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Abstract
We performed a structural study of N-alkylated halogenopyridinium cations to examine whether choice of the N-substituent has any considerable effect on the halogen bonding capability of the cations. For that purpose, we prepared a series of N-ethyl-3-halopyridinium iodides and compared them with their N-methyl-3-halopyridinium analogues. Structural analysis revealed that N-ethylated halogenopyridinium cations form slightly shorter C−X⋯I− halogen bonds with iodide anion. We have also attempted synthesis of ditopic symmetric bis-(3-iodopyridinium) dications. Although successful in only one case, the syntheses have afforded two novel ditopic asymmetric monocations with an iodine atom bonded to the pyridine ring and another on the aliphatic N-substituent. Here, the C−I⋯I− halogen bond lengths involving pyridine iodine atom were notably shorter than those involving an aliphatic iodine atom as a halogen bond donor. This trend in halogen bond lengths is in line with the charge distribution on the Hirshfeld surfaces of the cations—the positive charge is predominantly located in the pyridine ring making the pyridine iodine atom σ-hole more positive than the one on the alkyl chan.
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Scheiner S, Michalczyk M, Zierkiewicz W. Coordination of anions by noncovalently bonded σ-hole ligands. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2019.213136] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Szell PMJ, Cavallo G, Terraneo G, Metrangolo P, Gabidullin B, Bryce DL. Comparing the Halogen Bond to the Hydrogen Bond by Solid-State NMR Spectroscopy: Anion Coordinated Dimers from 2- and 3-Iodoethynylpyridine Salts. Chemistry 2018; 24:11364-11376. [DOI: 10.1002/chem.201801279] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Revised: 05/01/2018] [Indexed: 11/10/2022]
Affiliation(s)
- Patrick M. J. Szell
- Department of Chemistry and Biomolecular Sciences; University of Ottawa; 10 Marie Curie Private Ottawa Ontario K1N 6N5 Canada
| | - Gabriella Cavallo
- Laboratory of Supramolecular and Bionanomaterials; Department of Chemistry, Materials and Chemical Engineering “Giulio Natta”; Politecnico di Milano; Via L. Mancinelli 7 20131 Milano Italy
| | - Giancarlo Terraneo
- Laboratory of Supramolecular and Bionanomaterials; Department of Chemistry, Materials and Chemical Engineering “Giulio Natta”; Politecnico di Milano; Via L. Mancinelli 7 20131 Milano Italy
| | - Pierangelo Metrangolo
- Laboratory of Supramolecular and Bionanomaterials; Department of Chemistry, Materials and Chemical Engineering “Giulio Natta”; Politecnico di Milano; Via L. Mancinelli 7 20131 Milano Italy
| | - Bulat Gabidullin
- Department of Chemistry and Biomolecular Sciences; University of Ottawa; 10 Marie Curie Private Ottawa Ontario K1N 6N5 Canada
| | - David L. Bryce
- Department of Chemistry and Biomolecular Sciences; University of Ottawa; 10 Marie Curie Private Ottawa Ontario K1N 6N5 Canada
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Gilday LC, Robinson SW, Barendt TA, Langton MJ, Mullaney BR, Beer PD. Halogen Bonding in Supramolecular Chemistry. Chem Rev 2015; 115:7118-95. [DOI: 10.1021/cr500674c] [Citation(s) in RCA: 913] [Impact Index Per Article: 91.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Lydia C. Gilday
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Sean W. Robinson
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Timothy A. Barendt
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Matthew J. Langton
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Benjamin R. Mullaney
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Paul D. Beer
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
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Rumyantsev M, Sitnikov NS, Somov NV. Hydrogen-Bond-Assisted Organocatalytic Acetalization of Secondary Alcohols: Experimental and Theoretical Studies. J Phys Chem A 2015; 119:4108-17. [DOI: 10.1021/acs.jpca.5b02102] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Misha Rumyantsev
- Nizhny Novgorod State Technical University n.a. R.E. Alekseev, 24 minin st., Nizhny Novgorod 603950, Russia
- Lobachevsky State University of Nizhni Novgorod, 23 Prospekt Gagarina (Gagarin Avenue), Nizhny
Novgorod 603950, Russia
| | - Nikolay S. Sitnikov
- Lobachevsky State University of Nizhni Novgorod, 23 Prospekt Gagarina (Gagarin Avenue), Nizhny
Novgorod 603950, Russia
| | - Nikolay V. Somov
- Lobachevsky State University of Nizhni Novgorod, 23 Prospekt Gagarina (Gagarin Avenue), Nizhny
Novgorod 603950, Russia
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Kowalska K, Trzybiński D, Sikorski A. Influence of the halogen substituent on the formation of halogen and hydrogen bonding in co-crystals formed from acridine and benzoic acids. CrystEngComm 2015. [DOI: 10.1039/c5ce01321f] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
A series of nine co-crystals formed from acridine and benzoic acids have been synthesized and structurally characterized and the influence of the halogen substituent on the formation of halogen and hydrogen bonding in the co-crystals of the title compounds has been investigated.
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Affiliation(s)
- Kornelia Kowalska
- Faculty of Chemistry
- University of Gdańsk
- W. Stwosza 63
- 80-308 Gdańsk, Poland
| | - Damian Trzybiński
- Faculty of Chemistry
- University of Gdańsk
- W. Stwosza 63
- 80-308 Gdańsk, Poland
| | - Artur Sikorski
- Faculty of Chemistry
- University of Gdańsk
- W. Stwosza 63
- 80-308 Gdańsk, Poland
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Cui PP, Cui LF, Zhang LL, Sun DF. Halogen Bonding in the Assembly of a 1D Cadmium(II) Polymer Based on Chlorendic Acid (HET). Z Anorg Allg Chem 2013. [DOI: 10.1002/zaac.201300141] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Troff RW, Mäkelä T, Topić F, Valkonen A, Raatikainen K, Rissanen K. Alternative Motifs for Halogen Bonding. European J Org Chem 2013. [DOI: 10.1002/ejoc.201201512] [Citation(s) in RCA: 190] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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The role of Fe–X···X–Fe contacts in the crystal structures of [(2-iodopyridinium)2FeX4]X (X = Cl, Br). Struct Chem 2012. [DOI: 10.1007/s11224-012-0090-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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11
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Kniep F, Walter SM, Herdtweck E, Huber SM. 4,4'-Azobis(halopyridinium) derivatives: strong multidentate halogen-bond donors with a redox-active core. Chemistry 2012; 18:1306-10. [PMID: 22238245 DOI: 10.1002/chem.201103071] [Citation(s) in RCA: 89] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2011] [Revised: 11/25/2011] [Indexed: 11/09/2022]
Affiliation(s)
- Florian Kniep
- Department Chemie, Technische Universität München, Lichtenbergstraße 4, 85747 Garching, Germany
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Awwadi FF, Haddad SF, Twamley B, Willett RD. Effect of intermolecular interactions on the molecular structure; theoretical study and crystal structures of 4-bromopyridinium tetrafluoroborate and diaqua(3-bromopyridine)difluorocopper(ii). CrystEngComm 2012. [DOI: 10.1039/c2ce25433f] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Nelyubina YV, Antipin MY, Lyssenko KA. Extremely short halogen bond: the nature and energy of iodine–oxygen interactions in crystalline iodic acid. MENDELEEV COMMUNICATIONS 2011. [DOI: 10.1016/j.mencom.2011.09.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Synthesis and biological activity of tricyclic cycloalkylimidazo-, pyrimido- and diazepinopurinediones. Eur J Med Chem 2011; 46:3590-607. [DOI: 10.1016/j.ejmech.2011.05.023] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2010] [Revised: 05/10/2011] [Accepted: 05/10/2011] [Indexed: 11/17/2022]
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15
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Nelyubina YV, Antipin MY, Dunin DS, Kotov VY, Lyssenko KA. Unexpected “amphoteric” character of the halogen bond: the charge density study of the co-crystal of N-methylpyrazine iodide with I2. Chem Commun (Camb) 2010; 46:5325-7. [DOI: 10.1039/c0cc01094d] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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16
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Bacchi A, Carcelli M, Chiodo T, Pelagatti P. Diamondoid and square-grid networks based on bent wheel-and-axle diols. CrystEngComm 2010. [DOI: 10.1039/c0ce00173b] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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17
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Karolak-Wojciechowska J, Kieć-Kononowicz K, Sieroń L. Charge-assisted N–H…Cl hydrogen bonds in the structures of 5-benzylidene-imidazol-4-one glycinate hydrochlorides. J Mol Struct 2009. [DOI: 10.1016/j.molstruc.2009.06.046] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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18
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Tremelling GW, Foxman BM, Landee CP, Turnbull MM, Willett RD. Transition metal complexes of 2-amino-3,5-dihalopyridines: Syntheses, structures and magnetic properties of (3,5-diCAPH)2CuX4 and (3,5-diBAPH)2CuX4. Dalton Trans 2009:10518-26. [DOI: 10.1039/b914392k] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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