1
|
Crans DC, Sánchez-Lombardo I, McLauchlan CC. Exploring Wells-Dawson Clusters Associated With the Small Ribosomal Subunit. Front Chem 2019; 7:462. [PMID: 31334216 PMCID: PMC6624422 DOI: 10.3389/fchem.2019.00462] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 06/11/2019] [Indexed: 01/23/2023] Open
Abstract
The polyoxometalate P2W18O626-, the Wells-Dawson cluster, stabilized the ribosome sufficiently for the crystallographers to solve the phase problem and improve the structural resolution. In the following we characterize the interaction of the Wells-Dawson cluster with the ribosome small subunit. There are 14 different P2W18O626- clusters interacting with the ribosome, and the types of interactions range from one simple residue interaction to complex association of multiple sites including backbone interactions with a Wells-Dawson cluster. Although well-documented that bridging oxygen atoms are the main basic sites on other polyoxometalate interaction with most proteins reported, the W=O groups are the main sites of the Wells-Dawson cluster interacting with the ribosome. Furthermore, the peptide chain backbone on the ribosome host constitutes the main sites that associate with the Wells-Dawson cluster. In this work we investigate the potential of one representative pair of closely-located Wells-Dawson clusters being a genuine Double Wells-Dawson cluster. We found that the Double Wells-Dawson structure on the ribosome is geometrically sound and in line with other Double Wells-Dawson clusters previously observed in the solid state and solution. This information suggests that the Double Wells-Dawson structure on the ribosome is real and contribute to characterization of this particular structure of the ribosome.
Collapse
Affiliation(s)
- Debbie C Crans
- Department Chemistry and the Cell and Molecular Biology Program, Colorado State University, Fort Collins, CO, United States
| | - Irma Sánchez-Lombardo
- Department Chemistry and the Cell and Molecular Biology Program, Colorado State University, Fort Collins, CO, United States.,División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán, Mexico
| | - Craig C McLauchlan
- Department of Chemistry, Illinois State University, Normal, IL, United States
| |
Collapse
|
2
|
Dhifi M, Thabet S, Harchani A, Haddad A. Synthesis, characterization, Hirshfeld surface analysis and theoretical calculation of new organic–inorganic hybrid material: (C4H7N2)6[As2W18O62]·4H2O. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2019. [DOI: 10.1007/s13738-018-1554-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
3
|
Shi SY, Chen LY, Zhao XB, Li Y, Zhang J, Ren BX, Cui XB. pH-Dependent Assembly of Three POM-Based Host–Guest Compounds Constituted by Keggin Polyoxoanions and 4,4′-Bipyridines. J CLUST SCI 2018. [DOI: 10.1007/s10876-018-1475-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
4
|
Shi S, Chen L, Zhao X, Ren B, Cui X, Zhang J. Role of hydrogen-bonds in the crystal packing of three novel strandberg-type polyoxoanion compounds. Inorganica Chim Acta 2018. [DOI: 10.1016/j.ica.2018.07.033] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
5
|
Photo-electrochemical and physical characterizations of a new single crystal POM-based material. Application in photocatalysis. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.07.006] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
6
|
Hmida F, Ayed B, Haddad A. Hydrothermal synthesis of a new organic–inorganic hybrid with Dawson type polyanions as building blocks: Na3(C7NH8O2)3[P2W18O62]·16H2O. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.03.046] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
7
|
Bauzá A, Mooibroek TJ, Frontera A. Towards design strategies for anion–π interactions in crystal engineering. CrystEngComm 2016. [DOI: 10.1039/c5ce01813g] [Citation(s) in RCA: 83] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
This highlight article summarizes some of the fundamental aspects of the anion–π interaction leading to several design strategies for generating it in solids. In the main body we highlight some relevant examples that illustrate the viability of these strategies and the importance of anion–π interactions in crystal engineering.
Collapse
Affiliation(s)
- Antonio Bauzá
- Departament de Quimica
- Universitat de les Illes Balears
- 07122 Palma de Mallorca, Spain
| | | | - Antonio Frontera
- Departament de Quimica
- Universitat de les Illes Balears
- 07122 Palma de Mallorca, Spain
| |
Collapse
|
8
|
Emirdag-Eanes M, Önen B, McMillen CD. Hydrothermal synthesis and characterization of one dimensional chain structures of monolacunary Keggin polyoxoanions substituted with copper. Inorganica Chim Acta 2015. [DOI: 10.1016/j.ica.2014.12.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
9
|
Yan J, Zhao X, Huang J, Gong K, Han Z, Zhai X. Synthesis and characterization of two polyoxometalates consisting of different Cu-ligand hydrogen phosphate units. J SOLID STATE CHEM 2014. [DOI: 10.1016/j.jssc.2013.12.029] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
10
|
Iyer AK, Peter SC. Two-Dimensional Bicapped Supramolecular Hybrid Semiconductor Material Constructed from the Insulators α-Keggin Polyoxomolybdate and 4,4′-Bipyridine. Inorg Chem 2013; 53:653-60. [DOI: 10.1021/ic402858u] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Abishek K. Iyer
- New Chemistry Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore, 560064 India
| | - Sebastian C. Peter
- New Chemistry Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore, 560064 India
| |
Collapse
|
11
|
Emirdag-Eanes M, Önen B. Hydrothermal synthesis and characterization of a novel supramolecular hybrid based on Keggin and Cu(I) complex. INORG CHEM COMMUN 2013. [DOI: 10.1016/j.inoche.2013.10.014] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
12
|
Guo J, Yang J, Liu YY, Ma JF. Two new polyoxometalate-templated supramolecular compounds constructed by a new tridentate ligand 2,4,6-tris[1-(4-oxidroxypyridinium)-ylmethyl]-mesitylene. Inorganica Chim Acta 2013. [DOI: 10.1016/j.ica.2013.02.022] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
13
|
Xu Y, Yu K, Zhou B, Su Z, Wu J. A new {P2W18} polyoxometalate cluster modified with copper complex based on pz, 2,2–bipy, and in situ amino acid. J COORD CHEM 2013. [DOI: 10.1080/00958972.2013.781160] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Yanglei Xu
- a Key Laboratory of Synthesis of Functional Materials and Green Catalysis, Colleges of Heilongjiang Province , Harbin Normal University , Harbin , P.R. China
| | - Kai Yu
- a Key Laboratory of Synthesis of Functional Materials and Green Catalysis, Colleges of Heilongjiang Province , Harbin Normal University , Harbin , P.R. China
| | - Baibin Zhou
- a Key Laboratory of Synthesis of Functional Materials and Green Catalysis, Colleges of Heilongjiang Province , Harbin Normal University , Harbin , P.R. China
| | - Zhanhua Su
- a Key Laboratory of Synthesis of Functional Materials and Green Catalysis, Colleges of Heilongjiang Province , Harbin Normal University , Harbin , P.R. China
| | - Jiang Wu
- a Key Laboratory of Synthesis of Functional Materials and Green Catalysis, Colleges of Heilongjiang Province , Harbin Normal University , Harbin , P.R. China
| |
Collapse
|
14
|
Xiao LN, Wang Y, Peng Y, Li GH, Xu JN, Wang LM, Hu YY, Wang TG, Gao ZM, Zheng DF, Cui XB, Xu JQ. Hydrothermal syntheses and structures of four new polyoxometalate based supramolecular architectures. Inorganica Chim Acta 2012. [DOI: 10.1016/j.ica.2012.01.018] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
15
|
Chen X, Han S, Wang R. Crystal engineering through charge-assisted hydrogen bonds, multiple C–H⋯O bonds and π–π stacking: from (H2bipy)[Cu(ox)2] to (H2bipy)[NaH(ox)2] and (H2bipy)[H2(ox)2] (H2bipy = 4,4′-bipyridin-1,1′-dium; ox = oxalate). CrystEngComm 2012. [DOI: 10.1039/c2ce06516a] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|