A method for detecting high-frequency oscillations using semi-supervised k-means and mean shift clustering

Unsupervised detection of high-frequency oscillations in intracranial electroencephalogram: promoting a valuable automated diagnostic tool for epilepsy

Objective

This study aims to develop an unsupervised automated method for detecting high-frequency oscillations (HFOs) in intracranial electroencephalogram (iEEG) signals, addressing the limitations of manual detection processes.

Method

The proposed method utilizes an unsupervised convolutional variational autoencoder (CVAE) model in conjunction with the short-term energy method (STE) to analyze two-dimensional time-frequency representations of iEEG signals. Candidate HFOs are identified using STE and transformed into time-frequency maps using the continuous wavelet transform (CWT). The CVAE model is trained for dimensionality reduction and feature reconstruction, followed by clustering of the reconstructed maps using the K-means algorithm for automated HFOs detection.

Results

Evaluation of the proposed unsupervised method on clinical iEEG data demonstrates its superior performance compared to traditional supervised models. The automated approach achieves an accuracy of 93.02%, sensitivity of 94.48%, and specificity of 92.06%, highlighting its efficacy in detecting HFOs with high accuracy.

Conclusion

The unsupervised automated method developed in this study offers a reliable and efficient solution for detecting HFOs in iEEG signals, overcoming the limitations of manual detection processes of traditional supervised models. By providing clinicians with a clinically useful diagnostic tool, this approach holds promise for enhancing surgical resection planning in epilepsy patients and improving patient outcomes.

Exploring patient medication adherence and data mining methods in clinical big data: A contemporary review

BACKGROUND

Increasingly, patient medication adherence data are being consolidated from claims databases and electronic health records (EHRs). Such databases offer an indirect avenue to gauge medication adherence in our data-rich healthcare milieu. The surge in data accessibility, coupled with the pressing need for its conversion to actionable insights, has spotlighted data mining, with machine learning (ML) emerging as a pivotal technique. Nonadherence poses heightened health risks and escalates medical costs. This paper elucidates the synergistic interaction between medical database mining for medication adherence and the role of ML in fostering knowledge discovery.

METHODS

We conducted a comprehensive review of EHR applications in the realm of medication adherence, leveraging ML techniques. We expounded on the evolution and structure of medical databases pertinent to medication adherence and harnessed both supervised and unsupervised ML paradigms to delve into adherence and its ramifications.

RESULTS

Our study underscores the applications of medical databases and ML, encompassing both supervised and unsupervised learning, for medication adherence in clinical big data. Databases like SEER and NHANES, often underutilized due to their intricacies, have gained prominence. Employing ML to excavate patient medication logs from these databases facilitates adherence analysis. Such findings are pivotal for clinical decision-making, risk stratification, and scholarly pursuits, aiming to elevate healthcare quality.

CONCLUSION

Advanced data mining in the era of big data has revolutionized medication adherence research, thereby enhancing patient care. Emphasizing bespoke interventions and research could herald transformative shifts in therapeutic modalities.

Automated Detection of Patients at High Risk of Polypharmacy including Anticholinergic and Sedative Medications

Ensuring that medicines are prescribed safely is fundamental to the role of healthcare professionals who need to be vigilant about the risks associated with drugs and their interactions with other medicines (polypharmacy). One aspect of preventative healthcare is to use artificial intelligence to identify patients at risk using big data analytics. This will improve patient outcomes by enabling pre-emptive changes to medication on the identified cohort before symptoms present. This paper presents a mean-shift clustering technique used to identify groups of patients at the highest risk of polypharmacy. A weighted anticholinergic risk score and a weighted drug interaction risk score were calculated for each of 300,000 patient records registered with a major regional UK-based healthcare provider. The two measures were input into the mean-shift clustering algorithm and this grouped patients into clusters reflecting different levels of polypharmaceutical risk. Firstly, the results showed that, for most of the data, the average scores are not correlated and, secondly, the high risk outliers have high scores for one measure but not for both. These suggest that any systematic recognition of high-risk groups should consider both anticholinergic and drug-drug interaction risks to avoid missing high-risk patients. The technique was implemented in a healthcare management system and easily and automatically identifies groups at risk far faster than the manual inspection of patient records. This is much less labour-intensive for healthcare professionals who can focus their assessment only on patients within the high-risk group(s), enabling more timely clinical interventions where necessary.

Applications of Machine Learning in Knowledge Management System: A Comprehensive Review

As new generations of technology appear, legacy knowledge management solutions and applications become increasingly out of date, necessitating a paradigm shift. Machine learning presents an opportunity by foregoing rule-based knowledge intensive systems inundating the marketplace. An extensive review was made on the literature pertaining to machine learning which common machine learning algorithms were identified. This study has analysed more than 200 papers extracted from Scopus and IEEE databases. Searches ranged with the bulk of the articles from 2018 to 2021, while some articles ranged from 1959 to 2017. The research gap focusses on implementing machine learning algorithm to knowledge management systems, specifically knowledge management attributes. By investigating and reviewing each algorithm extensively, the usability of each algorithm is identified, with its advantages and disadvantages. From there onwards, these algorithms were mapped for what area of knowledge management it may be beneficial. Based on the findings, it is evidently seen how these algorithms are applicable in knowledge management and how it can enhance knowledge management system further. Based on the findings, the paper aims to bridge the gap between the literature in knowledge management and machine learning. A knowledge management–machine learning framework is conceived based on the review done on each algorithm earlier and to bridge the gap between the two literatures. The framework highlights how machine learning algorithm can play a part in different areas of knowledge management. From the framework, it provides practitioners how and where to implement machine learning in knowledge management.

Automatic Detection of High-Frequency Oscillations Based on an End-to-End Bi-Branch Neural Network and Clinical Cross-Validation

Accurate identification of high-frequency oscillation (HFO) is an important prerequisite for precise localization of epileptic foci and good prognosis of drug-refractory epilepsy. Exploring a high-performance automatic detection method for HFOs can effectively help clinicians reduce the error rate and reduce manpower. Due to the limited analysis perspective and simple model design, it is difficult to meet the requirements of clinical application by the existing methods. Therefore, an end-to-end bi-branch fusion model is proposed to automatically detect HFOs. With the filtered band-pass signal (signal branch) and time-frequency image (TFpic branch) as the input of the model, two backbone networks for deep feature extraction are established, respectively. Specifically, a hybrid model based on ResNet1d and long short-term memory (LSTM) is designed for signal branch, which can focus on both the features in time and space dimension, while a ResNet2d with a Convolutional Block Attention Module (CBAM) is constructed for TFpic branch, by which more attention is paid to useful information of TF images. Then the outputs of two branches are fused to realize end-to-end automatic identification of HFOs. Our method is verified on 5 patients with intractable epilepsy. In intravalidation, the proposed method obtained high sensitivity of 94.62%, specificity of 92.7%, and F1-score of 93.33%, and in cross-validation, our method achieved high sensitivity of 92.00%, specificity of 88.26%, and F1-score of 89.11% on average. The results show that the proposed method outperforms the existing detection paradigms of either single signal or single time-frequency diagram strategy. In addition, the average kappa coefficient of visual analysis and automatic detection results is 0.795. The method shows strong generalization ability and high degree of consistency with the gold standard meanwhile. Therefore, it has great potential to be a clinical assistant tool.

An Automatic HFO Detection Method Combining Visual Inspection Features with Multi-Domain Features

As an important promising biomarker, high frequency oscillations (HFOs) can be used to track epileptic activity and localize epileptogenic zones. However, visual marking of HFOs from a large amount of intracranial electroencephalogram (iEEG) data requires a great deal of time and effort from researchers, and is also very dependent on visual features and easily influenced by subjective factors. Therefore, we proposed an automatic epileptic HFO detection method based on visual features and non-intuitive multi-domain features. To eliminate the interference of continuous oscillatory activity in detected sporadic short HFO events, the iEEG signals adjacent to the detected events were set as the neighboring environmental range while the number of oscillations and the peak-valley differences were calculated as the environmental reference features. The proposed method was developed as a MatLab-based HFO detector to automatically detect HFOs in multi-channel, long-distance iEEG signals. The performance of our detector was evaluated on iEEG recordings from epileptic mice and patients with intractable epilepsy. More than 90% of the HFO events detected by this method were confirmed by experts, while the average missed-detection rate was < 10%. Compared with recent related research, the proposed method achieved a synchronous improvement of sensitivity and specificity, and a balance between low false-alarm rate and high detection rate. Detection results demonstrated that the proposed method performs well in sensitivity, specificity, and precision. As an auxiliary tool, our detector can greatly improve the efficiency of clinical experts in inspecting HFO events during the diagnosis and treatment of epilepsy.

Detection of high-frequency oscillations in electroencephalography: A scoping review and an adaptable open-source framework

PURPOSE

High frequency oscillations (HFOs) are putative biomarkers of epileptogenicity. These electrophysiological phenomena can be effectively detected in electroencephalography using automated methods. Nonetheless, the implementation of these methods into clinical practice remains challenging as significant variability exists between algorithms and their characterizations of HFOs. Here, we perform a scoping review of the literature pertaining to automated HFO detection methods. In addition, we propose a framework for defining and detecting HFOs based on a simplified single-stage time-frequency based detection algorithm with clinically-familiar parameters.

METHODS

Several databases (OVID Medline, Web of Science, PubMed) were searched for articles presenting novel, automated HFO detection methods. Details related to the algorithm and various stages of data acquisition, pre-processing, and analysis were abstracted from included studies.

RESULTS

From the 261 records screened, 57 articles presented novel, automated HFO detection methods and were included in the scoping review. These algorithms were categorized into 3 groups based on their most salient features: energy thresholding, time-frequency analysis, and data mining/machine learning. Algorithms were optimized for specific datasets and suffered from low specificity. A framework for user-constrained inputs is proposed to circumvent some of the weaknesses of highly performant detectors.

CONCLUSIONS

Further efforts are required to optimize and validate existing automated HFO detection methods for clinical utility. The proposed framework may be applied to understand and standardize the variations in HFO definitions across institutions.

Calibration and Verification of Dynamic Particle Flow Parameters by the Back-Propagation Neural Network Based on the Genetic Algorithm: Recycled Polyurethane Powder

The discrete element method (DEM) is commonly used to study various powders in motion during transportation, screening, mixing, etc.; this requires several microscopic parameters to characterize the complex mechanical behavior of the particles. Herein, a new discrete element parameter calibration method is proposed to calibrate the ultrafine agglomerated powder (recycled polyurethane powder). Optimal Latin hypercube sampling and virtual simulation experiments were conducted using the commercial DEM software; the microscopic variables included the static friction coefficient between the particles, collision recovery coefficient, Johnson–Kendall–Roberts surface energy, static friction coefficient between the particles and wall, and collision recovery coefficient. A predictive model based on genetic-algorithm-optimized feedforward neural network (back propagation) was developed to calibrate the microscopic DEM simulation parameters. The cycle search algorithm and mean-shift cluster analysis were used to confirm the input parameters’ range by comparing the mean value of the dynamic angle of repose measured via the batch accumulation test. These parameters were verified by the baffle lifting method and the rotating drum method. This calibration method, once successfully developed, will be suitable for use in a variety of fine viscous powder dynamic flow conditions.