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Al-Mutairi AA, Mary YS, Mary YS, Soman S, Hassan HM, Al-Alshaikh MA, El-Emam AA. Spectroscopic, Docking and MD Simulation Analysis of an Adamantane Derivative with Solvation Effects in Different Solvents. Polycycl Aromat Compd 2023; 43:4203-4215. [DOI: 10.1080/10406638.2022.2086274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 05/24/2022] [Indexed: 10/18/2022]
Affiliation(s)
- Aamal A. Al-Mutairi
- Department of Chemistry, College of Sciences, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh, Saudi Arabia
| | | | | | - Sreejit Soman
- Stemskills Research and Education Lab Private Limited, Faridabad, Hariyana, India
| | - Hanan M. Hassan
- Department of Pharmacology and Biochemistry, Faculty of Pharmacy, Delta University for Science and Technology, Gamasa City, Egypt
| | - Monirah A. Al-Alshaikh
- Department of Chemistry, College of Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Ali A. El-Emam
- Department of Medicinal Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura, Egypt
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Al-Wahaibi LH, Abdalla M, Mary YS, Mary YS, Costa RA, Rana M, El-Emam AA, Hassan HM, Al-Shaalan NH. Spectroscopic, Solvation Effects and MD Simulation of an Adamantane-Carbohydrazide Derivative, a Potential Antiviral Agent. Polycycl Aromat Compd 2023; 43:2056-2070. [DOI: 10.1080/10406638.2022.2039233] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Accepted: 01/28/2022] [Indexed: 12/16/2022]
Affiliation(s)
- Lamya H. Al-Wahaibi
- Department of Chemistry, College of Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Mohnad Abdalla
- Key Laboratory of Chemical Biology (Ministry of Education), Department of Pharmaceutics, School of Pharmaceutical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, P.R. China
| | | | | | - Renyer Alves Costa
- Department of Chemistry, Federal University of Amazonas (DQ-UFAM), Manaus, Brazil
| | - Meenakshi Rana
- Department of Physics, School of Sciences, Uttarakhand Open University, Haldwani, India
| | - Ali A. El-Emam
- Department of Medicinal Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura, Egypt
| | - Hanan M. Hassan
- Department of Pharmacology and Biochemistry, Faculty of Pharmacy, Delta University for Science and Technology, International Costal Road, Gamasa City, Mansoura, Egypt
| | - Nora H. Al-Shaalan
- Department of Chemistry, College of Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
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Covalent interaction, solvent effects, electrochemical, and spectroscopic characterization of novel (4Z)-4-{2-[amino(hydroxy)methyl]hydrazinylidene}-2,6-di(furan-2-yl)-3-methylpiperidin-1-ol(4a) derivative- Anti-microbial activity study. J Mol Liq 2023. [DOI: 10.1016/j.molliq.2023.121272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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4
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Intermolecular interaction study of Ag-amino acid biomolecular complex using vibrational spectroscopic techniques and density functional theory method. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Synthesis, experimental antimicrobial activity, theoretical vibrational analysis, quantum chemical modeling and molecular docking studies of (E)-4-(benzylideneamino)benzenesulfonamide. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133187] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Computational Study of Furosemide-Piperazine (FS – PZ) and 2,3,5,6-tetramethylpyrazine (FS-TP) Co-Crystals. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119537] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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Selvakumari S, Venkataraju C, Muthu S, Irfan A, Shanthi D. Donor acceptor groups effect, polar protic solvents influence on electronic properties and reactivity of 2-Chloropyridine-4-carboxylic acid. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Al-Wahaibi LH, Mary YS, Shyma Mary Y, Al-Mutairi AA, Hassan HM, El-Emam AA, Yadav R. Investigation of the electronic properties of solvents (water, benzene, methanol) using IEFPCM model, spectroscopic investigation with docking and MD simulations of a thiadiazole derivative with anti-tumor activities. J Mol Liq 2022; 348:118061. [DOI: 10.1016/j.molliq.2021.118061] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Chetry N, Gomti Devi T, Karlo T. Synthesis and characterization of metal complex amino acid using spectroscopic methods and theoretical calculation. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131670] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Sowrirajan S, Elangovan N, Ajithkumar G, Manoj KP. (E)-4-((4-Bromobenzylidene) Amino)-N-(Pyrimidin-2-yl) Benzenesulfonamide from 4-Bromobenzaldehyde and Sulfadiazine, Synthesis, Spectral (FTIR, UV–Vis), Computational (DFT, HOMO–LUMO, MEP, NBO, NPA, ELF, LOL, RDG) and Molecular Docking Studies. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2021.2006245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- S. Sowrirajan
- Department of Chemistry, King Fahd University of Petroleum and Minerals, Kingdom of Saudi Arabia
| | - N. Elangovan
- Department of Chemistry, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Musiri, Tiruchirappalli, Tamil Nadu, India
| | - G. Ajithkumar
- Department of Chemistry, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Musiri, Tiruchirappalli, Tamil Nadu, India
| | - K. P. Manoj
- Department of Chemistry, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Musiri, Tiruchirappalli, Tamil Nadu, India
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Evaluation of electronic properties in different solvents, spectroscopic exposition (FT-IR, FT-Raman), and molecular docking studies of 5-Chloro-2-hydroxypyridine - insulysin inhibitor. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.117304] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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12
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Spectroscopic (FT-IR, Raman) analysis and computational study on conformational geometry, AIM and biological activity of cephalexin from DFT and molecular docking approach. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130594] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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13
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Elangovan N, Sowrirajan S. Synthesis, single crystal (XRD), Hirshfeld surface analysis, computational study (DFT) and molecular docking studies of (E)-4-((2-hydroxy-3,5-diiodobenzylidene)amino)-N-(pyrimidine)-2-yl) benzenesulfonamide. Heliyon 2021; 7:e07724. [PMID: 34458601 PMCID: PMC8379672 DOI: 10.1016/j.heliyon.2021.e07724] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 07/14/2021] [Accepted: 08/03/2021] [Indexed: 12/15/2022] Open
Abstract
The Schiff base (E)-4-((2-hydroxy-3,5-diiodobenzylidene)amino)-N-(pyrimidine)-2-yl) benzene sulfonamide (DIDA) compound was synthesis with condensation of 3,5-diiodosalicylaldehyde and sulfadiazine. The compound characterized with FTIR, X-ray crystallography and electronic spectra. The titled compound associated with experimental and theoretical method, DFT used for the theoretical method. The IR was calculated from DFT mode with B3LYP/GENSEP basic set. The electronic spectra computed from TD-DFT method with CAM-B3LYP functional, with IEFPCM solvation model and DMSO used as the solvent. Wave function based properties like localized orbital locator, electron localization function and non-covalent interactions have been studied extensively. The ADMET properties of the compound DIDA indicated that the compound has excellent drug likeness properties and PASS studies showed that it has anti-infective properties, which is confirmed by a docking score of -7.4 kcal/mol.
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Affiliation(s)
- N Elangovan
- Department of Chemistry, Arignar Anna Government Arts College, Musiri 621211, Bharathidasan University, Tiruchirappalli, Tamilnadu, India
| | - S Sowrirajan
- Department of Chemistry, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
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Mary YS, Mary YS. DFT Analysis and Molecular Docking Studies of the Cocrystals of Sulfathiazole-Theophylline and Sulfathiazole-Sulfanilamide. Polycycl Aromat Compd 2021. [DOI: 10.1080/10406638.2021.1873809] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Sevvanthi S, Muthu S, Raja M, Aayisha S, Janani S. PES, molecular structure, spectroscopic (FT-IR, FT-Raman), electronic (UV-Vis, HOMO-LUMO), quantum chemical and biological (docking) studies on a potent membrane permeable inhibitor: dibenzoxepine derivative. Heliyon 2020; 6:e04724. [PMID: 32885075 PMCID: PMC7452420 DOI: 10.1016/j.heliyon.2020.e04724] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 07/11/2020] [Accepted: 08/11/2020] [Indexed: 01/06/2023] Open
Abstract
The dibenzoxepines derivatives have found a broad application in biological and pharmaceutical fields as new prospective drugs. So, the molecule (3aS,12bS)-5-Chlor-2-methyl-2,3,3a,12b-tetrahydro-1H-dibenzo[2,3:6,7]oxepino[4,5-c]pyrrol has been characterized by DFT (Density Functional Theory) approach to predict the important properties of it. The minimum energy conformer has been found by PES (Potential Energy Surface) and then the structure is optimized. Further, the structure is characterized spectroscopically by FT-IR and FT-Raman techniques to know the functional group and chemically active atoms. The geometrical parameters, PED (Potential Energy Distribution) assignments have also been reported. The electronic properties of the title compound have been explained by UV-Vis and HOMO-LUMO analyses that describe the charge transfer between the atoms of the molecule. Molecular Electrostatic Potential (MEP), Electron Localization Function (ELF) and Localized Orbital Locator (LOL) have been depicted to know the chemically active regions. The electrophilic and nucleophilic regions have been shown by Fukui functions. The Non-Linear Optics (NLO) for non-linear optical effects and the Natural Bond Orbital (NBO) for charge delocalization were studied. To study the biological activity of the title compound, molecular docking has been performed which suggests that the title molecule may act as a membrane permeable inhibitor.
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Affiliation(s)
- S Sevvanthi
- Department of Physics, Arignar Anna Govt. Arts College, Cheyyar, 604407, Tamilnadu, India.,Thiruvalluvar University, Serkkadu, Vellore, 632 115, Tamilnadu, India
| | - S Muthu
- Department of Physics, Arignar Anna Govt. Arts College, Cheyyar, 604407, Tamilnadu, India.,Department of Physics, Puratchi Thalaivar Dr M.G.R Govt Arts and Science College, Uthiramerur, 603406, Tamilnadu, India
| | - M Raja
- Department of Physics, Govt Thirumagal Mills College, Gudiyattam, 632602, Vellore, Tamilnadu, India
| | - S Aayisha
- Department of Physics, Meenakshi College for Women, Chennai, 600024, Tamilnadu, India
| | - S Janani
- Department of Physics, Queen Mary's College, Chennai 600005, Tamilnadu, India
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16
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Co-crystals of urea and hexanedioic acid with third-order nonlinear properties: An experimental and theoretical enquiry. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127237] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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17
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Influence of acetyl, hydroxy and methyl functional groups on 2-phenylbutanoic acid by quantum computational, spectroscopic and ligand-protein docking studies. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.03.093] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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18
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Thomas R, Mary YS, Resmi K, Narayana B, Sarojini B, Vijayakumar G, Van Alsenoy C. Two neoteric pyrazole compounds as potential anti-cancer agents: Synthesis, electronic structure, physico-chemical properties and docking analysis. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.01.003] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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19
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Sevvanthi S, Muthu S, Raja M. Molecular docking, vibrational spectroscopy studies of (RS)-2-(tert-butylamino)-1-(3-chlorophenyl)propan-1-one: A potential adrenaline uptake inhibitor. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.07.001] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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20
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Hosna S, Janzen DE, Mary YS, Resmi KS, Thomas R, Mohamed R, Wajda S. Molecular structure, spectroscopic, dielectric and thermal study, nonlinear optical properties, natural bond orbital, HOMO-LUMO and molecular docking analysis of (C 6Cl 2O 4) (C 10H 14N 2F) 2·2H 2O. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 204:328-339. [PMID: 29957411 DOI: 10.1016/j.saa.2018.06.062] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2018] [Revised: 05/22/2018] [Accepted: 06/17/2018] [Indexed: 06/08/2023]
Abstract
A new chloranilate compound with 1-(2-fluorophenyl)piperazine has been synthesized and characterized using spectroscopic methods and X-ray diffraction. The atomic arrangement can be described by an H-bonded 3D network, formed by anionic entities, organic cations and H2O molecules linked together via NH…O, OH…Cl, CH…Cl and CH…O hydrogen bonds. The vibrational absorption bands of the various characteristic groups of this compound have been identified by infrared spectroscopy. Moreover, the thermal and dielectric analyses have shown that the title compound has a phase transition at 393 K. The surface mapped over the dnorm property, highlights the A⋯H (AO, C, Cl and F) as the main intermolecular contacts. On the other hand, the geometry, intermolecular bonds and harmonic vibrational frequencies of the title molecule have been investigated using the B3LYP/6-31G (d, p) method. The stability of the structure obtained, as well as the charge transfer within the molecule, have been confirmed by determining the energies of the HOMO and LUMO levels and the theoretical gap energy. Molecular docking studies of the title compound have also been conducted as part of this study.
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Affiliation(s)
- Saadouni Hosna
- Laboratory of Chemical Materials, Faculty of Sciences of Bizerte, Carthage University, Zarzouna, Tunisia
| | - Daron E Janzen
- Department of Chemistry and Biochemistry, St Catherine University, St Paul, MN, USA
| | - Y Sheena Mary
- Department of Physics, Fatima Mata National College, Kollam, Kerala, India
| | - K S Resmi
- Department of Physics, Fatima Mata National College, Kollam, Kerala, India
| | - Renjith Thomas
- Department of Chemistry, St. Berchmans College (Autonomous), Changanacherry, Kerala, India
| | - Rzaigui Mohamed
- Laboratory of Chemical Materials, Faculty of Sciences of Bizerte, Carthage University, Zarzouna, Tunisia
| | - Smirani Wajda
- Laboratory of Chemical Materials, Faculty of Sciences of Bizerte, Carthage University, Zarzouna, Tunisia.
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