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Ocampo Cárdenas B, Román G, Noseda Grau E, Simonetti S. Study of clopidogrel and clonidine interactions for cardiovascular formulations: progress from DFT modeling. NANOSCALE ADVANCES 2025; 7:2338-2350. [PMID: 40046251 PMCID: PMC11878234 DOI: 10.1039/d4na00776j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Accepted: 02/19/2025] [Indexed: 04/10/2025]
Abstract
The drugs clopidogrel and clonidine are frequently used to treat cardiovascular diseases, which are the leading cause of mortality worldwide. Since these medications are frequently taken in combination, it is crucial to examine their molecular interactions. Therefore, herein, the bandgap energy, chemical potential, chemical hardness and softness parameters were calculated using a density functional theory (DFT)-based method. In addition, infrared (IR) spectrum, natural bond orbital (NBO), molecular electrostatic potential (MEP), electron localization function (ELF) and total density of states (TDOS) plots complemented the analysis. Clonidine exhibited greater sensitivity to electrophilic attack, while the electronic affinity of clopidogrel was slightly higher. According to the MEP map, negative charge density was located on the oxygen atoms of clopidogrel, and the positive charge was located on the nitrogen atoms of clonidine. Notably, both the drugs exhibited similar reactivity in water. Clopidogrel was less reactive than clonidine, and the interaction between the molecules occurred via physisorption, which was in agreement with the TDOS plot. NBO analysis revealed a low charge variation, in accordance with the physical adsorption-like bonding between the drugs. The lowest energy for the clopidogrel-clonidine interaction was attained via the formation of four H bonds, as indicated by a significant intensive peak at 3360 cm-1 in the IR spectrum. Hydrogen bonds played a crucial role in the controlled drug delivery application as it allowed moderate and reversible drug adsorption, facilitating drug release in the biological environment. IR spectra also supported the absence of degradation or chemical reaction between the drugs, confirming the preservation of the individual active pharmaceutical ingredient.
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Affiliation(s)
- B Ocampo Cárdenas
- Universidad del Quindío Carrera 15 Con Calle 12 Norte Armenia Quindío Colombia
| | - G Román
- Universidad Tecnológica Nacional, Facultad Regional Bahía Blanca 11 de Abril 461 B8000LMI Bahía Blanca Buenos Aires Argentina
- Instituto de Física del Sur (IFISUR), Departamento de Física, Universidad Nacional del Sur (UNS), CONICET Av. L. N. Alem 1253 B8000CPB - Bahía Blanca Argentina
| | - E Noseda Grau
- Universidad Tecnológica Nacional, Facultad Regional Bahía Blanca 11 de Abril 461 B8000LMI Bahía Blanca Buenos Aires Argentina
- Instituto de Física del Sur (IFISUR), Departamento de Física, Universidad Nacional del Sur (UNS), CONICET Av. L. N. Alem 1253 B8000CPB - Bahía Blanca Argentina
| | - S Simonetti
- Universidad Tecnológica Nacional, Facultad Regional Bahía Blanca 11 de Abril 461 B8000LMI Bahía Blanca Buenos Aires Argentina
- Instituto de Física del Sur (IFISUR), Departamento de Física, Universidad Nacional del Sur (UNS), CONICET Av. L. N. Alem 1253 B8000CPB - Bahía Blanca Argentina
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Kushwaha PK, Srivastava SK. Tuning optoelectronic properties of indandione-based D-A materials by malononitrile group acceptors: A DFT and TD-DFT approach. J Mol Model 2024; 30:356. [PMID: 39347831 DOI: 10.1007/s00894-024-06159-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Accepted: 09/23/2024] [Indexed: 10/01/2024]
Abstract
CONTEXT Indandione-based materials are promising candidates for organic electronics, offering high electron mobility and tunable optoelectronic properties. In this study, we explore the optoelectronic and photovoltaic properties of indandione-based donor-acceptor (D-A) materials, specifically (R1) and (R2), by introducing malononitrile group acceptors into their molecular structure. These strong electron-withdrawing acceptors are designed to enhance charge transfer and overall material performance. The designed molecules (DM1-DM4) exhibit a low optical band gap of approximately 1.77 eV, significantly lower than the reference materials (R1 and R2) at around 2.24 eV in a solvent environment. Among the designed molecules, DM4 stands out with superior photovoltaic parameters, including a narrow optical band gap (1.77 eV), higher electron affinity (3.49 eV), an extended excited state lifetime (10.0 ns) owing to its low electron and hole reorganization energies (λe ~ 0.13 eV and λh ~ 0.24 eV), and improved short-circuit current density (Jsc) of ~ 15.73 mA/cm2. Notably, DM4 achieves a power conversion efficiency (PCE) of ~ 18.5%, making it an excellent candidate for device applications. METHOD A comprehensive computational investigation was carried out on indandione-based D-A materials with malononitrile group acceptors (DM1-DM4) using density functional theory (DFT) and time-dependent DFT (TD-DFT) methods, as implemented in Gaussian 16 software. We examined the electronic and optical properties of the proposed molecules through frontier molecular orbital (FMO) analysis, UV-Vis absorption spectra, density of states (DOS), exciton binding energy (Eb), and transition density matrix (TDM) analysis, utilizing GaussView 6.0 and Multiwfn 3.8 software. The photovoltaic parameters and power conversion efficiency (PCE) were evaluated using the Scharber and Alharbi models.
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Affiliation(s)
- Pankaj Kumar Kushwaha
- Department of Physics, School of Physical Sciences, Mahatma Gandhi Central University, Motihari, East Champaran, Bihar, 845401, India
| | - Sunil Kumar Srivastava
- Department of Physics, School of Physical Sciences, Mahatma Gandhi Central University, Motihari, East Champaran, Bihar, 845401, India.
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Anugrah DSB, Darmalim LV, Polanen MRI, Putro PA, Sasongko NA, Siahaan P, Ramadhan ZR. Quantum Chemical Calculation for Intermolecular Interactions of Alginate Dimer-Water Molecules. Gels 2022; 8:703. [PMID: 36354611 PMCID: PMC9689446 DOI: 10.3390/gels8110703] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 10/22/2022] [Accepted: 10/28/2022] [Indexed: 07/22/2023] Open
Abstract
The abundance of applications of alginates in aqueous surroundings created by their interactions with water is a fascinating area of research. In this paper, computational analysis was used to evaluate the conformation, hydrogen bond network, and stabilities for putative intermolecular interactions between alginate dimers and water molecules. Two structural forms of alginate (alginic acid, alg, and sodium alginate, SA) were evaluated for their interactions with water molecules. The density functional theory (DFT-D3) method at the B3LYP functional and the basis set 6-31++G** was chosen for calculating the data. Hydrogen bonds were formed in the Alg-(H2O)n complexes, while the SA-(H2O)n complexes showed an increase in Van der Walls interactions and hydrogen bonds. Moreover, in the SA-(H2O)n complexes, metal-nonmetal bonds existed between the sodium atom in SA and the oxygen atom in water (Na…O). All computational data in this study demonstrated that alginate dimers and water molecules had moderate to high levels of interaction, giving more stability to their complex structure.
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Affiliation(s)
- Daru Seto Bagus Anugrah
- Biotechnology Study Program, Faculty of Biotechnology, Atma Jaya Catholic University of Indonesia, BSD Campus, Tangerang 15345, Indonesia
| | - Laura Virdy Darmalim
- Biotechnology Study Program, Faculty of Biotechnology, Atma Jaya Catholic University of Indonesia, BSD Campus, Tangerang 15345, Indonesia
| | - Muhammad Rifky Irwanto Polanen
- Food Technology Study Program, Faculty of Biotechnology, Atma Jaya Catholic University of Indonesia, BSD Campus, Tangerang 15345, Indonesia
| | - Permono Adi Putro
- Department of Physics, Faculty of Science, Universitas Mandiri, Subang 41211, Indonesia
| | - Nurwarrohman Andre Sasongko
- Department of Chemistry, Faculty of Science and Mathematics, Diponegoro University, Semarang 50275, Indonesia
- Department of Chemistry, Pukyong National University, Busan 48513, Korea
| | - Parsaoran Siahaan
- Department of Chemistry, Faculty of Science and Mathematics, Diponegoro University, Semarang 50275, Indonesia
| | - Zeno Rizqi Ramadhan
- School of Chemistry, University of New South Wales, Sydney, NSW 2052, Australia
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DFT, NBO, HOMO-LUMO, NCI, stability, Fukui function and hole – Electron analyses of tolcapone. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113296] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Baykara H, Ilhan S, Oztomsuk A, Seyitoglu MS, Levent A, Okumus V, Dündar A. Synthesis and Characterization of a New Difunctional Ligand and Its Metal Complexes: An Experimental, Theoretical, Cyclic Voltammetric, and Antimicrobial Study. SYNTHESIS AND REACTIVITY IN INORGANIC, METAL-ORGANIC, AND NANO-METAL CHEMISTRY 2015; 45:1795-1807. [DOI: https:/doi.org/10.1080/15533174.2013.872134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2013] [Accepted: 11/24/2013] [Indexed: 07/01/2024]
Affiliation(s)
- Haci Baykara
- Faculty of Art and Science, Chemistry Department, Siirt University, Siirt, Turkey
| | - Salih Ilhan
- Faculty of Art and Science, Chemistry Department, Siirt University, Siirt, Turkey
| | - Abdussamet Oztomsuk
- Faculty of Art and Science, Chemistry Department, Siirt University, Siirt, Turkey
| | - M. Salih Seyitoglu
- Faculty of Art and Science, Chemistry Department, Siirt University, Siirt, Turkey
| | - Abdulkadir Levent
- Batman University, Health Services Vocational College, Batman, Turkey
| | - Veysi Okumus
- Faculty of Art and Science, Biology Department, Siirt University, Siirt, Turkey
| | - Abdurrahman Dündar
- Mardin Artuklu University, Vocational Higher School of Health Services, Medical Promotion and Marketing Program, Mardin, Turkey
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Baykara H, Ilhan S, Oztomsuk A, Seyitoglu MS, Levent A, Okumus V, Dündar A. Synthesis and Characterization of a New Difunctional Ligand and Its Metal Complexes: An Experimental, Theoretical, Cyclic Voltammetric, and Antimicrobial Study. ACTA ACUST UNITED AC 2015. [DOI: 10.1080/15533174.2013.872134] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Haci Baykara
- Faculty of Art and Science, Chemistry Department, Siirt University, Siirt, Turkey
| | - Salih Ilhan
- Faculty of Art and Science, Chemistry Department, Siirt University, Siirt, Turkey
| | - Abdussamet Oztomsuk
- Faculty of Art and Science, Chemistry Department, Siirt University, Siirt, Turkey
| | - M. Salih Seyitoglu
- Faculty of Art and Science, Chemistry Department, Siirt University, Siirt, Turkey
| | - Abdulkadir Levent
- Batman University, Health Services Vocational College, Batman, Turkey
| | - Veysi Okumus
- Faculty of Art and Science, Biology Department, Siirt University, Siirt, Turkey
| | - Abdurrahman Dündar
- Mardin Artuklu University, Vocational Higher School of Health Services, Medical Promotion and Marketing Program, Mardin, Turkey
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Chai S, Cong SL. Excited state intramolecular proton transfer and substituent effect of 10-hydroxybenzo[h]quinoline: A time-dependent density functional theory study. COMPUT THEOR CHEM 2014. [DOI: 10.1016/j.comptc.2014.02.019] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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