010;38:1576-80. [PMID: 21118129 DOI: 10.1042/bst0381576] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
31
Bhushan S, Meyer H, Starosta AL, Becker T, Mielke T, Berninghausen O, Sattler M, Wilson DN, Beckmann R. Structural basis for translational stalling by human cytomegalovirus and fungal arginine attenuator peptide. Mol Cell 2010;40:138-46. [PMID: 20932481 DOI: 10.1016/j.molcel.2010.09.009] [Citation(s) in RCA: 92] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2010] [Revised: 05/28/2010] [Accepted: 07/30/2010] [Indexed: 10/19/2022]
32
Simulating activity of the bacterial ribosome. Q Rev Biophys 2010;42:301-16. [PMID: 20450532 DOI: 10.1017/s0033583510000028] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
33
Cabrita L, Dobson CM, Christodoulou J. Early Nascent Chain Folding Events on the Ribosome. Isr J Chem 2010. [DOI: 10.1002/ijch.201000015] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
34
Yonath A. Winterschlafende Bären, Antibiotika und die Evolution des Ribosoms (Nobel-Aufsatz). Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201001297] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
35
Yonath A. Hibernating Bears, Antibiotics, and the Evolving Ribosome (Nobel Lecture). Angew Chem Int Ed Engl 2010;49:4341-54. [DOI: 10.1002/anie.201001297] [Citation(s) in RCA: 88] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
36
Ito K, Chiba S, Pogliano K. Divergent stalling sequences sense and control cellular physiology. Biochem Biophys Res Commun 2010;393:1-5. [PMID: 20117091 DOI: 10.1016/j.bbrc.2010.01.073] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2010] [Accepted: 01/16/2010] [Indexed: 10/19/2022]
37
Réblová K, Rázga F, Li W, Gao H, Frank J, Sponer J. Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM. Nucleic Acids Res 2009;38:1325-40. [PMID: 19952067 PMCID: PMC2831300 DOI: 10.1093/nar/gkp1057] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
38
Seidelt B, Innis CA, Wilson DN, Gartmann M, Armache JP, Villa E, Trabuco LG, Becker T, Mielke T, Schulten K, Steitz TA, Beckmann R. Structural insight into nascent polypeptide chain-mediated translational stalling. Science 2009;326:1412-5. [PMID: 19933110 DOI: 10.1126/science.1177662] [Citation(s) in RCA: 214] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
39
Tanner DR, Cariello DA, Woolstenhulme CJ, Broadbent MA, Buskirk AR. Genetic identification of nascent peptides that induce ribosome stalling. J Biol Chem 2009;284:34809-18. [PMID: 19840930 DOI: 10.1074/jbc.m109.039040] [Citation(s) in RCA: 88] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
40
Yonath A. Large facilities and the evolving ribosome, the cellular machine for genetic-code translation. J R Soc Interface 2009;6 Suppl 5:S575-85. [PMID: 19656820 DOI: 10.1098/rsif.2009.0167.focus] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
41
Constraint counting on RNA structures: linking flexibility and function. Methods 2009;49:181-8. [PMID: 19398009 DOI: 10.1016/j.ymeth.2009.04.004] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2009] [Revised: 04/06/2009] [Accepted: 04/07/2009] [Indexed: 01/10/2023]  Open
42
Yap MN, Bernstein HD. The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel. Mol Cell 2009;34:201-11. [PMID: 19394297 PMCID: PMC2704006 DOI: 10.1016/j.molcel.2009.04.002] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2008] [Revised: 02/20/2009] [Accepted: 04/03/2009] [Indexed: 11/19/2022]
43
Fulle S, Gohlke H. Statics of the ribosomal exit tunnel: implications for cotranslational peptide folding, elongation regulation, and antibiotics binding. J Mol Biol 2009;387:502-17. [PMID: 19356596 DOI: 10.1016/j.jmb.2009.01.037] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2008] [Revised: 01/18/2009] [Accepted: 01/21/2009] [Indexed: 10/21/2022]
44
Ribosome: an Ancient Cellular Nano-Machine for Genetic Code Translation. NATO SCIENCE FOR PEACE AND SECURITY SERIES B: PHYSICS AND BIOPHYSICS 2009. [DOI: 10.1007/978-90-481-2368-1_8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
45
Ramu H, Mankin A, Vazquez-Laslop N. Programmed drug-dependent ribosome stalling. Mol Microbiol 2008;71:811-24. [PMID: 19170872 DOI: 10.1111/j.1365-2958.2008.06576.x] [Citation(s) in RCA: 121] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
46
Effects on translation pausing of alterations in protein and RNA components of the ribosome exit tunnel. J Bacteriol 2008;190:5862-9. [PMID: 18586934 DOI: 10.1128/jb.00632-08] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
47
Trabuco LG, Villa E, Mitra K, Frank J, Schulten K. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure 2008;16:673-83. [PMID: 18462672 PMCID: PMC2430731 DOI: 10.1016/j.str.2008.03.005] [Citation(s) in RCA: 701] [Impact Index Per Article: 41.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2008] [Revised: 03/03/2008] [Accepted: 03/22/2008] [Indexed: 11/20/2022]
48
Beringer M. Modulating the activity of the peptidyl transferase center of the ribosome. RNA (NEW YORK, N.Y.) 2008;14:795-801. [PMID: 18369182 PMCID: PMC2327356 DOI: 10.1261/rna.980308] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
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Bornemann T, Jöckel J, Rodnina MV, Wintermeyer W. Signal sequence-independent membrane targeting of ribosomes containing short nascent peptides within the exit tunnel. Nat Struct Mol Biol 2008;15:494-9. [PMID: 18391966 DOI: 10.1038/nsmb.1402] [Citation(s) in RCA: 139] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2007] [Accepted: 02/13/2008] [Indexed: 12/13/2022]
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Vazquez-Laslop N, Thum C, Mankin AS. Molecular Mechanism of Drug-Dependent Ribosome Stalling. Mol Cell 2008;30:190-202. [DOI: 10.1016/j.molcel.2008.02.026] [Citation(s) in RCA: 210] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2007] [Revised: 01/31/2008] [Accepted: 02/27/2008] [Indexed: 11/29/2022]
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