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Atangana Nkene ER, Kamsi RAY, Adjia HZ, Abe MTO, Ngoupo AT, Ndjaka JMB. Comparative study of physico-chemical properties of some molecules from Khaya Grandifoliola plant. Sci Rep 2025; 15:10430. [PMID: 40140436 PMCID: PMC11947123 DOI: 10.1038/s41598-025-88302-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2024] [Accepted: 01/28/2025] [Indexed: 03/28/2025] Open
Abstract
The three molecular compounds: A (17-epi-methyl-6-hydroxylangolensate), B (7-deacetoxy-7-oxogedunin) and C (7-deacetoxy-7R-hydroxygedunin) isolated from Khaya Grandifoliola, a plant of the Meliaceae family, able to protect the normal human hepatocyte cell line against paracetamol-induced hepatotoxicity were studied using HF and DFT methods. It appears from this study that compound A has the greatest capacity of donating charges while compound B, which is the most reactive compound according to the HOMO-LUMO energy gap, has a greater capacity to accept charges. From the calculation of certain donor-acceptor parameters, it comes out that compound C is the most easily oxidizable substance and therefore the most effective free radical scavenger. Of the three molecular compounds, A is the best antioxidant while B is the best antireductant. From the values obtained for compounds A, B and C, we concluded that these compounds are better antioxidants than β-carotene and better antireductants than vitamins A, C and E. Compounds A, B, and C are less efficient electron acceptors than fluorine and more efficient electron donors than Na. The calculation of certain thermodynamic parameters shows that, the molecular compounds studied can easily bind to a biomolecular complex. UV-vis spectrum analysis shows that the maximum peaks are located in the UV region between 230 and 356 nm. The nonlinear optical parameters along with vibrational frequencies of these compounds were calculated and compared.
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Affiliation(s)
- E R Atangana Nkene
- Department of Physics, Faculty of Science, University of Douala, P. O. Box 24157, Douala, Cameroon
| | - R A Yossa Kamsi
- Wood, Water Ressources and Environment, Department of Wood Sciences and Forest, Higher Institute of Agriculture, University of Bertoua, P. O. Box 60, Belabo, Cameroon.
- Department of Physics, Faculty of Science, University of Yaounde I, P. O. Box 812, Yaounde, Cameroon.
| | - H Zangue Adjia
- Department of Chemical - Physics, National Higher School of Agro - Industrial Sciences, University of Ngaoundere, P. O. Box 455, Ngaoundere, Cameroon
| | - M T Ottou Abe
- Department of Physics, Faculty of Science, University of Yaounde I, P. O. Box 812, Yaounde, Cameroon
| | - A Teyou Ngoupo
- Department of Physics, Faculty of Science, University of Yaounde I, P. O. Box 812, Yaounde, Cameroon
| | - J M B Ndjaka
- Department of Physics, Faculty of Science, University of Yaounde I, P. O. Box 812, Yaounde, Cameroon
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The mechanisms involved into the inhibitory effects of ionic liquids chemistry on adsorption performance of ciprofloxacin onto inorganic minerals. Colloids Surf A Physicochem Eng Asp 2022. [DOI: 10.1016/j.colsurfa.2022.129422] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Chen JJ, Huang PY, Yang ZS, Cai XZ, Shi Y, Hu WY, Zhang XH, Chai HF, Huang ZY. SYNTHESIS, CHARACTERIZATION, CRYSTAL STRUCTURE, AND DFT STUDY OF N-(2-METHOXY-5- (4,4,5,5-TETRAMETHYL-1,3,2-DIOXABOROLAN-2-YL) PYRIDIN-3-YL)CYCLOPROPANESULFONAMIDE. J STRUCT CHEM+ 2021. [DOI: 10.1134/s0022476621100085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Deng H, Liao W, Tan X, Liu T. SYNTHESIS, CHARACTERIZATION, CRYSTAL STRUCTURE, AND DFT STUDY OF 3-BROMO-N- (3-FLUOROPHENYL)BENZENESULFONAMIDE. J STRUCT CHEM+ 2021. [DOI: 10.1134/s0022476621070131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Liu Y, Zhao Y, Ren Q, Zhou Z, Chai H, Zhao C. Synthesis, crystal structure and DFT study of a novel planar bipyridyl compound 6,6′-bis(trifluoromethyl)-3,3′-bipyridine. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.127869] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Kose E, Bardak F, Atac A. The investigation of fluorine substitution in difluoroanilines with focus on 2,6-difluoroaniline by spectroscopic methods, density functional theory approach, and molecular docking. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.06.038] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Sathish M, Meenakshi G, Xavier S, Sebastian S, Periandy S, Ahmad N, Jamalis J, Rosli M, Fun HK. Synthesis, molecular structure, Hirshfeld surface, spectral investigations and molecular docking study of 3-(5-bromo-2-thienyl)-1-(4-fluorophenyl)-3-acetyl-2-pyrazoline (2) by DFT method. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.03.004] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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8
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Kose E, Karabacak M, Bardak F, Atac A. Spectral investigations of 2,5-difluoroaniline by using mass, electronic absorption, NMR, and vibrational spectra. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.05.088] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Aloui Z, Ferretti V, Abid S, Lefebvre F, Rzaigui M, Ben Nasr C. Synthesis, crystal structure, and spectroscopic studies of organic–inorganic hybrid material: [C7H10NO]2BiBr5. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.04.036] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Haress NG, Govindarajan M, AL-Wabli RI, Almutairi MS, Al-Alshaikh MA, Al-Saadi AA, Attia MI. Spectroscopic (FT-IR, FT-Raman, UV, 1H and 13C NMR) profiling and theoretical calculations of (2E)-2-[3-(1H-imidazol-1-yl)-1-phenylpropylidene]hydrazinecarboxamide: An anticonvulsant agent. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.04.026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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11
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Prediction of molecular properties and spectroscopic profile of Riluzole with different functionals (B3LYP, M06-2X, MPWLYP): A combined theoretical and experimental study. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2015.10.088] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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12
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Hernández-Paredes J, Hernández-Negrete O, Carrillo-Torres RC, Sánchez-Zeferino R, Duarte-Moller A, Alvarez-Ramos ME. Experimental and theoretical investigation on the molecular structure, spectroscopic and electric properties of 2,4-dinitrodiphenylamine, 2-nitro-4-(trifluoromethyl)aniline and 4-bromo-2-nitroaniline. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 149:240-253. [PMID: 25965171 DOI: 10.1016/j.saa.2015.04.080] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Revised: 04/23/2015] [Accepted: 04/25/2015] [Indexed: 06/04/2023]
Abstract
2,4-Dinitrodiphenylamine (I), 2-nitro-4-(trifluoromethyl)aniline (II) and 4-bromo-2-nitroaniline (III) have been investigated by DFT and experimental FTIR, Raman and UV-Vis spectroscopies. The gas-phase molecular geometries were consistent with similar compounds already reported in the literature. From the vibrational analysis, the main functional groups were identified and their absorption bands were assigned. Some differences were found between the calculated and the experimental UV-Vis spectra. These differences were analyzed and explained in terms of the TD-DFT/B3LYP limitations, which were mainly attributed to charge-transfer (CT) effects. These findings were in agreement with previous works, which reported that TD-DFT/B3LYP calculations diverge from experimental results when the electronic transitions involve CT. Despite this, TD-DFT/B3LYP calculations provided satisfactory results and a detailed description of the electronic transitions involved in the absorption bands of the UV-Vis spectra. In terms of the NLO properties, it was found that compound (I) is a good candidate for NLO applications and deserves further study due to its good β values. However, the β values for compounds (II) and (III) were negatively affected compared to those found on o-nitroaniline.
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Affiliation(s)
- Javier Hernández-Paredes
- Departamento de Física, Universidad de Sonora (UNISON), Edificio 3R (Planta Alta) Blvd. Luis Encinas J y Rosales S/N Col. Centro, Hermosillo, Sonora C.P. 83000, Mexico.
| | - Ofelia Hernández-Negrete
- Departamento de Física, Universidad de Sonora (UNISON), Edificio 3R (Planta Alta) Blvd. Luis Encinas J y Rosales S/N Col. Centro, Hermosillo, Sonora C.P. 83000, Mexico
| | - Roberto C Carrillo-Torres
- Departamento de Física, Universidad de Sonora (UNISON), Edificio 3R (Planta Alta) Blvd. Luis Encinas J y Rosales S/N Col. Centro, Hermosillo, Sonora C.P. 83000, Mexico
| | - Raúl Sánchez-Zeferino
- Departamento de Física, Universidad de Sonora (UNISON), Edificio 3R (Planta Alta) Blvd. Luis Encinas J y Rosales S/N Col. Centro, Hermosillo, Sonora C.P. 83000, Mexico
| | - Alberto Duarte-Moller
- Centro de Investigación en Materiales Avanzados S. C. (CIMAV), Miguel de Cervantes 120, Chihuahua, Chihuahua C.P. 31109, Mexico
| | - Mario E Alvarez-Ramos
- Departamento de Física, Universidad de Sonora (UNISON), Edificio 3R (Planta Alta) Blvd. Luis Encinas J y Rosales S/N Col. Centro, Hermosillo, Sonora C.P. 83000, Mexico
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Kose E, Karabacak M, Atac A. The spectroscopic and quantum chemical studies of 3,4-difluoroaniline. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 143:265-280. [PMID: 25733254 DOI: 10.1016/j.saa.2015.01.079] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2014] [Revised: 01/15/2015] [Accepted: 01/29/2015] [Indexed: 06/04/2023]
Abstract
Spectroscopic and structural investigations of 3,4-difluoroaniline molecule are presented by using experimental (FT-IR, FT-Raman, (1)H and (13)C NMR, and UV-Vis) techniques and theoretical (DFT approach) calculations. FT-IR and FT-Raman spectra of 3,4-difluoroaniline molecule are recorded in the region 4000-400cm(-1) and 3500-10cm(-1) in the liquid phase, respectively. The NMR chemical shifts ((1)H and (13)C) are recorded in chloroform-d solution. The UV absorption spectra of 3,4-difluoroaniline dissolved in ethanol and water are recorded in the range of 200-400nm. Experimental results are supported with the following theoretical calculations; the optimized geometry and vibrational (FT-IR and FT-Raman) spectra are carried out by DFT (B3LYP)/6-311++G(d,p) basis set calculations. The nuclear magnetic resonance spectra ((1)H and (13)C NMR) are obtained by using the gauge-invariant atomic orbital method. Moreover, electronic characteristics, such as HOMO and LUMO energies, density of state diagrams, and molecular electrostatic potential surface are investigated. Nonlinear optical properties and thermodynamic features are also outlined theoretically. An excellent correlation of theoretical and experimental results provides a detailed description of the structural and physicochemical properties of the molecule. Thus, this work leads to a deep understanding of the characteristics of di-substituted aniline derivatives.
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Affiliation(s)
- Etem Kose
- Department of Physics, Celal Bayar University, Manisa, Turkey
| | - Mehmet Karabacak
- Department of Mechatronics Engineering, H.F.T. Technology Faculty, Celal Bayar University, Turgutlu, Manisa, Turkey
| | - Ahmet Atac
- Department of Physics, Celal Bayar University, Manisa, Turkey.
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Renuga Devi TS, Sharmi Kumar J, Ramkumaar GR. Quantum chemical studies on structural, vibrational, NBO and hyperpolarizability of N-(1,1-Dimethyl-2-hydroxyethyl)-3-amino-2-hydroxypropanesulfonic acid. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 136 Pt C:1500-1514. [PMID: 25459712 DOI: 10.1016/j.saa.2014.10.042] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2014] [Revised: 10/09/2014] [Accepted: 10/15/2014] [Indexed: 06/04/2023]
Abstract
The FTIR and FT-Raman spectra of N-(1,1-Dimethyl-2-hydroxyethyl)-3-amino-2-hydroxypropanesulfonic acid were recorded in the regions 4000-400cm(-1) and 4000-50cm(-1) respectively. The structural and spectroscopic data of the molecule in the ground state were calculated using Hartee-Fock and density functional method (B3LYP) with the correlation consistent-polarized valence double zeta (cc-pVDZ) basis set. The most stable conformer was optimized and the structural and vibrational parameters were determined based on this. With the observed FTIR and FT-Raman data, a complete vibrational assignment and analysis of the fundamental modes of the compound were carried out. Thermodynamic properties and Mulliken charges were calculated using both Hartee-Fock and density functional method using the cc-pVDZ basis set and compared. The calculated HOMO-LUMO energy gap revealed that charge transfer occurs within the molecule. (1)H and (13)C NMR chemical shifts of the molecule were calculated using Gauge Including Atomic Orbital (GIAO) method and were compared with experimental results. Stability of the molecule arising from hyperconjugative interactions and charge delocalization has been analyzed using Natural Bond Orbital (NBO) analysis. The first order hyperpolarizability (β) and Molecular Electrostatic Potential (MEP) of the molecule was computed using DFT calculations. The electron density based local reactivity descriptor such as Fukui functions were calculated to explain the chemical reactivity site in the molecule.
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Affiliation(s)
- T S Renuga Devi
- Department of Physics, Women's Christian College, College Road, Chennai 600006, TN, India.
| | - J Sharmi Kumar
- P.G. Department of Physics, Women's Christian College, College Road, Chennai 600006, TN, India; Department of Physics, Periyar University, Salem 636011, TN, India
| | - G R Ramkumaar
- Department of Physics, C. Kandaswami Naidu College for Men in Anna Nagar East, Chennai 600102, TN, India
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Gökce H, Bahçeli S. Spectroscopic and quantum chemical studies on bromopyrazone. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 133:741-751. [PMID: 24996217 DOI: 10.1016/j.saa.2014.06.025] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2014] [Revised: 05/20/2014] [Accepted: 06/03/2014] [Indexed: 06/03/2023]
Abstract
In this study, the FT-IR, micro-Raman and UV-vis. spectra of bromopyrazone molecule, C10H8BrN3O, (with synonym,1-phenyl-4-amino-5-bromopyridazon-(6) or 5-amino-4-bromo-2-phenyl-3(2H)-pyridazinone) were recorded experimentally. The molecular structure, vibrational wavenumbers, electronic transition absorption wavelengths in ethanol solvent, HOMOs and LUMOs analyses, molecular electrostatic potential (MEP), natural bond orbitals (NBO), nonlinear optical (NLO) properties and atomic charges of bromopyrazone molecule have been calculated by using DFT/B3LYP method with 6-311++G(d,p) basis set in ground state. The obtained results show that the calculated vibrational frequencies and UV-vis. values are in a good agreement with experimental data.
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Affiliation(s)
- Halil Gökce
- Vocational High School of Health Services, Giresun University, Güre Campus, 28200 Giresun, Turkey
| | - Semiha Bahçeli
- Süleyman Demirel University, Faculty of Arts and Sciences, Physics Department, Çünür East Campus, 32260 Isparta, Turkey.
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