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Karim A, Ullah N, Iqbal M, Malekshah RE, Ali S, Hsu SCN. In silico drug encapsulation using 2-hydroxypropyl-β-CD, tyrosine kinase and tyrosinase inhibition of dinuclear Cu(II) carboxylate complexes. J Mol Graph Model 2025; 134:108903. [PMID: 39541649 DOI: 10.1016/j.jmgm.2024.108903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Revised: 10/29/2024] [Accepted: 11/03/2024] [Indexed: 11/16/2024]
Abstract
In recent years, copper carboxylate complexes have garnered significant interest for biological applications. This study focuses on 20 Cu(II) carboxylate complexes selected from our previous research. Due to the hydrophobic nature of these complexes, the 2-hydroxypropyl-β-cyclodextrin (2HPβCD) was employed as a carrier to reduce toxicity and increase solubility for controlling drug delivery. Monte Carlo calculations were performed to confirm the interaction between the optimized structures of Cu(II) complexes and 2HPβCD, forming a host-guest system. All the structures were simulated and optimized using DFT-D calculations in Material Studio 2017. The results indicated that a neutral medium is more favorable for the adsorption of these complexes into 2HPβCD. More negative binding energy values suggested strong and energetically favorable adsorption on 2HPβCD. Complexes 4, 5, and 7 exhibited the highest interaction, making them excellent candidates for drug delivery systems. DFT-D calculations were also used to investigate the release of complexes, revealing that complexes 5, 14, and 19 were difficult to release due to their lowest energy. In contrast, complexes 8, 9, and 16 were found to be most efficient to release due to weak non-covalent interactions with 2HPβCD as we can predict from binding energy obtained by DFT-D. No specific trend was observed in the interaction of the complexes with 2HPβCD. Additionally, the effects of these complexes on c-kit tyrosine kinase and Mushroom tyrosinase were studied by molecular docking. The results demonstrated that all the complexes interacted with the active site of respective receptors through hydrophobic interactions. Complexes containing 1,10-phenanthroline and 2,2-bipyrdine were identified as having a strong, spontaneous binding ability with receptors.
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Affiliation(s)
- Amir Karim
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung 80708, Taiwan; Department of Chemistry Bacha Khan University Charsadda 24420, KPK, Pakistan
| | - Najeeb Ullah
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung 80708, Taiwan; Department of Chemistry Bacha Khan University Charsadda 24420, KPK, Pakistan
| | - Muhammad Iqbal
- Department of Chemistry Bacha Khan University Charsadda 24420, KPK, Pakistan
| | - Rahime Eshaghi Malekshah
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung 80708, Taiwan; Department of Chemistry, Semnan University, Semnan, Iran.
| | - Saqib Ali
- Department of Chemistry Quaid-i-Azam University Islamabad 45320, Pakistan
| | - Sodio C N Hsu
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung 80708, Taiwan; Department of Medical Research, Kaohsiung Medical University Hospital, Kaohsiung 80708, Taiwan
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2
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Muley A, Kumbhakar S, Raut R, Mathur S, Roy I, Saini T, Misra A, Maji S. Mononuclear copper(II) complexes with polypyridyl ligands: synthesis, characterization, DNA interactions/cleavages and in vitro cytotoxicity towards human cancer cells. Dalton Trans 2024; 53:11697-11712. [PMID: 38912924 DOI: 10.1039/d4dt00984c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/25/2024]
Abstract
DNA being the necessary element in cell regeneration, controlled cellular apoptosis via DNA binding/cleaving is considered an approach to combat cancer cells. The widely prescribed metallodrug cisplatin has shown interactions with the guanine-N7 center, and a plethora of complexes are continually developed to enhance crosslinking properties as well as covalent and non-covalent interactions. Two pentadentate ligands, L1 (1-(6-(1H-benzo[d]imidazol-2-yl)pyridin-2-yl)-N,N-bis(pyridin-2-ylmethyl)methanamine) and L2 (1-(6-(1-methyl-1H-benzo[d]imidazol-2-yl)pyridin-2-yl)-N,N-bis(pyridin-2-ylmethyl)methanamine), were synthesized together with their respective copper(II) complexes [1](ClO4)2 and [2](ClO4)2, which crystallized in a trigonal bipyramidal fashion. Different analytical and spectroscopic methods confirmed their formation, and their redox behaviour was also examined. The interactions of salmon sperm DNA (ss-DNA) with these two complexes were explored using absorbance spectroscopy, and they both exhibited a binding affinity (Kb) of ∼104 M-1. Fluorescence quenching experiments with ethidium bromide (EB)-bound DNA (EB-DNA) were also performed, and Stern-Volmer constant (KSV) values of 6.93 × 103 and 2.34 × 104 M-1 for [1](ClO4)2 and [2](ClO4)2, respectively, were obtained. Furthermore, DNA conformational changes due to the interactions of both complexes were validated via circular dichroism. We also assessed the DNA cleavage property of these complexes, which resulted in the linearization of circular plasmid DNA. This finding was supported by studying the growth of MDA-MB-231 breast cancer cells upon treatment with both Cu(II) complexes; IC50 values of 5.34 ± 1.02 μM and 0.83 ± 0.18 μM were obtained for [1](ClO4)2 and [2](ClO4)2, respectively. This validates their affinity towards DNA, and these insights can be further utilized for non-platinum based economical metallodrug development based on first row transition metals.
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Affiliation(s)
- Arabinda Muley
- Department of Chemistry, Indian Institute of Technology, Hyderabad, Kandi, Sangareddy 502284, Telangana, India.
| | - Sadananda Kumbhakar
- Department of Chemistry, Indian Institute of Technology, Hyderabad, Kandi, Sangareddy 502284, Telangana, India.
| | - Rajnikant Raut
- Department of Biotechnology, Indian Institute of Technology, Hyderabad, Kandi, Sangareddy 502284, Telangana, India.
| | - Shobhit Mathur
- Department of Chemistry, Indian Institute of Technology, Hyderabad, Kandi, Sangareddy 502284, Telangana, India.
| | - Indrajit Roy
- Department of Chemistry, Indian Institute of Technology, Hyderabad, Kandi, Sangareddy 502284, Telangana, India.
| | - Taruna Saini
- Department of Biotechnology, Indian Institute of Technology, Hyderabad, Kandi, Sangareddy 502284, Telangana, India.
| | - Ashish Misra
- Department of Biotechnology, Indian Institute of Technology, Hyderabad, Kandi, Sangareddy 502284, Telangana, India.
| | - Somnath Maji
- Department of Chemistry, Indian Institute of Technology, Hyderabad, Kandi, Sangareddy 502284, Telangana, India.
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3
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Karumban KS, Raut R, Gupta P, Muley A, Giri B, Kumbhakar S, Misra A, Maji S. Mononuclear cobalt(II) complexes with polypyridyl ligands: Synthesis, characterization, DNA interactions and in vitro cytotoxicity towards human cancer cells. J Inorg Biochem 2022; 233:111866. [DOI: 10.1016/j.jinorgbio.2022.111866] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Revised: 04/28/2022] [Accepted: 05/17/2022] [Indexed: 02/02/2023]
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4
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Karumban KS, Muley A, Raut R, Gupta P, Giri B, Kumbhakar S, Misra A, Maji S. Mononuclear Co(II) polypyridyl complexes: synthesis, molecular structure, DNA binding/cleavage, radical scavenging, docking studies and anticancer activities. Dalton Trans 2022; 51:7084-7099. [DOI: 10.1039/d1dt04144d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Mononuclear Co(II) complexes [CoII(L)Cl2]; 1, [CoII(L)(bpy)Cl]PF6; 2, [CoII(L)(phen)Cl]PF6; 3 and [CoII(L)(pic)Cl]; 4, (where L = N,N-bis(pyridin-2-ylmethyl)aniline, bpy = 2,2/-bipyridine, phen = 1,10-phenanthroline, pic = picolinic acid) were systematically synthesized and...
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5
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Synthesis, crystal structures, Hirshfeld surface analysis, theoretical insight and molecular docking studies of dinuclear and triply bridged Cu(II) carboxylate complexes with 2,2′-bipyridine or 1,10-phenanthroline. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115502] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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6
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Sharma P, Dutta D, Gomila RM, Frontera A, Barcelo-Oliver M, Verma AK, Bhattacharyya MK. Benzoato bridged dinuclear Mn(II) and Cu(II) compounds involving guest chlorobenzoates and dimeric paddle wheel supramolecular assemblies: Antiproliferative evaluation and theoretical studies. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115409] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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7
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Li X, Liang H, Yang YO, Wang X, Zhang J, Wang D, Sun F, Du Y. Synthesis of Spiro[benzofuran‐2,2'‐benzo[
b
]thiophene]‐3,3'‐diones via PIDA/CuBr‐Mediated Spirocyclization. European J Org Chem 2020. [DOI: 10.1002/ejoc.202001001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Xuemin Li
- School of Pharmaceutical Science and Technology Tianjin University 300072 Tianjin China
| | - Huiyuan Liang
- School of Pharmaceutical Science and Technology Tianjin University 300072 Tianjin China
| | - Yaxin O Yang
- School of Pharmaceutical Science and Technology Tianjin University 300072 Tianjin China
| | - Xi Wang
- School of Pharmaceutical Science and Technology Tianjin University 300072 Tianjin China
| | - Jingran Zhang
- School of Pharmaceutical Science and Technology Tianjin University 300072 Tianjin China
| | - Donghua Wang
- School of Pharmaceutical Science and Technology Tianjin University 300072 Tianjin China
| | - Fengxia Sun
- College of Chemical and Pharmaceutical Engineering Hebei Research Center of Pharmaceutical and Chemical Engineering Hebei University of Science and Technology 050018 Shijiazhuang China
| | - Yunfei Du
- School of Pharmaceutical Science and Technology Tianjin University 300072 Tianjin China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin) 300072 Tianjin China
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Arif R, Rana M, Yasmeen S, Amaduddin, Khan MS, Abid M, Khan M, Rahisuddin. Facile synthesis of chalcone derivatives as antibacterial agents: Synthesis, DNA binding, molecular docking, DFT and antioxidant studies. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.127905] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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9
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Özbek FE, Sertçelik M, Yüksek M, Uğurlu G, Tonbul AM, Necefoğlu H, Hökelek T. Synthesis and Crystallographic, Absorption and Emission Studies of 4-Pyridine Carboxamide of Zn(II) 4-Chlorophenylacetate. J Fluoresc 2019; 29:1265-1275. [PMID: 31646413 DOI: 10.1007/s10895-019-02440-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Accepted: 09/10/2019] [Indexed: 11/26/2022]
Abstract
A new zinc(II) complex, [Zn(CB)2(INA)2] (where CB is 4-chlorophenylacetate and INA is 4-pyridine carboxamide) was synthesized. The structure of the complex was characterized by elemental analysis, FT-IR spectroscopy and single-crystal X-ray diffraction technique. Besides, the thermal stability of the complex was investigated by TGA/DTA analysis method. Moreover, the optical absorption and the emission features of the complex were examined by using UV-Vis and fluorescence spectrophotometers, respectively. Furthermore, Density Functional Theory (DFT) calculations were carried out to support the experimental results. Accordingly, it was determined that the complex crystallized in a monoclinic system with space group Pc, a = 8.3329 (2) Å, b = 25.6530 (4) Å, c = 13.5048 (3) Å, α = 90°, β = 91.703 (3)° and γ = 90°. The complex consists two crystallographically independent molecules. In each molecule, the ZnII ion adopts a distorted trigonal pyramidal coordination formed by two O atoms from the two 4 chlorophenylacetate ligand and two N atoms of the two 4-pyridine carboxamide ligands. It was observed that the linear absorption spectra of the complex were similar to linear absorption spectra of the semiconductors. In addition, two emission peaks were observed in the fluorescence spectra which could be due to the formation of excimer and the interactions of the benzene and pyridine rings. The energy gap (ΔEgap = ELUMO - EHOMO) of the complex has been calculated as 3.712 eV and this value is very close to the experimentally measured value (3.86 eV). Therefore, because of higher fluorescence intensity of emission peak that was observed between 309 and 556 nm wavelength besides other traits, the complex could potentially be used in the blue light OLED application by filtering of the emission peak around 710 nm wavelength. Graphical Abstract It was reported synthesis and spectroscopic, structural and optical characterization of a new complex that is Zn(II) of 4-Chlorophenylacetate with isonicotinamide. The complex characterized by elemental analysis, Single crystal X-ray diffraction and FT-IR Spectroscopy. Thermal stabilities of the complex have also been investigated. The studying of the optical absorption and fluorescence spectra of the prepared complex is very important for the determination of the optical application areas. The fluorescence measurements showed that these materials are much suitable for application area of the detection of nitroaromatic explosives. In addition to the Density Functional Theory (DFT) calculations were carried out to support the experimental results. It was reported synthesis and spectroscopic, structural and optical characterization of a new complex that is Zn(II) of 4-Chlorophenylacetate with isonicotinamide. The complex characterized by elemental analysis, Single crystal X-ray diffraction and FT-IR Spectroscopy. Thermal stabilities of the complex have also been investigated. The studying of the optical absorption and fluorescence spectra of the prepared complex is very important for the determination of the optical application areas. In addition to the Density Functional Theory (DFT) calculations were carried out to support the experimental results.
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Affiliation(s)
- Füreya Elif Özbek
- Department of Chemical Engineering, Kafkas University, 36100, Kars, Turkey.
| | - Mustafa Sertçelik
- Department of Chemical Engineering, Kafkas University, 36100, Kars, Turkey
| | - Mustafa Yüksek
- Department of Electrical and Electronic Engineering, Kafkas University, 36100, Kars, Turkey
| | | | | | - Hacali Necefoğlu
- Department of Chemistry, Kafkas University, 36100, Kars, Turkey
- International Scientific Research Centre, Baku State University, 1148, Baku, Azerbaijan
| | - Tuncer Hökelek
- Department of Physics, Hacettepe University, 06800, Beytepe, Ankara, Turkey
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10
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Synthesis, DNA Binding, and Molecular Docking Studies of Dimethylaminobenzaldehyde-Based Bioactive Schiff Bases. J CHEM-NY 2019. [DOI: 10.1155/2019/8152721] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
A new series of p-dimethylaminobenzaldehyde derivatives were tested for therapeutic potential by exploring their properties through characterization. The derivatives were synthesized by 1 : 1 condensation reaction of p-dimethylaminobenzaldehyde and substituted amines. The synthesized compounds 1–8 were characterized by different characterization techniques including IR, mass, 1H NMR, and 13C NMR spectroscopy, elemental analysis, and mass spectrometry. Furthermore, binding of these Schiff bases to Ct-DNA was examined by absorption spectroscopy, fluorescence quenching, circular dichroic, viscosity measurement, molecular docking, and molecular dynamics simulation methods. Schiff bases were tested for antimicrobial activity against bacterial species Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Staphylococcus aureus by the disc diffusion method. The pharmacological treatment of Schiff bases showed that 1–8 have promising potential against tested bacterial strains. The molecular docking study of the target compounds was also carried out against B-DNA dodecamer d(CGCGAATTCGCG)2, and it has been found that 1–8 can bind to Ct-DNA via an intercalative mode. DPPH free radical and hydrogen peroxide scavenging assays were employed to assess the antioxidant potential of synthesized Schiff bases.
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11
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Mo X, Chen Z, Chu B, Liu D, Liang Y, Liang F. Structure and anticancer activities of four Cu(ii) complexes bearing tropolone. Metallomics 2019; 11:1952-1964. [DOI: 10.1039/c9mt00165d] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The title Cu(ii) complexes of tropolone induce the apoptosis of MGC80-3 through a caspase-dependent mitochondrion pathway and can also induce autophagy.
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Affiliation(s)
- Xiyu Mo
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources
- School of Chemistry and Pharmaceutical Sciences
- Guangxi Normal University
- Guilin 541004
- P. R. China
| | - Zilu Chen
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources
- School of Chemistry and Pharmaceutical Sciences
- Guangxi Normal University
- Guilin 541004
- P. R. China
| | - Bo Chu
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources
- School of Chemistry and Pharmaceutical Sciences
- Guangxi Normal University
- Guilin 541004
- P. R. China
| | - Dongcheng Liu
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources
- School of Chemistry and Pharmaceutical Sciences
- Guangxi Normal University
- Guilin 541004
- P. R. China
| | - Yuning Liang
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources
- School of Chemistry and Pharmaceutical Sciences
- Guangxi Normal University
- Guilin 541004
- P. R. China
| | - Fupei Liang
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources
- School of Chemistry and Pharmaceutical Sciences
- Guangxi Normal University
- Guilin 541004
- P. R. China
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12
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Mitrofanov AY, Rousselin Y. Crystal structure of di-μ-hydroxido-bis-{aqua-[ethyl (1,10-phenanthrolin-3-yl)phospho-nato-κ 2 N, N']copper(II)} hepta-hydrate. Acta Crystallogr E Crystallogr Commun 2018; 74:1751-1754. [PMID: 30574368 PMCID: PMC6281120 DOI: 10.1107/s2056989018015724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2018] [Accepted: 11/06/2018] [Indexed: 11/10/2022]
Abstract
In the title compound, [Cu2(OH)2{C12H7N2(PO3C2H5)}2(H2O)2]·7H2O, two Cu2+ cations are bridged by two hydroxide groups, forming a centrosymmetric binuclear complex. Each Cu2+cation is further coordinated by the N atoms of a bidentate ethyl (1,10-phenanthrolin-3-yl)phospho-nate anion and a water mol-ecule in a square-pyramidal geometry. In the crystal, a network of O-H⋯O hydrogen bonds involving the P(O)(O-)(OEt) groups, bridging hydroxyl groups, coordinated and uncoordinated water mol-ecules generates a three-dimensional supra-molecular structure. The ethyl group exhibits disorder and was modelled over three sites with occupancies of 0.455, 0.384 and 0.161.
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Affiliation(s)
- Alexander Yu. Mitrofanov
- Department of Chemistry, Moscow State University, Leninskie Gory, GSP-3, Moscow 119991, Russian Federation
| | - Yoann Rousselin
- ICMUB, UMR CNRS 6302, Université Bourgogne Franche-Comté, 9 avenue Alain Savary, 21078 Dijon cedex, France
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Golovnev NN, Molokeev MS, Sterkhova IV, Lesnikov MK. Crystal structures of [Cu2(2,2′-bipyridine-N,N′)2(H2O)2(μ2-OH)2](barbiturate)2·2H2O and [Cu(2,2′-bipyridine-N,N′)(H2O)(barbiturate-O)Cl]·2H2O. INORG CHEM COMMUN 2018. [DOI: 10.1016/j.inoche.2018.09.011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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14
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Synthesis, molecular docking and DNA binding studies of phthalimide-based copper(II) complex: In vitro antibacterial, hemolytic and antioxidant assessment. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.02.008] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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15
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Polymeric Copper(II) Paddlewheel Carboxylate: Structural Description, Electrochemistry, and DNA-binding Studies. Z Anorg Allg Chem 2018. [DOI: 10.1002/zaac.201700375] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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