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Zhang J, Xia J, Liu X, Olichney J. Machine Learning on Visibility Graph Features Discriminates the Cognitive Event-Related Potentials of Patients with Early Alzheimer's Disease from Healthy Aging. Brain Sci 2023; 13:770. [PMID: 37239242 PMCID: PMC10216358 DOI: 10.3390/brainsci13050770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Revised: 05/02/2023] [Accepted: 05/04/2023] [Indexed: 05/28/2023] Open
Abstract
We present a framework for electroencephalography (EEG)-based classification between patients with Alzheimer's Disease (AD) and robust normal elderly (RNE) via a graph theory approach using visibility graphs (VGs). This EEG VG approach is motivated by research that has demonstrated differences between patients with early stage AD and RNE using various features of EEG oscillations or cognitive event-related potentials (ERPs). In the present study, EEG signals recorded during a word repetition experiment were wavelet decomposed into 5 sub-bands (δ,θ,α,β,γ). The raw and band-specific signals were then converted to VGs for analysis. Twelve graph features were tested for differences between the AD and RNE groups, and t-tests employed for feature selection. The selected features were then tested for classification using traditional machine learning and deep learning algorithms, achieving a classification accuracy of 100% with linear and non-linear classifiers. We further demonstrated that the same features can be generalized to the classification of mild cognitive impairment (MCI) converters, i.e., prodromal AD, against RNE with a maximum accuracy of 92.5%. Code is released online to allow others to test and reuse this framework.
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Affiliation(s)
- Jesse Zhang
- Computer Science Department, University of Southern California, Los Angeles, CA 90089, USA;
| | - Jiangyi Xia
- UC Davis Center for Mind and Brain, Davis, CA 95618, USA;
| | - Xin Liu
- UC Davis Computer Science Department, Davis, CA 95616, USA;
| | - John Olichney
- UC Davis Center for Mind and Brain, Davis, CA 95618, USA;
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Quiñones I, Molinaro N, Mancini S, Hernández-Cabrera JA, Barber H, Carreiras M. Tracing the interplay between syntactic and lexical features: fMRI evidence from agreement comprehension. Neuroimage 2018; 175:259-271. [DOI: 10.1016/j.neuroimage.2018.03.069] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Revised: 03/27/2018] [Accepted: 03/28/2018] [Indexed: 11/26/2022] Open
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Carreiras M, Quiñones I, Mancini S, Hernández-Cabrera JA, Barber H. Verbal and nominal agreement: An fMRI study. Neuroimage 2015; 120:88-103. [DOI: 10.1016/j.neuroimage.2015.06.075] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2014] [Revised: 01/30/2015] [Accepted: 06/25/2015] [Indexed: 11/29/2022] Open
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Cao W, Luo C, Zhu B, Zhang D, Dong L, Gong J, Gong D, He H, Tu S, Yin W, Li J, Chen H, Yao D. Resting-state functional connectivity in anterior cingulate cortex in normal aging. Front Aging Neurosci 2014; 6:280. [PMID: 25400578 PMCID: PMC4212807 DOI: 10.3389/fnagi.2014.00280] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2014] [Accepted: 09/25/2014] [Indexed: 12/19/2022] Open
Abstract
Growing evidence suggests that normal aging is associated with cognitive decline and well-maintained emotional well-being. The anterior cingulate cortex (ACC) is an important brain region involved in emotional and cognitive processing. We investigated resting-state functional connectivity (FC) of two ACC subregions in 30 healthy older adults vs. 33 healthy younger adults, by parcellating into rostral (rACC) and dorsal (dACC) ACC based on clustering of FC profiles. Compared with younger adults, older adults demonstrated greater connection between rACC and anterior insula, suggesting that older adults recruit more proximal dACC brain regions connected with insula to maintain a salient response. Older adults also demonstrated increased FC between rACC and superior temporal gyrus and inferior frontal gyrus, decreased integration between rACC and default mode, and decreased dACC-hippocampal and dACC-thalamic connectivity. These altered FCs reflected rACC and dACC reorganization, and might be related to well emotion regulation and cognitive decline in older adults. Our findings provide further insight into potential functional substrates of emotional and cognitive alterations in the aging brain.
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Affiliation(s)
- Weifang Cao
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Cheng Luo
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Bin Zhu
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Dan Zhang
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Li Dong
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Jinnan Gong
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Diankun Gong
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Hui He
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Shipeng Tu
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Wenjie Yin
- Radiology Department, Chengdu First People's Hospital Chengdu, China
| | - Jianfu Li
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Huafu Chen
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
| | - Dezhong Yao
- The Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China Chengdu, China
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Yang JC, Chi L, Teichholtz S, Schneider A, Nanakul R, Nowacki R, Seritan A, Reed B, DeCarli C, Iragui VJ, Kutas M, Hagerman PJ, Hagerman RJ, Olichney JM. ERP abnormalities elicited by word repetition in fragile X-associated tremor/ataxia syndrome (FXTAS) and amnestic MCI. Neuropsychologia 2014; 63:34-42. [PMID: 25111034 DOI: 10.1016/j.neuropsychologia.2014.08.001] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2014] [Revised: 07/31/2014] [Accepted: 08/01/2014] [Indexed: 01/26/2023]
Abstract
BACKGROUND Fragile X-associated tremor/ataxia syndrome (FXTAS), a neurodegenerative disorder caused by FMR1 gene premutations, typically associated with frontal-subcortical type cognitive impairments. High prevalence (~50%) of superimposed Alzheimer׳s pathology has been reported in FMR1 premutation carriers, and standardized neuropsychological tests have not yielded any robust discriminators between FXTAS and Alzheimer׳s disease (AD) dementia. The similarities/differences in memory processes between FXTAS and early AD remain underexplored. METHODS 32-channel event-related potentials (ERPs) were obtained from a semantic judgment task in which semantically congruous (50%) and incongruous pairs repeat pseudorandomly. The N400 and late positive component (LPC) of 25 FXTAS patients (M(age)=71.2, MMSE=26.6) were compared to a matched group of 25 patients with MCI or early AD (1 mild AD dementia, 24 amnestic MCI, of whom 18 later converted to AD; M(age)=73.4, MMSE=26.4), and 25 healthy elderly. RESULTS Both patient groups showed similar reductions in the N400 repetition effect and N400 congruity effect amplitudes, compared to controls, reflecting abnormal semantic priming and repetition priming. The MCI/AD group, however, had significantly smaller LPC word repetition effects and poorer learning and memory on the CVLT than FXTAS. The LPC and N400 repetition effects both correlated with verbal memory across all subjects, but only N400 correlated with memory in FXTAS. CONCLUSION FXTAS patients show relative sparing of the LPC repetition effect, and less disruption of explicit memory than prodromal/early AD. N400 abnormalities in FXTAS appear to account for much of their mild impairments in verbal learning and memory.
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Affiliation(s)
- Jin-Chen Yang
- University of California Davis, Center for Mind and Brain, Davis, CA 95618-5412, USA; University of California Davis, Department of Neurology, School of Medicine, Sacramento, CA 95618-5412, USA.
| | - Lillian Chi
- University of California Davis, Center for Mind and Brain, Davis, CA 95618-5412, USA; University of California Davis, Department of Neurology, School of Medicine, Sacramento, CA 95618-5412, USA
| | - Sara Teichholtz
- University of California Davis, Center for Mind and Brain, Davis, CA 95618-5412, USA; University of California Davis, Department of Neurology, School of Medicine, Sacramento, CA 95618-5412, USA
| | - Andrea Schneider
- University of California Davis, M.I.N.D. Institute, School of Medicine, Sacramento, CA, USA; University of California Davis, Department of Pediatrics, School of Medicine, Sacramento, CA, USA
| | - Rawi Nanakul
- University of California Davis, Center for Mind and Brain, Davis, CA 95618-5412, USA; University of California Davis, Department of Neurology, School of Medicine, Sacramento, CA 95618-5412, USA
| | - Ralph Nowacki
- University of California San Diego, Department of Neurosciences, San Diego, CA, USA; VA San Diego Healthcare System, San Diego, CA, USA
| | - Andreea Seritan
- University of California Davis, Department of Psychiatry and Behavioral Sciences, School of Medicine, Sacramento, CA, USA
| | - Bruce Reed
- University of California Davis, Department of Neurology, School of Medicine, Sacramento, CA 95618-5412, USA
| | - Charles DeCarli
- University of California Davis, Department of Neurology, School of Medicine, Sacramento, CA 95618-5412, USA
| | - Vicente J Iragui
- University of California San Diego, Department of Neurosciences, San Diego, CA, USA; VA San Diego Healthcare System, San Diego, CA, USA
| | - Marta Kutas
- University of California San Diego, Department of Cognitive Sciences, San Diego, CA, USA
| | - Paul J Hagerman
- University of California Davis, Department of Biochemistry and Molecular Medicine, Davis, CA, USA
| | - Randi J Hagerman
- University of California Davis, M.I.N.D. Institute, School of Medicine, Sacramento, CA, USA; University of California Davis, Department of Pediatrics, School of Medicine, Sacramento, CA, USA
| | - John M Olichney
- University of California Davis, Center for Mind and Brain, Davis, CA 95618-5412, USA; University of California Davis, Department of Neurology, School of Medicine, Sacramento, CA 95618-5412, USA.
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Quiñones I, Molinaro N, Mancini S, Hernández-Cabrera JA, Carreiras M. Where agreement merges with disagreement: fMRI evidence of subject–verb integration. Neuroimage 2014; 88:188-201. [DOI: 10.1016/j.neuroimage.2013.11.038] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2013] [Revised: 10/27/2013] [Accepted: 11/18/2013] [Indexed: 10/26/2022] Open
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Olichney JM, Pak J, Salmon DP, Yang JC, Gahagan T, Nowacki R, Hansen L, Galasko D, Kutas M, Iragui-Madoz VJ. Abnormal P600 word repetition effect in elderly persons with preclinical Alzheimer's disease. Cogn Neurosci 2013; 4:143-51. [PMID: 24090465 DOI: 10.1080/17588928.2013.838945] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
We sought cognitive event-related potential (ERP) biomarkers of "Preclinical Alzheimer's disease" (Pre-AD) using an incidental verbal learning paradigm with high sensitivity to prodromal AD. Seven elderly persons, with normal cognition at the time of ERP recordings, but who showed subsequent cognitive decline or AD pathology at autopsy (n = 5, mean Braak stage = 2.8), were compared to 12 "robust" normal elderly (RNE) persons who remained cognitively normal (Mfollow-up = 9.0 years). EEG was recorded during a word repetition paradigm (semantically congruous (50%) and incongruous target words repeat ~10-140 seconds later). The RNE P600 congruous word repetition ERP effects (New minus Old congruous words) were significantly larger than in Pre-AD (mean amplitudes = 3.28 vs. 0.10 μV, p = .04). High group discrimination (84%) was achieved (by a P600 amplitude cutoff of ~1.5 μV). Abnormal P600 word repetition effects in cognitively normal elderly persons may be an important sign of synaptic dysfunction and Preclinical AD.
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Affiliation(s)
- John M Olichney
- a Department of Neurology , University of California , Davis , CA , USA
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Ballesteros S, Bischof GN, Goh JO, Park DC. Neural correlates of conceptual object priming in young and older adults: an event-related functional magnetic resonance imaging study. Neurobiol Aging 2012; 34:1254-64. [PMID: 23102512 DOI: 10.1016/j.neurobiolaging.2012.09.019] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2011] [Revised: 09/18/2012] [Accepted: 09/26/2012] [Indexed: 11/19/2022]
Abstract
In this event-related functional magnetic resonance imaging study, we investigated age-related differences in brain activity associated with conceptual repetition priming in young and older adults. Participants performed a speeded "living/nonliving" classification task with 3 repetitions of familiar objects. Both young and older adults showed a similar magnitude of behavioral priming to repeated objects and evidenced repetition-related activation reductions in fusiform gyrus, superior occipital, middle, and inferior temporal cortex, and inferior frontal and insula regions. The neural priming effect in young adults was extensive and continued through both the second and third stimulus repetitions, and neural priming in older adults was markedly attenuated and reached floor at the second repetition. In young adults, greater neural priming in multiple brain regions correlated with greater behavioral facilitation and in older adults, only activation reduction in the left inferior frontal correlated with faster behavioral responses. These findings provide evidence for altered neural priming in older adults despite preserved behavioral priming, and suggest the possibility that age-invariant behavioral priming is observed as a result of more sustained neural processing of stimuli in older adults which might be a form of compensatory neural activity.
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Affiliation(s)
- Soledad Ballesteros
- Department of Basic Psychology II, Universidad Nacional de Educación a Distancia, Madrid, Spain.
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Olichney JM, Yang JC, Taylor J, Kutas M. Cognitive event-related potentials: biomarkers of synaptic dysfunction across the stages of Alzheimer's disease. J Alzheimers Dis 2012; 26 Suppl 3:215-28. [PMID: 21971462 DOI: 10.3233/jad-2011-0047] [Citation(s) in RCA: 79] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Cognitive event-related brain potential (ERP) studies of decision-making and attention, language, and memory impairments in Alzheimer's disease (AD) and mild cognitive impairment (MCI) are reviewed. Circumscribed lesions of the medial temporal lobe (MTL), as may be the case in individuals with amnestic MCI, generally produce altered plasticity of the late positive P600 component, with relative sparing of earlier sensory ERP components. However, as the neuropathology of AD extends to neocortical association areas, abnormalities of the P300 and N400 (and perhaps even P50) become more common. Critically, ERP studies of individuals at risk for AD may reveal neurophysiological changes prior to clinical deficits, which could advance the early detection and diagnosis of "presymptomatic AD".
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Affiliation(s)
- John M Olichney
- Department of Neurology, University of California, Davis, CA, USA.
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Eyler LT, Sherzai A, Kaup AR, Jeste DV. A review of functional brain imaging correlates of successful cognitive aging. Biol Psychiatry 2011; 70:115-22. [PMID: 21316037 PMCID: PMC3641853 DOI: 10.1016/j.biopsych.2010.12.032] [Citation(s) in RCA: 150] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/15/2010] [Revised: 12/04/2010] [Accepted: 12/13/2010] [Indexed: 01/10/2023]
Abstract
Preserved cognitive performance is a key feature of successful aging. Several theoretical models have been proposed to explain the putative underlying relationship between brain function and performance. We aimed to review imaging studies of the association between brain functional response and cognitive performance among healthy younger and older adults to understand the neural correlates of successful cognitive aging. MEDLINE-indexed articles published between January 1989 and December 2009 and bibliographies of these articles and related reviews were searched. Studies that measured brain function with functional magnetic resonance imaging or positron emission tomography, evaluated cognitive performance, analyzed how cognitive performance related to brain response, and studied healthy older individuals were included. Eighty of 550 articles met these criteria. Seventy percent of the studies reported some brain regions in which greater activation related to better cognitive performance among older participants. This association was not universal, however, and was seen mainly in frontal cortex brain response and seemed to be more common among older compared with younger individuals. This review supports the notion of compensatory increases in brain activity in old age resulting in better cognitive performance, as suggested by hemispheric asymmetry reduction and posterior-anterior shift models of functional brain aging. However, a simple model of bigger structure → greater brain response → better cognitive performance might not be accurate. Suggestions for future research are discussed.
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Affiliation(s)
- Lisa T Eyler
- Sam and Rose Stein Institute for Research on Aging, University of California San Diego, San Diego, California, USA.
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Olichney JM, Taylor JR, Chan S, Yang JC, Stringfellow A, Hillert DG, Simmons AL, Salmon DP, Iragui-Madoz V, Kutas M. fMRI responses to words repeated in a congruous semantic context are abnormal in mild Alzheimer's disease. Neuropsychologia 2010; 48:2476-87. [PMID: 20433856 DOI: 10.1016/j.neuropsychologia.2010.04.021] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2009] [Revised: 04/18/2010] [Accepted: 04/20/2010] [Indexed: 10/19/2022]
Abstract
BACKGROUND We adapted an event-related brain potential word repetition paradigm, sensitive to early Alzheimer's disease (AD), for functional MRI (fMRI). We hypothesized that AD would be associated with reduced differential response to New/Old congruous words. METHODS Fifteen mild AD patients (mean age=72.9) and 15 normal elderly underwent 1.5T fMRI during a semantic category decision task. RESULTS We found robust between-groups differences in BOLD response to congruous words. In controls, the New>Old contrast demonstrated larger responses in much of the left-hemisphere (including putative P600 generators: parahippocampal, cingulate, fusiform, perirhinal, middle temporal (MTG) and inferior frontal gyri (IFG)); the Old>New contrast showed modest activation, mainly in right parietal and prefrontal cortex. By contrast, there were relatively few regions of significant New>Old responses in AD patients, mainly in the right-hemisphere, and their Old>New contrast did not demonstrate a right-hemisphere predominance. Across subjects, the spatial extent of New>Old responses in left medial temporal lobe (MTL) correlated with subsequent recall and recognition (r's>or=0.60). In controls, the magnitude of New-Old response in left MTL, fusiform, IFG, MTG, superior temporal and cingulate gyrus correlated with subsequent cued recall and/or recognition (0.51<or=r's<or=0.78). CONCLUSIONS A distributed network of mostly left-hemisphere structures, which are putative P600 generators, appears important for successful verbal encoding (with New>Old responses to congruous words in normal elderly). This network appears dysfunctional in mild AD patients, as reflected in decreased word repetition effects particularly in left association cortex, paralimbic and MTL structures.
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Affiliation(s)
- John M Olichney
- Department of Neurology, University of California, Davis, Davis, CA 95618-5412, USA.
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