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Mortada S, Brandán SA, Karrouchi K, El-gourrami O, doudach L, Bacha RE, Ansar M, Faouzi MEA. Synthesis, spectroscopic and DFT studies of 5-methyl-1H-pyrazole-3-carbohydrazide N-glycoside as potential anti-diabetic and antioxidant agent. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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2
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Structure and absolute configuration of parodiolide, a new dimeric sesquiterpene lactone isolated from Mikania parodii Cabrera possessing an uncommon spiro connexion. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.132270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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3
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Liao TH, Hu WY, Sun H, Ye WJ, Guo Q, Zhou ZX. SYNTHESIS, CRYSTAL STRUCTURE, DFT CALCULATIONS AND VIBRATIONAL PROPERTIES OF METHYL(tert-BUTOXYCARBONYL)-L- TYROSINATE AND METHYL(2,2,2- TRIFLUOROACETYL)-L-TYROSINATE. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622010127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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4
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Chithra S, Mani G, Kumar M, Muthu S, Saral A, Asif FB, Irfan A. Anti-microbial activity, molecular profiling, electronic properties and molecular docking investigations of 5–[1-hydroxy–2–(isopropylamino)ethyl] benzene–1,3–diol. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131299] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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5
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Anitha K, Subha M, Elakkiya MT. Synthesis, growth, structural, optical, thermal and NLO studies of new organic single crystal: 3-Hydroxy pyridinium 2-hydroxy benzoate. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130850] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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6
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Synthesis, structural and spectroscopic characterization, in silico study, and antinociceptive effect in adult zebrafish of 2-(4-isobutylphenyl) -N'-phenylpropanohydrazide. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130860] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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Rao PVR, Srishailam K, Reddy BV, Rao GR. Theoretical (DFT) and experimental (FT-IR & FT Raman) approach to investigate the molecular geometry and vibrational properties of 2,5- and 2,6-dihydroxytoluenes. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130617] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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8
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Spectroscopic (FT-IR, FT-Raman, UV-Vis) molecular structure, electronic, molecular docking, and thermodynamic investigations of indole-3-carboxylic acid by DFT method. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130182] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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9
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Synthesis, crystal structure, DFT, molecular docking and antitumor activity of 4-(2-chlorobenzyl)-1-(5-fluoro-2-hydroxy-3-((4-methylpiperidin-1-yl)methyl)phenyl)-[1,2,4]triazolo[4,3-a]quinazolin-5(4H)-one. RESEARCH ON CHEMICAL INTERMEDIATES 2021. [DOI: 10.1007/s11164-021-04491-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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10
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From hydrophobity to hydrophilicity: Design, synthesis, structural transformation and distinguishment of highly symmetric 1,3-bis(carboxymethyl)imidazolium bis(trifluoromethyl)sulfonyl)amide ionic liquids. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129688] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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11
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Synthesis, crystal structure and vibrational properties studies of 2-((4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenoxy)methyl) benzonitrile and N-(3-bromobenzyl)-4-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)aniline. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129782] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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12
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Spectroscopic investigation, Hirshfeld surface analysis and molecular docking studies on mebendazole and its derivatives. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Experimental isolation and spectroscopic characterization of squamocin acetogenin combining FT-IR, FT-Raman and UV-Vis spectra with DFT calculations. J Mol Struct 2020; 1219:128610. [PMID: 32536722 PMCID: PMC7279733 DOI: 10.1016/j.molstruc.2020.128610] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 06/02/2020] [Accepted: 06/03/2020] [Indexed: 01/18/2023]
Abstract
Squamocin, an annonaceous acetogenin has been experimentally isolated and characterized in the solid state using the FT-IR and FT-Raman spectra and in methanol solution by UV–visible spectrum. The main bands observed were assigned combining the IR and Raman spectra with hybrid functional B3LYP/6-31G∗ calculations. Structural, electronic and topological properties were predicted at the same level of theory for the most stable conformer of squamocin in gas phase and methanol solution. A corrected solvation energy value of −147.54 kJ/mol was predicted for squamocin in methanol while the atomic population natural (NPA) charges evidence higher values on O atoms of R2 and R3 rings, as compared with the corresponding to lactone ring. Mapped MEP surfaces suggest that nucleophilic regions are located on the O atoms of three rings and of OH bonds belonging to side chain, in agreement with the higher charges values evidenced on these O atoms while electrophilic regions are predicted on the H atoms of OH groups. High stabilities of squamocin in both media was revealed by AIM studies while only in methanol solution by NBO calculations. The expansion of volume and the higher dipole moment in methanol suggest a clear solvation of squamocin by solvent molecules. Gap values have evidenced that squamocin is most reactive in methanol while that its large aliphatic chain produces an increases the reactivity of this γ-lactone, as compared with ascorbic acid lactone. Reasonable concordances among the predicted UV–visible and IR, Raman spectra with the corresponding experimental ones were found. Squamocin acetogenin has been isolated and characterized by IR and Raman spectra. Structural properties were studied by hybrid functional B3LYP/6-31G∗ calculations. Corrected solvation energy of −147.54 kJ/mol was predicted for squamocin in methanol. Nucleophilic regions located on the O atoms of three rings were found. High stabilities of squamocin in both media was revealed by AIM studies.
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Synthesis, X-ray structure, vibrational spectroscopy, DFT, biological evaluation and molecular docking studies of (E)-N’-(4-(dimethylamino)benzylidene)-5-methyl-1H-pyrazole-3-carbohydrazide. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128541] [Citation(s) in RCA: 62] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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15
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Balachandar KG, Thangamani A. A few insensitive energetic nitrogen rich compounds composed of substituted azoles and 3,5-dinitrobenzoic acid: Synthesis, characterization, physicochemical, detonation properties and pyrolytic products. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Sagaama A, Noureddine O, Brandán SA, Jędryka AJ, Flakus HT, Ghalla H, Issaoui N. Molecular docking studies, structural and spectroscopic properties of monomeric and dimeric species of benzofuran-carboxylic acids derivatives: DFT calculations and biological activities. Comput Biol Chem 2020; 87:107311. [PMID: 32604029 DOI: 10.1016/j.compbiolchem.2020.107311] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 05/14/2020] [Accepted: 06/15/2020] [Indexed: 01/18/2023]
Abstract
Structural optimization, molecular docking analysis, electronic and vibrational properties have been investigated for the 1-benzofuran-2-carboxylic acid (2BF) and 1-benzofuran-3-carboxylic acid (3BF) using DFT/B3LYP/6-311++G(d,p) level of theory. The theoretical parameters have a very good consistency with the experimental ones. The weak intermolecular interactions were analyzed by different tool such as: Hirshfeld surfaces, topological analysis and natural bond orbital studies. The nonlinear optical properties have been investigated. Molecular electrostatic potential and frontier molecular orbitals (FMOs) analysis have been carried out to understand the reactivity of the molecule. In addition, TD-DFT calculation is initiated to simulate the UV-vis absorption spectrum and to determine several important electronic properties like HOMO-LUMO gap energy and electronic transitions. The complete vibrational assignments and the force constants were reported for monomer and dimers of both acids. The biological activities of the tow acids have been studied via molecular docking analysis. The later calculations prove that the studied acids have an inhibitor effect against cancer and microbial diseases.
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Affiliation(s)
- Abir Sagaama
- University of Monastir, Laboratory of Quantum and Statistical Physics (LR18ES18), Faculty of Sciences, Monastir, 5079, Tunisia
| | - Olfa Noureddine
- University of Monastir, Laboratory of Quantum and Statistical Physics (LR18ES18), Faculty of Sciences, Monastir, 5079, Tunisia
| | - Silvia Antonia Brandán
- Cátedra de Química General, Instituto de Química Inorgánica, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, Ayacucho 471, 4000, San Miguel de Tucumán, Tucumán, Argentina
| | - Anna Jarczyk- Jędryka
- Institute of Chemistry, University of Silesia, 9 Szkolna Street, 40-007, Katowice, Poland
| | - Henryk T Flakus
- Retired from the Institute of Chemistry, University of Silesia, 9 Szkolna Street, 40-007 Katowice, Poland
| | - Houcine Ghalla
- University of Monastir, Laboratory of Quantum and Statistical Physics (LR18ES18), Faculty of Sciences, Monastir, 5079, Tunisia
| | - Noureddine Issaoui
- University of Monastir, Laboratory of Quantum and Statistical Physics (LR18ES18), Faculty of Sciences, Monastir, 5079, Tunisia.
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Wang Q, Zhao H, Zhu M, Gao L, Cheng N, Cao W. Spectroscopy characterization, theoretical study and antioxidant activities of the flavonoids-Pb(II) complexes. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.127919] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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19
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Sathiyakumar S, Selvam P, Antharjanam S, Hakkim FL, Srinivasan K, Harrison WT. Mechano-chemical syntheses of new cobalt(II) complexes of alkyl 2-(pyridine-2yl-methylene) hydrazinecarboxylates: Crystal structures, spectroscopic and photoluminescence properties. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127666] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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20
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Hammud HH, Holman KT, Al-Noaimi M, Sheikh NS, Ghannoum AM, Bouhadir KH, Masoud MS, Karnati RK. Structures of selected transition metal complexes with 9-(2-hydroxyethyl)adenine: Potentiometric complexation and DFT studies. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127548] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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21
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Chahar FC, Alvarez PE, Zampini C, Isla MI, Brandán SA. Experimental and DFT studies on 2′,4′-dihydroxychalcone, a product isolated from Zuccagnia punctata Cav. (Fabaceae) medicinal plant. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127221] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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22
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Eltayeb NE, Şen F, Lasri J, Hussien MA, Elsilk SE, Babgi BA, Gökce H, Sert Y. Hirshfeld Surface analysis, spectroscopic, biological studies and molecular docking of (4E)-4-((naphthalen-2-yl)methyleneamino)-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127315] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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23
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Experimental and theoretical studies of the schiff base (Z)-1-(thiophen-2-yl- methyleneamino) propane-2-ol. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127104] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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24
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Iramain MA, Imbarack E, Bongiorno PL, Brandán SA. Characterization of potassium (2-phenylacetyl) trifluoroborate salt by using the UV–Visible, FT-IR and FT-Raman spectra. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127057] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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25
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John L, Dasan A, Joseyphus RS, Joe IH. Molecular docking, structural characterization, DFT and cytotoxicity studies of metal(II) Schiff base complexes derived from thiophene-2-carboxaldehyde and l-histidine. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.126934] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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26
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Luo D, Ma L, Zhou Z, Huang Z. Synthesis, single crystal X-ray analysis, and vibrational spectral studies of ethyl 6-bromo-5-((5-bromopyrimidin-2-yl)oxy)-2-((2, 6-dimethylmorpholino)methyl)-1-methyl-1H-indole-3-carboxylate. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.07.104] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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27
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Exploring properties of potassium 6-X-2-isonicotinoyltrifluoroborate (X=H, F, Cl, Br) salts and their anions by using ab initio calculations. J Mol Model 2019; 25:348. [DOI: 10.1007/s00894-019-4234-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2018] [Accepted: 10/14/2019] [Indexed: 12/30/2022]
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28
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Hidalgo JR, Neske A, Iramain MA, Alvarez PE, Bongiorno PL, Brandán SA. FT-IR, FT-Raman and UV-visible spectra of motrilin acetogenin isolated from Annona cherimolia. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.06.107] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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29
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Iramain MA, Ledesma AE, Brandán SA. Structural properties and vibrational analysis of Potassium 5-Br-2-isonicotinoyltrifluoroborate salt. Effect of Br on the isonicotinoyl ring. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.02.010] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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30
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Rudyk RA, Checa MA, Catalán CA, Brandán SA. Structural, FT-IR, FT-Raman and ECD studies on the free base, cationic and hydrobromide species of scopolamine alkaloid. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.12.040] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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31
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Minteguiaga M, Dellacassa E, Iramain MA, Catalán CA, Brandán SA. FT-IR, FT-Raman, UV–Vis, NMR and structural studies of carquejyl acetate, a distinctive component of the essential oil from Baccharis trimera (less.) DC. (Asteraceae). J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.10.010] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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32
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Kausteklis J, Aleksa V, Iramain MA, Brandán SA. DFT and vibrational spectroscopy study of 1-butyl-3-methylimidazolium trifluoromethanesulfonate ionic liquid. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.08.014] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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33
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Iramain MA, Davies L, Brandán SA. Structural and spectroscopic differences among the potassium 5-hydroxypentanoyltrifluoroborate salt and the furoyl and isonicotinoyl salts. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.09.015] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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34
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Malik-Gajewska M, Trynda J, Zierkiewicz W, Helios K, Latajka R, Wietrzyk J, Michalska D. Picoplatin-based complexes with the bioactive orotate and 5-fluoroorotate ligands: Synthesis, DFT calculations, structure, spectroscopic characterization and in vitro cytotoxicity. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.06.006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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