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Liu XM, Xia QY, Ju XH. Theoretical investigation on regulating photophysical properties and proton transfer behavior by electronegativity for near-infrared emitting styryl dyes. Photochem Photobiol Sci 2024; 23:575-585. [PMID: 38386257 DOI: 10.1007/s43630-024-00540-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Accepted: 01/16/2024] [Indexed: 02/23/2024]
Abstract
Our main focus is to explore the atomic electronegativity-dependent photoinduced behavior of styryl derivatives (HBO, HBS, and HBSe). The results of structural parameter calculation by the DFT method show that the intramolecular hydrogen bonds of normal and tautomer form are strengthened and weakened, respectively, in an excited state (S1), which is conducive to the excited intramolecular proton transfer (ESIPT) process. The enhancement of excited hydrogen bond is beneficial to the ESIPT process from the aspects of infrared vibration frequency (IR), Mulliken's charge analysis, and density gradient reduction (RDG). Additionally, by determining the bond energy with the band critical point (BCP) parameter, we found that the lower the electronegativity of the atom, the larger the hydrogen bond strength at the excited state and the more likely ESIPT reaction occurs. Meanwhile, the intramolecular H-bonds O-H…N in HBO, HBS, and HBSe are enhanced with the weakened electron-withdrawing capacity of the atom (from O to S and Se). Subsequently, frontier molecular orbital (FMOs) and charge density difference (CDD) analyses essentially revealed that electron redistribution induces the ESIPT process. Low atomic electronegativity exhibits the high chemical activity of the excited state. Furthermore, to demonstrate the electronegativity-dependent ESIPT behavior of the system, we built potential energy curves (PECs) and located the transition states (TS) of proton transfer processes.
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Affiliation(s)
- Xiu-Min Liu
- Key Laboratory of Soft Chemistry and Functional Materials of MOE, School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, 210094, People's Republic of China
| | - Qi-Ying Xia
- School of Chemistry and Chemical Engineering, Linyi University, Linyi, 276005, People's Republic of China.
| | - Xue-Hai Ju
- Key Laboratory of Soft Chemistry and Functional Materials of MOE, School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, 210094, People's Republic of China.
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2
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Abou-Hatab S, Matsika S. Excited state hydrogen or proton transfer pathways in microsolvated n-cyanoindole fluorescent probes. Phys Chem Chem Phys 2024; 26:4511-4523. [PMID: 38240574 DOI: 10.1039/d3cp04844f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
The sensitivity of the fluorescence properties of n-cyanoindole (n-CNI) fluorescent probes to the microenvironment makes them potential reporters of protein conformation and hydration. The fluorescence intensity of 5-CNI, 6-CNI, and 7-CNI is quenched when exposed to water solvent whereas substitution on position 4 of indoles dramatically increases it. A potential mechanism for this sensitivity to water may be similar to that found in indole. The fluorescence of indole is found to be quenched when interacting with water and ammonia solvent molecules via radiationless decay through an S1 (πσ*)/S0 conical intersection caused by excited state proton or hydrogen transfer to the solvent molecules. In this study we examine this fluorescence quenching mechanism along the N-H bond stretch of n-CNI probes using water cluster models and quantum mechanical calculations of the excited states. We find that n-CNI-(H2O)1-2 clusters form cyclic or non-cyclic structures via hydrogen bonds which lead to different photochemical reaction paths that can potentially quench the fluorescence by undergoing internal conversion from S1 to S0. However, the existence of a high energy barrier along the potential energy surface of the S1 state in most cases prevents this from occurring. We show that substitution on position 4 leads to the highest energy barrier that prevents the fluorophore from accessing these non-radiative channels, in agreement with its high intensity. We also find that the energy barrier in the S1 state of non-cyclic 5-CNI-(H2O)1-2 excited complexes decreases as the number of water molecules increases, which suggests great sensitivity of the fluorescence quenching on the aqueous environment.
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3
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Zhang C, Zhao Y, Cui M, Cui X, Zhang C, Meng Q. Simulation for fluorescence detection of O4-methylthymidine with definite photophysical characteristics. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 296:122691. [PMID: 37023654 DOI: 10.1016/j.saa.2023.122691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 03/12/2023] [Accepted: 03/28/2023] [Indexed: 06/19/2023]
Abstract
DNA alkylation is caused by long-term exposure of cells to the environmental and endogenous alkylating agents, which can also lead to DNA mutations and therefore trigger some cancers. Since O4-methylthymidine (O4-meT), mismatched with guanine (G), is the most common but not easily repaired alkylated nucleoside, monitoring O4-meT can help to effectively reduce the occurrence of carcinogenesis. In this work, the modified G-analogues are selected as the fluorescence probe to monitor the existence of O4-meT according to its pairing characteristics. The photo-physical properties of considered G-analogues formed by ring expansion or addition of fluorophores were studied in detail. It is found that, compared with natural G, the absorption peaks of these fluorescence analogues are red-shifted (>55 nm) and the luminescence is enhanced by π-conjugation. Especially, the xG has a large Stokes shift (65 nm) with fluorescence insensitive to natural cytosine (C) and retains efficient emission after pairing, while it is sensitive to O4-meT and the quenching phenomenon occurs due to the excited state intermolecular charge transfer. Accordingly, the xG can be used as a fluorescent probe to identify the O4-meT in solution. In addition, the direct use of deoxyguanine fluorescent analogue for monitoring O4-meT was evaluated by the effects of ligating deoxyribose on absorption and fluorescence emission.
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Affiliation(s)
- Chenyang Zhang
- School of Physics and Electronics, Shandong Normal University, Jinan 250358, China
| | - Yu Zhao
- School of Physics and Electronics, Shandong Normal University, Jinan 250358, China
| | - Menglu Cui
- School of Physics and Electronics, Shandong Normal University, Jinan 250358, China
| | - Xixi Cui
- School of Physics and Electronics, Shandong Normal University, Jinan 250358, China
| | - Changzhe Zhang
- School of Physics and Electronics, Shandong Normal University, Jinan 250358, China.
| | - Qingtian Meng
- School of Physics and Electronics, Shandong Normal University, Jinan 250358, China.
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4
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Wan Y, Li Q, Zhu L, Wan Y, Yan L, Guo M, Yin H, Shi Y. Reconsideration of the ESIPT off mechanism for fluorescent probe MNC in aqueous solution. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 301:122945. [PMID: 37301029 DOI: 10.1016/j.saa.2023.122945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 05/26/2023] [Accepted: 05/27/2023] [Indexed: 06/12/2023]
Abstract
Fluorescent probes with excited state intramolecular proton transfer (ESIPT) properties play a significant role in the research of life science and material science. Guo et al. designed 3-hydroxy-2-(6-Methoxynaphthalen-2-yl)-4H-chromen-4-one (MNC) as a control to achieve the dual-color fluorescence imaging of lipid droplets and endoplasmic reticulum (ER). They deemed that the ESIPT process would be turned off in ER with high water content [J. Am. Chem. Soc. 2021, 143, 3169-3179]. However, contrary to the conventional ESIPT off case, the enol* state fluorescence intensity that should have been enhanced was severely quenched in water. Here, combined with ultrafast spectrum, steady-state fluorescence spectrum and potential energy surface, the mechanism of ESIPT process of MNC turned off in water is revised. Furthermore, the formation of aggregated states in water is responsible for the quenching of MNC fluorescence. This work is expected to provide broader ideas for the design of hydrophobic fluorescent probes.
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Affiliation(s)
- Yu Wan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Qi Li
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Lixia Zhu
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Yongfeng Wan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Lu Yan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Meilin Guo
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Hang Yin
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Ying Shi
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China.
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5
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Zahid Nasim S, Sarfaraz S, Jan F, Yar M, Ur Rehaman A. Computational insights of excited state intramolecular proton transfer (ESIPT) based fluorescent detection and imaging of γ-glutamytranspeptidase activity. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 299:122814. [PMID: 37201329 DOI: 10.1016/j.saa.2023.122814] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 04/15/2023] [Accepted: 04/29/2023] [Indexed: 05/20/2023]
Abstract
γ-Glutamytranspeptidase (GGT) is an important tumor biomarker that widely appears in the tumor cells. Therefore, accurate imaging and detection of GGT activity in live cells, serum and pathological cells grasp great importance for the diagnosis, management, and treatment of cancer. Herein, 2-(2-hydroxyl-phenyl)-6-chloro-4-(3H)-quinazolinone (HPQ) is considered as the fluorophore probe for the detection of GGT activity, which is known for the typical mechanism of excited-state intramolecular proton transfer (ESIPT). All the simulations adopted to evaluate the sensing mechanism were carried out via DFT and TDDFT calculations at CAM-B3LYP/TZVP level of theory. The emission properties of HPQ and HPQ-TD are thoroughly studied to understand the photoinduced electron transfer (PET) and excited state intramolecular proton transfer (ESIPT) process. The results reveal that the fluorescence quenching of HPQ (enol form) is assigned to the PET process, whereas the large Stokes shift in fluorescence emission of HPQ (keto form) is related with ESIPT mechanism. The obtained results are further cross validated by frontier molecular orbital (FMO) analysis, geometric analysis, and potential energy curve (PEC) scanning. Our calculations provide powerful evidence for the ESIPT based sensing mechanism of HPQ (keto-enol form) for GGT activity.
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Affiliation(s)
- Sayed Zahid Nasim
- State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China
| | - Sehrish Sarfaraz
- Department of Chemistry, COMSATS University, Abbottabad Campus, Abbottabad 22060, Pakistan
| | - Faheem Jan
- Shenyang National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, Shenyang 110016, Liaoning, China; School of Materials Science and Engineering, University of Science and Technology of China, Shenyang 110016, Liaoning, China.
| | - Muhammad Yar
- Department of Chemistry, COMSATS University, Abbottabad Campus, Abbottabad 22060, Pakistan.
| | - Attiq Ur Rehaman
- Department of Chemistry, COMSATS University, Abbottabad Campus, Abbottabad 22060, Pakistan
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6
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Chamlagai D, Phanrang PT, Dkhar L, Mohan Rao K, Mitra S. Combined experimental and computational studies on the photophysical properties of systematically substituted polypyridyl based ligands on a benzene core. J Photochem Photobiol A Chem 2023. [DOI: 10.1016/j.jphotochem.2022.114330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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7
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New insights into the excited state of an A-D-A quadrupolar molecule strongly hydrogen bonded to molecules of methanol and hexafluoro isopropanol. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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8
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Switching the ESIPT and TICT process of DP-HPPI via intermolecular hydrogen bonding. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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9
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Tang X, Zhu X, Xu H, Sun H, Han X, Li Q, Zhou B, Ni Z. Hydrogen-bond activated ESIPT in naphthalimide-based fluorescent probe for sensing volatile amines. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 281:121567. [PMID: 35810673 DOI: 10.1016/j.saa.2022.121567] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 06/23/2022] [Accepted: 06/25/2022] [Indexed: 06/15/2023]
Abstract
Amines levels present important indicative value in food safety and human health. Although they are involved in some normal physiological responses of the organism, their overproduction or intake may cause pathological responses. Herein, we report a recyclable visual packaging bag for volatile amines detections based on the naphthylamide derivative N-S and its positive PL characteristics. Specifically, handmade test strips based on compound N-S have been applied to fish freshness labeling, and the cyclic fumigation experiment shows its restorable PL effect and efficiency. The possible PL transfer mechanism of naphthylamide derivative N-S is uncovered by the density functional theory (DFT) calculation and titration mass spectrometer and 1H NMR. This work expands a conjugation in a molecule by hydrogen-bond activated ESIPT (H-ESIPT) and provides a portable detection method for volatile amines detection.
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Affiliation(s)
- Xinxue Tang
- School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou 221116, PR China; Department of Materials Science and Engineering, City University of Hong Kong, Kowloon, Hong Kong, PR China
| | - Xuguang Zhu
- School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou 221116, PR China
| | - Huilong Xu
- School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou 221116, PR China
| | - Hao Sun
- School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou 221116, PR China
| | - Xiang'en Han
- School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou 221116, PR China.
| | - Qun Li
- Department of Materials Science and Engineering, City University of Hong Kong, Kowloon, Hong Kong, PR China
| | - Binbin Zhou
- Department of Materials Science and Engineering, City University of Hong Kong, Kowloon, Hong Kong, PR China.
| | - Zhonghai Ni
- School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou 221116, PR China.
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10
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Song Y, Wang Q, Gao W, He Z, Wu Y. Effects of solvents on the excited‐state intramolecular proton transfer in 3‐HTC. J PHYS ORG CHEM 2022. [DOI: 10.1002/poc.4402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Yao‐Dong Song
- School of Electronic, Electrical Engineering and Physics Fujian University of Technology Fuzhou Fujian China
| | - Qian‐Ting Wang
- Fujian Provincial Key Laboratory of Advanced Materials Processing and Application Fuzhou Fujian China
- Sanming University Sanming Fujian China
- Fujian Provincial Engineering Research Center of Die & Mold Fuzhou Fujian China
- Mould Technology Development Base of Fujian Province Fuzhou Fujian China
- Fuzhou Innovation Platform for Novel Materials and Mould Technology Fuzhou Fujian China
| | - Wei‐wei Gao
- School of Electronic, Electrical Engineering and Physics Fujian University of Technology Fuzhou Fujian China
| | - Zhixiong He
- School of Electronic, Electrical Engineering and Physics Fujian University of Technology Fuzhou Fujian China
| | - Yan Wu
- School of Electronic, Electrical Engineering and Physics Fujian University of Technology Fuzhou Fujian China
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11
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Zhang H, Li Z, Liu J, Wang Y. Effect of intermolecular hydrogen bonds on the proton transfer and fluorescence characteristics of 1′-hydroxy-2′-acetonaphthone. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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12
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Zucolotto Cocca LH, Pelosi A, Sciuti LF, M. G. Abegão L, Kamada K, Piguel S, Renato Mendonça C, De Boni L. Two-photon brightness of highly fluorescent imidazopyridine derivatives: Two-photon and ultrafast transient absorption studies. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118379] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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13
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Jahromi AM, Solhjoo A, Ghasemi M, Khedri M, Maleki R, Tayebi L. Atomistic insight into 2D COFs as antiviral agents against SARS-CoV-2. MATERIALS CHEMISTRY AND PHYSICS 2022; 276:125382. [PMID: 34725529 PMCID: PMC8550915 DOI: 10.1016/j.matchemphys.2021.125382] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Revised: 10/23/2021] [Accepted: 10/25/2021] [Indexed: 06/13/2023]
Abstract
The recent pandemic of COVID-19 has raised global health concerns. Preventing severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) activity in the body is a very promising method to overcome the COVID-19 pandemic. One of the prevention methods is constraining the binding process among the human cell receptor-ACE2 and coronavirus spike protein. In the research done, the effect of deformation of the spike protein structure, due to the covalent organic frameworks (COFs), in reducing the interactions of ACE2 and the spike protein by the computational method was investigated. In this regard, atomic analysis of the interactions of ACE2 and the spike protein is provided using a molecular dynamics simulation. First, we investigated the interactions of the three different COFs, including COF-78, DAAQ-TFP, and COF-OEt, with the spike protein by analyzing the bond energies, as well as structural changes of the spike protein. Then, intermolecular interactions of the deformed spike protein along with ACE2 were assessed to clarify the protein's fusion after the deformation. As indicated by the results, although all introduced COFs deformed the spike protein in an effective way, COF-78 showed the best performance in the prevention of spike protein-ACE2 interactions by changing the molecular structure of the protein. Indeed, the interaction analysis of the deformed spike protein by COF-78 with the ACE2 showed that their interactions had the lowest absolute value of energy, along with the least amount of hydrogen bonds, in which the compaction of the protein was lower compared to the other deformed proteins. Moreover, having a high contact area with an aqueous media as well as severe fluctuations during the simulation time confirmed the positive performance of COF-78. In the current study, we aimed to introduce novel materials and COVID-19 prevention methodology that can be used in face masks and for surface disinfection.
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Affiliation(s)
- Ahmad Miri Jahromi
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran
| | - Aida Solhjoo
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran
- Department of Medicinal Chemistry, School of Pharmacy, Shiraz University of Medical Sciences, Shiraz, Iran
| | - Mehdi Ghasemi
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran
- Department of Petroleum Engineering, Amirkabir University of Technology, Tehran, Iran
| | - Mohammad Khedri
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran
| | - Reza Maleki
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran
| | - Lobat Tayebi
- Marquette University School of Dentistry, Milwaukee, WI, 53233, USA
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14
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Effectively controlling the ESIPT behavior and fluorescence feature of 2-(2′-hydroxyphenyl)-4-chloromethylthiazole by changing its π-conjugation: A theoretical exploration. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2021.113548] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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15
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Guo Y, Zhong Y, Wu Z, Wang C, Wang Y, Zhang J, Wang H, Zhao G. The hydrogen bond effect on excited state mechanism for 2-isopropyl thioxanone in protic solvents: Experimental and theoretical investigation. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.117012] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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16
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Proton coupled electron transport of pH sensitive coumarin based ruthenium(II) complex: A functional mimic of photosystem II. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY 2021. [DOI: 10.1016/j.jpap.2021.100057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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17
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Solubility of Luteolin and Other Polyphenolic Compounds in Water, Nonpolar, Polar Aprotic and Protic Solvents by Applying FTIR/HPLC. Processes (Basel) 2021. [DOI: 10.3390/pr9111952] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
In recent years, flavonoids have become a highly researched topic due to their health beneficial effects. Since flavonoids’ solubility plays a significant role in their use in pharmaceutical, food, biological, and chemical areas, the determination of suitable solvents is crucial. Fourier transform infrared (FTIR) analysis was used to characterize functional groups of several flavonoids and phenolic compounds, namely luteolin, hesperidin, quercetin, naringenin, gallic acid and tannic acid. Concentration dependence on transmittance was evaluated for these compounds in ethanol. Afterwards, luteolin was chosen as a model flavonoid, with its concentration correlated with transmittance using 15 solvents with different polarities. Luteolin solubility was further corroborated with high-performance liquid chromatography (HPLC). These results shed light on using FTIR as a semi-quantitative method for the initial screening of solvents and the solubility of different compounds while saving time and solvents. Hence, HPLC would only be needed as a final step for the most promising solvents.
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Ji F, Guo Y, Wang M, Wang C, Wu Z, Wang S, Wang H, Feng X, Zhao G. New insights into ESIPT mechanism of three sunscreen compounds in solution: A combined experimental and theoretical study. Colloids Surf B Biointerfaces 2021; 207:112039. [PMID: 34416444 DOI: 10.1016/j.colsurfb.2021.112039] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Revised: 07/27/2021] [Accepted: 08/12/2021] [Indexed: 01/29/2023]
Abstract
In this present work, we have successfully designed and investigated three flavonoid sunscreen compounds. Based on steady-state spectroscopy and time-dependent density functional theory (TDDFT), the mechanism of excited state intramolecular proton transfer (ESIPT) of sunscreen compounds was studied. The calculated UV-vis absorption spectra and fluorescence emission spectra are in good agreement with the experimental results in methanol solution. The potential energy curve demonstrates that the ESIPT process can easily occur in the three sunscreen compounds without energy barrier. Therefore, the absorbed excitation energy can get back to the ground state through a non-radiative relaxation process. Light stability tests ensure that the three flavonoids have the potential as sunscreens. This work provides not only an application of the ESIPT process in sunscreen mechanisms, but also a theory basis for the development of novel sunscreen molecules.
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Affiliation(s)
- Feixiang Ji
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Institute of Chemistry, National Demonstration Center for Experimental Chemistry & Chemical Engineering Education, National Virtual Simulation Experimental Teaching Center for Chemistry & Chemical Engineering Education, Department of Chemistry, School of Science, Tianjin University, Tianjin, 300354, China
| | - Yurong Guo
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Institute of Chemistry, National Demonstration Center for Experimental Chemistry & Chemical Engineering Education, National Virtual Simulation Experimental Teaching Center for Chemistry & Chemical Engineering Education, Department of Chemistry, School of Science, Tianjin University, Tianjin, 300354, China
| | - Mengqi Wang
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Institute of Chemistry, National Demonstration Center for Experimental Chemistry & Chemical Engineering Education, National Virtual Simulation Experimental Teaching Center for Chemistry & Chemical Engineering Education, Department of Chemistry, School of Science, Tianjin University, Tianjin, 300354, China
| | - Chao Wang
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Institute of Chemistry, National Demonstration Center for Experimental Chemistry & Chemical Engineering Education, National Virtual Simulation Experimental Teaching Center for Chemistry & Chemical Engineering Education, Department of Chemistry, School of Science, Tianjin University, Tianjin, 300354, China
| | - Zibo Wu
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Institute of Chemistry, National Demonstration Center for Experimental Chemistry & Chemical Engineering Education, National Virtual Simulation Experimental Teaching Center for Chemistry & Chemical Engineering Education, Department of Chemistry, School of Science, Tianjin University, Tianjin, 300354, China
| | - Shiping Wang
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Institute of Chemistry, National Demonstration Center for Experimental Chemistry & Chemical Engineering Education, National Virtual Simulation Experimental Teaching Center for Chemistry & Chemical Engineering Education, Department of Chemistry, School of Science, Tianjin University, Tianjin, 300354, China
| | - Haiyuan Wang
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Institute of Chemistry, National Demonstration Center for Experimental Chemistry & Chemical Engineering Education, National Virtual Simulation Experimental Teaching Center for Chemistry & Chemical Engineering Education, Department of Chemistry, School of Science, Tianjin University, Tianjin, 300354, China
| | - Xia Feng
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Institute of Chemistry, National Demonstration Center for Experimental Chemistry & Chemical Engineering Education, National Virtual Simulation Experimental Teaching Center for Chemistry & Chemical Engineering Education, Department of Chemistry, School of Science, Tianjin University, Tianjin, 300354, China
| | - Guangjiu Zhao
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Institute of Chemistry, National Demonstration Center for Experimental Chemistry & Chemical Engineering Education, National Virtual Simulation Experimental Teaching Center for Chemistry & Chemical Engineering Education, Department of Chemistry, School of Science, Tianjin University, Tianjin, 300354, China.
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19
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Rohman MA, Phanrang PT, Chamlagai D, Mitra S. Deciphering Spectroscopic and Structural Insights into the Photophysical Behavior of 2,2'-Dipyridylamine: An Efficient Environment Sensitive Fluorescence Probe. J Phys Chem A 2021; 125:6964-6975. [PMID: 34372657 DOI: 10.1021/acs.jpca.1c04772] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Excited state deactivation properties and the effects of solvent hydrogen bonding (HB) on the photophysical behavior of 2,2'-dypyridylamine (DPyA) were investigated by steady state and time-resolved fluorescence experiments, molecular docking, and density functional theory (DFT) calculations. In addition to the polarity effect, the contributions of solvent HB donation (HBD) acidity and HB acceptance (HBA) basicity to modulate the solvatochromic spectral properties were estimated from multiparametric linear regression analysis using Kamlet-Taft (KT) and Catalán formalisms. The importance of C-N bond torsion, leading to the trans → cis conversion, was manifested by substantial increase in DPyA fluorescence yield in the presence of cyclodextrin (CD) and glycerol. The unusually low fluorescence yield in aqueous medium was explained on the basis of synergistic effect of solvent hydrogen bonding combined with excited state conformational isomerization, which renders DPyA to be an excellent environment sensitive fluorescence reporter. The experimental results were verified with structural insights obtained from DFT calculations at B3LYP/6-311++G(d,p) level and construction of potential energy surface (PES) in the ground state as well as in the excited states.
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Affiliation(s)
| | | | - Dipak Chamlagai
- Department of Chemistry, North-Eastern Hill University, Shillong-793022, India
| | - Sivaprasad Mitra
- Department of Chemistry, North-Eastern Hill University, Shillong-793022, India
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20
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Miri Jahromi A, Zandi P, Khedri M, Ghasemy E, Maleki R, Tayebi L. Molecular insight into optimizing the N- and P-doped fullerenes for urea removal in wearable artificial kidneys. JOURNAL OF MATERIALS SCIENCE. MATERIALS IN MEDICINE 2021; 32:49. [PMID: 33891249 PMCID: PMC8065003 DOI: 10.1007/s10856-021-06525-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 04/01/2021] [Indexed: 06/12/2023]
Abstract
Urea is the result of the breakdown of proteins in the liver, the excess of which circulates in the blood and is adsorbed by the kidneys. However, in the case of kidney diseases, some products, specifically urea, cannot be removed from the blood by the kidneys and causes serious health problems. The end-stage renal disease (ESRD) patients are not able to purify their blood, which endangers their life. ESRD patients require dialysis, a costly and difficult method of urea removal from the blood. Wearable artificial kidneys (WAKs) are consequently designed to remove the waste from blood. Regarding the great amount of daily urea production in the body, WAKs should contain strong and selective urea adsorbents. Fullerenes-which possess fascinating chemical properties-have been considered herein to develop novel urea removal adsorbents. Molecular dynamics (MD) has enabled researchers to study the interaction of different materials and can pave the way toward facilitating the development of wearable devices. In this study, urea adsorption by N-doped fullerenes and P-doped fullerenes were assessed through MD simulations. The urea adsorption was simulated by five samples of fullerenes, with phosphorous and different nitrogen dopant contents. For comparing the urea adsorption capacity in the performed simulations, detailed characteristics-including the energy analysis, radius of gyration, radial distribution function (RDF), root-mean-square fluctuation (RMSD), and H-bond analyses were investigated. It had been determined that the fullerene containing 8% nitrogen-with the highest reduction in the radius of gyration, the maximum RDF, a high adsorption energy, and a high number of hydrogen bonds-adsorbs urea more efficiently.
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Affiliation(s)
- Ahmad Miri Jahromi
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran
| | - Pegah Zandi
- School of Metallurgy and Materials Engineering, College of Engineering, University of Tehran, Tehran, Iran
| | - Mohammad Khedri
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran
| | - Ebrahim Ghasemy
- Nanotechnology Department, School of New Technologies, Iran University of Science and Technology, Tehran, Iran
| | - Reza Maleki
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran.
| | - Lobat Tayebi
- Marquette University School of Dentistry, Milwaukee, WI, 53233, USA.
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21
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Xia Y, Li M, Xu A, Zhang Z, Sun A, Ding S, Liu Y. Sensing mechanism of fluorogenic urea with fluoride in solvent media: A new fluorescence quenching mechanism. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 246:118992. [PMID: 33038861 DOI: 10.1016/j.saa.2020.118992] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 08/29/2020] [Accepted: 09/19/2020] [Indexed: 06/11/2023]
Abstract
The interaction of 1-Phenyl-3-(pyren-1-yl) urea (LH) and fluoride anion (F-) with a unique ON1-OFF-ON2 fluorescent response has been investigated by the density functional theory (DFT) and time-dependent density functional theory (TDDFT) calculations. The hydrogen-bonding dynamics and photophysical properties of the complex LH-F, as well as its isolated receptor LH and anion form L-H1, have been studied in detail. We demonstrate that the intermolecular hydrogen bond (N-H…F) of the complex LH-F is greatly enhanced in the electronically excited state. The nonradiative deactivation via electron transfer and internal conversion rather than excited-state intramolecular proton transfer (ESIPT) can be facilitated by the excited state hydrogen bond strengthening. The results have been cross-validated by molecular structure, electronic spectra, frontier molecular orbitals, and infrared spectra as well as hydrogen bond binding energy. These results indicate that the current calculations completely reproduce the experimental results and provide compelling evidence for the sensing mechanism of LH for F-.
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Affiliation(s)
- Yong Xia
- Hunan Key Laboratory of Biomass Fiber Functional Materials, School of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, China; College of Chemistry and Chemical Engineering, Central South University, Changsha 410083, China.
| | - Mengyao Li
- Hunan Key Laboratory of Biomass Fiber Functional Materials, School of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, China
| | - Aixiang Xu
- School of Civil Engineering, Hunan University of Technology, Zhuzhou 412007, China
| | - Zhe Zhang
- School of Civil Engineering, Hunan University of Technology, Zhuzhou 412007, China
| | - Aokui Sun
- Hunan Key Laboratory of Biomass Fiber Functional Materials, School of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, China
| | - Sha Ding
- Hunan Key Laboratory of Biomass Fiber Functional Materials, School of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, China; School of Civil Engineering, Hunan University of Technology, Zhuzhou 412007, China.
| | - Yuejun Liu
- Hunan Key Laboratory of Biomass Fiber Functional Materials, School of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, China
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22
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Ding S, Xu A, Sun A, Xia Y, Liu Y. Substituent effect on ESIPT and hydrogen bond mechanism of N-(8-Quinolyl) salicylaldimine: A detailed theoretical exploration. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 245:118937. [PMID: 32977109 DOI: 10.1016/j.saa.2020.118937] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2020] [Revised: 08/18/2020] [Accepted: 09/07/2020] [Indexed: 06/11/2023]
Abstract
The effects of substituent on excited-state intramolecular proton transfer (ESIPT) and hydrogen bonding of N-(8-Quinolyl) salicylaldimine (QS) have been studied by theoretical calculation with DFT and TDDFT. The representative electron-withdrawing nitryl and electron-donating methoxyl were selected to analyze the effects on geometries, intramolecular hydrogen bond interaction, absorption/fluorescence spectra, and the ESIPT process. The configurations of the three molecules (QS, QS-OMe and QS-NO2) were optimized in the ground and excited states. The structure parameters, infrared spectra, hydrogen bond interactions, frontier molecular orbitals, absorption/fluorescence spectra, and potential curves have cross-validated the current results. The results show that the introduction of substituent results in a bathochromic-shift of the absorption and fluorescence spectra with large Stokes shift, and is more beneficial to the ESIPT process. The current work will be beneficial to the improvement of ESIPT properties and deepen understanding of the mechanism of ESIPT process.
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Affiliation(s)
- Sha Ding
- School of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, China; School of Civil Engineering, Hunan University of Technology, Zhuzhou 412007, China; Hunan Key Laboratory of Biomass Fiber Functional Materials, Hunan University of Technology, Zhuzhou 412007, China
| | - Aixiang Xu
- School of Civil Engineering, Hunan University of Technology, Zhuzhou 412007, China
| | - Aokui Sun
- School of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, China
| | - Yong Xia
- School of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, China; Hunan Key Laboratory of Biomass Fiber Functional Materials, Hunan University of Technology, Zhuzhou 412007, China; College of Chemistry and Chemical Engineering, Central South University, Changsha 410083, China.
| | - Yuejun Liu
- School of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, China
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23
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Zhang M, Zhu X. Computational investigation of flavonol-based GLP-1R agonists using DFT calculations and molecular docking. COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2020.113005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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24
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Alimohammadi E, Khedri M, Miri Jahromi A, Maleki R, Rezaian M. Graphene-Based Nanoparticles as Potential Treatment Options for Parkinson's Disease: A Molecular Dynamics Study. Int J Nanomedicine 2020; 15:6887-6903. [PMID: 32982240 PMCID: PMC7509323 DOI: 10.2147/ijn.s265140] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 09/08/2020] [Indexed: 12/20/2022] Open
Abstract
INTRODUCTION The study of abnormal aggregation of proteins in different tissues of the body has recently earned great attention from researchers in various fields of science. Concerning neurological diseases, for instance, the accumulation of amyloid fibrils can contribute to Parkinson's disease, a progressively severe neurodegenerative disorder. The most prominent features of this disease are the degeneration of neurons in the substantia nigra and accumulation of α-synuclein aggregates, especially in the brainstem, spinal cord, and cortical areas. Dopamine replacement therapies and other medications have reduced motor impairment and had positive consequences on patients' quality of life. However, if these medications are stopped, symptoms of the disease will recur even more severely. Therefore, the improvement of therapies targeting more basic mechanisms like prevention of amyloid formation seems to be critical. It has been shown that the interactions between monolayers like graphene and amyloids could prevent their fibrillation. METHODS For the first time, the impact of four types of last-generation graphene-based nanostructures on the prevention of α-synuclein amyloid fibrillation was investigated in this study by using molecular dynamics simulation tools. RESULTS Although all monolayers were shown to prevent amyloid fibrillation, nitrogen-doped graphene (N-Graphene) caused the most instability in the secondary structure of α-synuclein amyloids. Moreover, among the four monolayers, N-Graphene was shown to present the highest absolute value of interaction energy, the lowest contact level of amyloid particles, the highest number of hydrogen bonds between water and amyloid molecules, the highest instability caused in α-synuclein particles, and the most significant decrease in the compactness of α-synuclein protein. DISCUSSION Ultimately, it was concluded that N-Graphene could be the most effective monolayer to disrupt amyloid fibrillation, and consequently, prevent the progression of Parkinson's disease.
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Affiliation(s)
- Ehsan Alimohammadi
- Neurosurgery Department, Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Mohammad Khedri
- Department of Chemical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran1591634311, Iran
| | - Ahmad Miri Jahromi
- Department of Petroleum Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran1591634311, Iran
| | - Reza Maleki
- Department of Chemical Engineering, Sharif University of Technology, Tehran, Iran
| | - Milad Rezaian
- Department of Pharmacology, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran19839-63113, Iran
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25
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Ding S, Xu A, Sun A, Xia Y, Liu Y. An Excited State Intramolecular Proton Transfer-Based Fluorescent Probe with a Large Stokes Shift for the Turn-on Detection of Cysteine: A Detailed Theoretical Exploration. ACS OMEGA 2020; 5:19695-19701. [PMID: 32803064 PMCID: PMC7424714 DOI: 10.1021/acsomega.0c02393] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Accepted: 07/17/2020] [Indexed: 05/29/2023]
Abstract
DFT and TDDFT calculations are adopted to study the sensing mechanism of a turn-on-type cysteine fluorescent probe (2-(1-phenyl-imidazo[1,5-α]pyridine-3-yl)phenyl acrylate, denoted as MZC-AC). The photoinduced electron transfer (PET) process of MZC-AC and the excited state intramolecular proton transfer (ESIPT) process of MZC have been investigated in detail. We demonstrate that the fluorescence quenching of MZC-AC is ascribed to the PET mechanism and the large Stokes shift fluorescence emission of MZC is the result of the ESIPT mechanism. The results have been cross-validated by geometries, frontier molecular orbital analysis, and potential energy curve scanning. As a result, our calculations completely reproduce the experimental results and give powerful evidence for the sensing mechanism of MZC-AC for cysteine.
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Affiliation(s)
- Sha Ding
- School
of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, PR China
- Hunan
Key Laboratory of Biomass Fiber Functional Materials, Hunan University of Technology, Zhuzhou 412007, PR China
| | - Aixiang Xu
- School
of Civil Engineering, Hunan University of
Technology, Zhuzhou 412007, China
| | - Aokui Sun
- School
of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, PR China
| | - Yong Xia
- School
of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, PR China
- College
of Chemistry and Chemical Engineering, Central
South University, Changsha 410083, China
| | - Yuejun Liu
- School
of Packaging and Materials Engineering, Hunan University of Technology, Zhuzhou 412007, PR China
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