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Divya P, Jeba Reeda VS, Suja R, Bena Jothy V. Structural activity, spectroscopic, Fukui, NCI, AIM, IGM combined with molecular docking and molecular dynamics simulation on 4-methylpyridinium 4-hydroxybenzoate-potent drug anti-leukemia cancer. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 306:123568. [PMID: 39492382 DOI: 10.1016/j.saa.2023.123568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 09/13/2023] [Accepted: 10/19/2023] [Indexed: 11/05/2024]
Abstract
4-Methylpyridinium 4-hydroxybenzoate (4MPH) has been investigated using calculations involving quantum chemical computations. Conformer using least energy had been found to be highly accurate by performing a PES. For 4MPH, charge transfers are predicted using NBO and HOMO-LUMO technique. NBO assessment has resulted in to evaluate the significant donor-acceptor interactions, such as n1(N13) → σ*(H15-O29), which has the greatest stabilisation energy of 17.09 kcal/mol. O29-H15…N13 considerably influenced in topological analysis (AIM, ELF, and LOL, RDG, IGM), that demonstrates favourable findings. MEP, fukui, and NPA offer a comprehensive picture of the buildup residing charged particles on every single element within a molecule, leading to identification of electrophilic and nucleophilic locations. The outcomes of molecular docking showed how successful the ligand under investigation is as a leukemia treatment confirmed the stability through molecular dynamics simulation (MDS). While biological score prediction and similarity to drugs has been employed as evidence for biological characteristics. Since 4MPH follows Lipinski's rule of five, it shouldn't be problematic to take oral doses of comparable drugs.
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Affiliation(s)
- P Divya
- Department of Physics, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences (SIMATS), Chennai, India.
| | - V S Jeba Reeda
- Department of Physics and Research Centre, Women's Christian College, Nagercoil-629001, Tamil Nadu, India; Affiliated to Manonmaniam Sundaranar University, Abishekapatti-627012, Tirunelveli, Tamil Nadu, India
| | - R Suja
- Department of Physics and Research centre, Muslim Arts College, Tiruvithancode, Tamil Nadu 629174, India; Affiliated to Manonmaniam Sundaranar University, Abishekapatti-627012, Tirunelveli, Tamil Nadu, India
| | - V Bena Jothy
- Department of Physics and Research centre, Women's Christian College, Nagercoil-629001, Tamil Nadu, India; Affiliated to Manonmaniam Sundaranar University, Abishekapatti-627012, Tirunelveli, Tamil Nadu, India
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W. A, Dhas DA, Balachandran S, I. HJ. Structural, Spectroscopic, and C-H…O Hydrogen Bonding Interaction on Structure (Monomer and Dimer) Vibrational Spectroscopic, Fukui, NCI, AIM, and RDG Analysis Molecular Docking and Molecular Dynamic Simulation of Biological Active Pencycuron. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2149563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Abisha W.
- Manonmaniam Sundaranar University, Tirunelveli, Tamil Nadu, India
- Department of Physics and Research Centre, Nesamony Memorial Christian College, Marthandam, India
| | - D. Arul Dhas
- Department of Physics and Research Centre, Nesamony Memorial Christian College, Marthandam, India
| | - S. Balachandran
- Department of Chemistry, NSS College Ottapalam, Palakkad, India
| | - Hubert Joe I.
- Department of Physics, Centre for Molecular and Biophysics Research, Mar Ivanios College, Thiruvananthapuram, India
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Copper(II) chelates derived from an N,N,O-tridentate 2-pyridinecarboxaldehyde-N4-phenylsemicarbazone: Synthesis, spectral aspects, crystal structure, FMO and NBO analysis. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Salah N, Emara AAA, Adly OMI, Taha A, Nabeel AI, Aziz MA, Ibrahim MA. Novel NO
2
semicarbazone ligand and its metal complexes as VEGFR‐2 inhibitors: Synthesis, spectral characterization, DFT calculations, molecular docking, antimicrobial and antitumor evaluation. Appl Organomet Chem 2022. [DOI: 10.1002/aoc.6845] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Nesma Salah
- Department of Chemistry, Faculty of Education Ain Shams University, Roxy Cairo Egypt
| | - Adel A. A. Emara
- Department of Chemistry, Faculty of Education Ain Shams University, Roxy Cairo Egypt
| | - Omima M. I. Adly
- Department of Chemistry, Faculty of Education Ain Shams University, Roxy Cairo Egypt
| | - A. Taha
- Department of Chemistry, Faculty of Education Ain Shams University, Roxy Cairo Egypt
| | - Asmaa I. Nabeel
- Department of Chemistry, Faculty of Education Ain Shams University, Roxy Cairo Egypt
| | - Maged A. Aziz
- Department of Chemistry, Faculty of Science Zagazig University Zagazig Egypt
| | - Magdy A. Ibrahim
- Department of Chemistry, Faculty of Education Ain Shams University, Roxy Cairo Egypt
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Amalanathan M, Michael Mary MS, Beatrice ML, Delphine SM, Robert HM, Twinkle AR, Ratkovic Z, Samson Y. Synthesis, structural, spectroscopic and docking studies on (E)-1-Ferrocenyl-3-phenylpropen-1-one by the density functional theory. MOLECULAR SIMULATION 2021. [DOI: 10.1080/08927022.2021.2016743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- M. Amalanathan
- Department of Physics & Research Centre, Nanjil Catholic College of Arts and Science, Kaliyakkavilai, India
| | - M. Sony Michael Mary
- Manonmaniam Sundaranar University, Tirunelveli, India
- Department of Physics & Research Centre, Nesamony Memorial Christian College, Marthandam, India
| | - M. Latha Beatrice
- Manonmaniam Sundaranar University, Tirunelveli, India
- Department of Physics & Research Centre, Holy Cross College, Nagercoil, India
| | - S. Mary Delphine
- Department of Physics & Research Centre, Holy Cross College, Nagercoil, India
| | - H. Marshan Robert
- Department of Physics & Research Centre, Women’s Christian College, Nagercoil, India
| | - A. R. Twinkle
- Department of Physics, Mar Ivanios College, Thiruvananthapuram, India
| | - Zoran Ratkovic
- Department of Chemistry, Faculty of Science, University of Kragujevac, Kragujevac, Serbia
| | - Y. Samson
- Department of Physics, Annai Velankanni College, Tholayavattan, India
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Robert HM, Usha D, Amalanathan M, Geetha RRJ, Mary MSM. Vibrational spectral, density functional theory and molecular docking analysis on 4-nitrobenzohydrazide. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.128948] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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C-demethylation and 1, 2-amino shift in (E)-2-(1-(3-aminophenyl) ethylidene)hydrazinecarboxamide to (E)-2-(2-aminobenzylidene)hydrazinecarboxamide and their applications. Sci Rep 2020; 10:21913. [PMID: 33318572 PMCID: PMC7736590 DOI: 10.1038/s41598-020-79027-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Accepted: 12/01/2020] [Indexed: 12/17/2022] Open
Abstract
A Novel (E)-2-(1-(3-aminophenyl)ethylidene)hydrazinecarboxamide 1 was synthesized by traditional method and converted to (E)-2-(2-aminobenzylidene)hydrazinecarboxamide 2 by single step in DMSO at room temperature. Synthesized compound 1 was analysed by spectroscopy (NMR and LC–MS) techniques and molecule 2 was characterized using single crystal X-ray diffraction and spectroscopy (NMR and GC–MS) techniques. These analytical technique results revealed that, C-demethylation and 1, 2 amino shift in phenyl ring of compound 1 gives molecule 2. DNA binding studies of compounds 1 and 2 was carried out by electronic absorption spectroscopy. This result revealed that, compounds 1 and 2 showed hyperchromism with bathochromic shift. Anticancer activity of compounds 1 and 2 is carried out by molecular docking with five receptors.Computer aided virtual screening demonstrated that the synthesized molecules possess ideal drug likeliness, pharmacokinetics features, toxicity profile for structure based drug discovery. The molecular docking studies revealed that the synthesized molecules are significant binding with the five selected cancer receptors with minimum binding energy (kcal/mol), number of hydrogen bonds, weak interaction, docking score and cluster RMS. The docking studies also suggested that the molecules showed interactions with DNA and the theoretical values of the binding are comparable with that of the experimental values. Hirshfeld surface analysis was used to analyze and quantify the intermolecular interactions in the crystal structure of compound 2.
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Lange JL, Davey PRWJ, Ma MT, White JM, Morgenstern A, Bruchertseifer F, Blower PJ, Paterson BM. An octadentate bis(semicarbazone) macrocycle: a potential chelator for lead and bismuth radiopharmaceuticals. Dalton Trans 2020; 49:14962-14974. [PMID: 33079111 DOI: 10.1039/d0dt02673e] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
A variant of 1,4,7,10-tetraazacyclododecane (cyclen) bearing two semicarbazone pendant groups has been prepared. The octadentate ligand forms complexes with Bi3+ and Pb2+. X-ray crystallography showed that the neutral ligand provides an eight-coordinate environment for both metal ions and intermolecular hydrogen bond interactions have influenced the coordination environments of both complexes in the solid state. NMR spectroscopy revealed a fluxional environment for both complexes. The ligand was radiolabeled with the α-emitting radioactive isotope 213Bi3+, which is used in systemic targeted radiotherapy. The resulting complex was stable in serum for at least 90 min (two decay half-lives). The Pb2+ complex has reasonably fast kinetics of formation (t1/2 = 20 min) at 25 °C and pH 7.4. The Bi3+ and Pb2+ complexes show kinetic stability in 1.2 M HCl (half-lives of 214 min and 47 min, respectively). This is the first description of a macrocycle bearing semicarbazone pendant groups and its utility in coordinating main group metals, specifically those with radiotherapeutic potential.
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Affiliation(s)
- Jaclyn L Lange
- School of Biomedical Engineering and Imaging Sciences, King's College London, St Thomas' Hospital, London SE1 7EH, UK
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Copper(II) complexes with semicarbazones: synthesis, characterization and noncovalent interactions in their crystal structures. J CHEM SCI 2020. [DOI: 10.1007/s12039-020-01847-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Synthesis, theoretical calculation and anticancer activity of 4,6-diacetylresorcinol-dithiocarbazates and their Copper(II) complexes. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128083] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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Lu W, Shi J, Nie Y, Yang L, Chen J, Zhao F, Yang S, Xu L, Chi X. Synthesis, crystal structure, antiproliferative activity, DNA binding and density functional theory calculations of 3‐(pyridin‐2‐yl)‐8‐
tert
‐butylcoumarin and its copper(II) complex. Appl Organomet Chem 2020. [DOI: 10.1002/aoc.5875] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Wen Lu
- College of Science Nanjing Forestry University Nanjing Jiangsu 210037 China
| | - Jiuzhou Shi
- College of Science Nanjing Forestry University Nanjing Jiangsu 210037 China
| | - YingFang Nie
- College of Science Nanjing Forestry University Nanjing Jiangsu 210037 China
| | - Lu Yang
- College of Science Nanjing Forestry University Nanjing Jiangsu 210037 China
| | - Jichao Chen
- College of Science Nanjing Forestry University Nanjing Jiangsu 210037 China
| | - Fengyi Zhao
- College of Science Nanjing Forestry University Nanjing Jiangsu 210037 China
| | - Shilong Yang
- Advanced Analysis and Testing Center Nanjing Forestry University Nanjing Jiangsu 210037 China
| | - Li Xu
- College of Science Nanjing Forestry University Nanjing Jiangsu 210037 China
- Co‐Innovation Center for Sustainable Forestry in Southern China Nanjing Forestry University Nanjing Jiangsu 210037 China
| | - Xingwei Chi
- College of Science Nanjing Forestry University Nanjing Jiangsu 210037 China
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Saritha SR, Anitha L, Layana SR, Sithambaresan M, Sudarsanakumar MR. Crystal structure of 2-[(2 E)-2-methyl-3-phenyl-prop-2-en-1-yl-idene]- N-phenyl-hydrazinecarboxamide. Acta Crystallogr E Crystallogr Commun 2019; 75:163-166. [PMID: 30800444 PMCID: PMC6362643 DOI: 10.1107/s2056989018018376] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Accepted: 12/28/2018] [Indexed: 11/10/2022]
Abstract
The title compound, C17H17N3O, crystallizes with two independent mol-ecules in the asymmetric unit. The semicarbazone moieties of these independent mol-ecules (I and II) are essentially planar [maximum deviation of 0.042 (1) Å in mol-ecule I and 0.041 (1) Å in mol-ecule II], with the terminal phenyl rings twisted away from the mean plane of the semicarbazone moiety, making dihedral angles of 60.26 (8) and 28.76 (9)° in mol-ecule I and 31.07 (9) and 35.45 (8)° in mol-ecule II. The mol-ecules both exhibit an E configuration with respect to the C=C and azomethine C=N bonds. In the crystal, two classical N-H⋯O hydrogen-bonding inter-actions are present between the two mol-ecules, forming a centrosymmetric dimer, while a weak C-H⋯O non-classical hydrogen-bonding inter-action, with a donor-acceptor distance of 3.476 (2) Å, inter-connects two neighbouring centrosymmetric dimers to form a cage-like structure. These cage structures are inter-connected by weak C-H⋯π inter-actions with an H⋯π distance of 2.790 Å, forming supra-molecular chains along the c-axis direction.
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Affiliation(s)
- S. R. Saritha
- Department of Chemistry, Mahatma Gandhi College, University of Kerala, Thiruvananthapuram 695 004, Kerala, India
| | - L. Anitha
- Department of Chemistry, Mahatma Gandhi College, University of Kerala, Thiruvananthapuram 695 004, Kerala, India
| | - S. R. Layana
- Department of Chemistry, Mahatma Gandhi College, University of Kerala, Thiruvananthapuram 695 004, Kerala, India
| | - M. Sithambaresan
- Department of Chemistry, Faculty of Science, Eastern University, Sri Lanka, Chenkalady, Sri Lanka
| | - M. R. Sudarsanakumar
- Department of Chemistry, Mahatma Gandhi College, University of Kerala, Thiruvananthapuram 695 004, Kerala, India
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