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Qian Y, Zhang G, Wang Y, Yao C, Zheng Z. Winfree loop sustained oscillation in two-dimensional excitable lattices: Prediction and realization. CHAOS (WOODBURY, N.Y.) 2019; 29:073106. [PMID: 31370411 DOI: 10.1063/1.5085644] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Accepted: 06/20/2019] [Indexed: 06/10/2023]
Abstract
The problem of self-sustained oscillations in excitable complex networks is the central issue under investigation, among which the prediction and the realization of self-sustained oscillations in different kinds of excitable networks are the challenging tasks. In this paper, we extensively investigate the prediction and the realization of a Winfree loop sustained oscillation (WLSO) in two-dimensional (2D) excitable lattices. By analyzing the network structure, the fundamental oscillation source structure (FOSS) of WLSO in a 2D excitable lattice is exposed explicitly. For the suitable combinations of system parameters, the Winfree loop can self-organize on the FOSS to form an oscillation source sustaining the oscillation, and these suitable parameter combinations are predicted by calculating the minimum Winfree loop length and have been further confirmed in numerical simulations. However, the FOSS cannot spontaneously offer the WLSO in 2D excitable lattices in usual cases due to the coupling bidirectionality and the symmetry properties of the lattice. A targeted protection scheme of the oscillation source is proposed by overcoming these two drawbacks. Finally, the WLSO is realized in the 2D excitable lattice successfully.
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Affiliation(s)
- Yu Qian
- Nonlinear Research Institute, Baoji University of Arts and Sciences, Baoji 721007, China
| | - Gang Zhang
- Nonlinear Research Institute, Baoji University of Arts and Sciences, Baoji 721007, China
| | - Yafeng Wang
- Nonlinear Research Institute, Baoji University of Arts and Sciences, Baoji 721007, China
| | - Chenggui Yao
- Department of Mathematics, Shaoxing University, Shaoxing 312000, China
| | - Zhigang Zheng
- Institute of Systems Science, Huaqiao University, Xiamen 361021, China
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Qian Y, Liu F, Yang K, Zhang G, Yao C, Ma J. Spatiotemporal dynamics in excitable homogeneous random networks composed of periodically self-sustained oscillation. Sci Rep 2017; 7:11885. [PMID: 28928389 PMCID: PMC5605731 DOI: 10.1038/s41598-017-12333-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Accepted: 09/07/2017] [Indexed: 11/26/2022] Open
Abstract
The collective behaviors of networks are often dependent on the network connections and bifurcation parameters, also the local kinetics plays an important role in contributing the consensus of coupled oscillators. In this paper, we systematically investigate the influence of network structures and system parameters on the spatiotemporal dynamics in excitable homogeneous random networks (EHRNs) composed of periodically self-sustained oscillation (PSO). By using the dominant phase-advanced driving (DPAD) method, the one-dimensional (1D) Winfree loop is exposed as the oscillation source supporting the PSO, and the accurate wave propagation pathways from the oscillation source to the whole network are uncovered. Then, an order parameter is introduced to quantitatively study the influence of network structures and system parameters on the spatiotemporal dynamics of PSO in EHRNs. Distinct results induced by the network structures and the system parameters are observed. Importantly, the corresponding mechanisms are revealed. PSO influenced by the network structures are induced not only by the change of average path length (APL) of network, but also by the invasion of 1D Winfree loop from the outside linking nodes. Moreover, PSO influenced by the system parameters are determined by the excitation threshold and the minimum 1D Winfree loop. Finally, we confirmed that the excitation threshold and the minimum 1D Winfree loop determined PSO will degenerate as the system size is expanded.
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Affiliation(s)
- Yu Qian
- Nonlinear Research Institute, Baoji University of Arts and Sciences, Baoji, 721007, China.
| | - Fei Liu
- Nonlinear Research Institute, Baoji University of Arts and Sciences, Baoji, 721007, China
| | - Keli Yang
- Nonlinear Research Institute, Baoji University of Arts and Sciences, Baoji, 721007, China
| | - Ge Zhang
- Department of Physics, Lanzhou University of Technology, Lanzhou, 730050, China
| | - Chenggui Yao
- Department of Mathematics, Shaoxing University, Shaoxing, 312000, China
| | - Jun Ma
- Department of Physics, Lanzhou University of Technology, Lanzhou, 730050, China.,King Abdulaziz Univ, Fac Sci, Dept Math, NAAM Res Grp, Jeddah, 21589, Saudi Arabia
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Stratton P, Wiles J. Global segregation of cortical activity and metastable dynamics. Front Syst Neurosci 2015; 9:119. [PMID: 26379514 PMCID: PMC4548222 DOI: 10.3389/fnsys.2015.00119] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2015] [Accepted: 08/07/2015] [Indexed: 11/23/2022] Open
Abstract
Cortical activity exhibits persistent metastable dynamics. Assemblies of neurons transiently couple (integrate) and decouple (segregate) at multiple spatiotemporal scales; both integration and segregation are required to support metastability. Integration of distant brain regions can be achieved through long range excitatory projections, but the mechanism supporting long range segregation is not clear. We argue that the thalamocortical matrix connections, which project diffusely from the thalamus to the cortex and have long been thought to support cortical gain control, play an equally-important role in cortical segregation. We present a computational model of the diffuse thalamocortical loop, called the competitive cross-coupling (CXC) spiking network. Simulations of the model show how different levels of tonic input from the brainstem to the thalamus could control dynamical complexity in the cortex, directing transitions between sleep, wakefulness and high attention or vigilance. The model also explains how mutually-exclusive activity could arise across large portions of the cortex, such as between the default-mode and task-positive networks. It is robust to noise but does not require noise to autonomously generate metastability. We conclude that the long range segregation observed in brain activity and required for global metastable dynamics could be provided by the thalamocortical matrix, and is strongly modulated by brainstem input to the thalamus.
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Affiliation(s)
- Peter Stratton
- Queensland Brain Institute, The University of Queensland Brisbane, QLD, Australia ; Centre for Clinical Research, The University of Queensland Brisbane, QLD, Australia
| | - Janet Wiles
- School of Information Technology and Electrical Engineering, The University of Queensland Brisbane, QLD, Australia
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Tomov P, Pena RFO, Zaks MA, Roque AC. Sustained oscillations, irregular firing, and chaotic dynamics in hierarchical modular networks with mixtures of electrophysiological cell types. Front Comput Neurosci 2014; 8:103. [PMID: 25228879 PMCID: PMC4151042 DOI: 10.3389/fncom.2014.00103] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2014] [Accepted: 08/13/2014] [Indexed: 11/13/2022] Open
Abstract
The cerebral cortex exhibits neural activity even in the absence of external stimuli. This self-sustained activity is characterized by irregular firing of individual neurons and population oscillations with a broad frequency range. Questions that arise in this context, are: What are the mechanisms responsible for the existence of neuronal spiking activity in the cortex without external input? Do these mechanisms depend on the structural organization of the cortical connections? Do they depend on intrinsic characteristics of the cortical neurons? To approach the answers to these questions, we have used computer simulations of cortical network models. Our networks have hierarchical modular architecture and are composed of combinations of neuron models that reproduce the firing behavior of the five main cortical electrophysiological cell classes: regular spiking (RS), chattering (CH), intrinsically bursting (IB), low threshold spiking (LTS), and fast spiking (FS). The population of excitatory neurons is built of RS cells (always present) and either CH or IB cells. Inhibitory neurons belong to the same class, either LTS or FS. Long-lived self-sustained activity states in our network simulations display irregular single neuron firing and oscillatory activity similar to experimentally measured ones. The duration of self-sustained activity strongly depends on the initial conditions, suggesting a transient chaotic regime. Extensive analysis of the self-sustained activity states showed that their lifetime expectancy increases with the number of network modules and is favored when the network is composed of excitatory neurons of the RS and CH classes combined with inhibitory neurons of the LTS class. These results indicate that the existence and properties of the self-sustained cortical activity states depend on both the topology of the network and the neuronal mixture that comprises the network.
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Affiliation(s)
- Petar Tomov
- Institute of Mathematics, Humboldt University of Berlin Berlin, Germany
| | - Rodrigo F O Pena
- Laboratory of Neural Systems, Department of Physics, School of Philosophy, Sciences and Letters of Ribeirão Preto, University of São Paulo Ribeirão Preto, Brazil
| | - Michael A Zaks
- Institute of Mathematics, Humboldt University of Berlin Berlin, Germany
| | - Antonio C Roque
- Laboratory of Neural Systems, Department of Physics, School of Philosophy, Sciences and Letters of Ribeirão Preto, University of São Paulo Ribeirão Preto, Brazil
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Qian Y. Emergence of self-sustained oscillations in excitable Erdös-Rényi random networks. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:032807. [PMID: 25314482 DOI: 10.1103/physreve.90.032807] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2014] [Indexed: 06/04/2023]
Abstract
We investigate the emergence of self-sustained oscillations in excitable Erdös-Rényi random networks (EERRNs). Interestingly, periodical self-sustained oscillations have been found at a moderate connection probability P. For smaller or larger P, the system evolves into a homogeneous rest state with distinct mechanisms. One-dimensional Winfree loops are discovered as the sources to maintain the oscillations. Moreover, by analyzing these oscillation sources, we propose two criteria to explain the spatiotemporal dynamics obtained in EERRNs. Finally, the two critical connection probabilities for which self-sustained oscillations can emerge are approximately predicted based on these two criteria.
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Affiliation(s)
- Yu Qian
- Nonlinear Research Institute, Baoji University of Arts and Sciences, Baoji 721007, China
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Hall D, Kuhlmann L. Mechanisms of seizure propagation in 2-dimensional centre-surround recurrent networks. PLoS One 2013; 8:e71369. [PMID: 23967201 PMCID: PMC3742758 DOI: 10.1371/journal.pone.0071369] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2011] [Accepted: 06/29/2013] [Indexed: 11/19/2022] Open
Abstract
Understanding how seizures spread throughout the brain is an important problem in the treatment of epilepsy, especially for implantable devices that aim to avert focal seizures before they spread to, and overwhelm, the rest of the brain. This paper presents an analysis of the speed of propagation in a computational model of seizure-like activity in a 2-dimensional recurrent network of integrate-and-fire neurons containing both excitatory and inhibitory populations and having a difference of Gaussians connectivity structure, an approximation to that observed in cerebral cortex. In the same computational model network, alternative mechanisms are explored in order to simulate the range of seizure-like activity propagation speeds (0.1-100 mm/s) observed in two animal-slice-based models of epilepsy: (1) low extracellular [Formula: see text], which creates excess excitation and (2) introduction of gamma-aminobutyric acid (GABA) antagonists, which reduce inhibition. Moreover, two alternative connection topologies are considered: excitation broader than inhibition, and inhibition broader than excitation. It was found that the empirically observed range of propagation velocities can be obtained for both connection topologies. For the case of the GABA antagonist model simulation, consistent with other studies, it was found that there is an effective threshold in the degree of inhibition below which waves begin to propagate. For the case of the low extracellular [Formula: see text] model simulation, it was found that activity-dependent reductions in inhibition provide a potential explanation for the emergence of slowly propagating waves. This was simulated as a depression of inhibitory synapses, but it may also be achieved by other mechanisms. This work provides a localised network understanding of the propagation of seizures in 2-dimensional centre-surround networks that can be tested empirically.
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Affiliation(s)
- David Hall
- Victoria Research Labs, National ICT Australia, Parkville, Victoria, Australia
- Department of Electrical and Electronic Engineering, The University of Melbourne, Parkville, Victoria, Australia
| | - Levin Kuhlmann
- Department of Electrical and Electronic Engineering, The University of Melbourne, Parkville, Victoria, Australia
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Paprocki B, Szczepanski J. Transmission efficiency in ring, brain inspired neuronal networks. Information and energetic aspects. Brain Res 2013; 1536:135-43. [PMID: 23891793 DOI: 10.1016/j.brainres.2013.07.024] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2013] [Revised: 07/15/2013] [Accepted: 07/16/2013] [Indexed: 11/19/2022]
Abstract
Organisms often evolve as compromises, and many of these compromises can be expressed in terms of energy efficiency. Thus, many authors analyze energetic costs processes during information transmission in the brain. In this paper we study information transmission rate per energy used in a class of ring, brain inspired neural networks, which we assume to involve components like excitatory and inhibitory neurons or long-range connections. Choosing model of neuron we followed a probabilistic approach proposed by Levy and Baxter (2002), which contains all essential qualitative mechanisms participating in the transmission process and provides results consistent with physiologically observed values. Our research shows that all network components, in broad range of conditions, significantly improve the information-energetic efficiency. It turned out that inhibitory neurons can improve the information-energetic transmission efficiency by 50%, while long-range connections can improve the efficiency even by 70%. We also found that the most effective is the network with the smallest size: we observed that two times increase of the size can cause even three times decrease of the information-energetic efficiency. This article is part of a Special Issue entitled Neural Coding 2012.
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Affiliation(s)
- Bartosz Paprocki
- Institute of Mechanics and Applied Computer Science, Kazimierz Wielki University, Bydgoszcz, Kopernika 1, Poland.
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Rothkegel A, Lehnertz K. Conedy: a scientific tool to investigate complex network dynamics. CHAOS (WOODBURY, N.Y.) 2012; 22:013125. [PMID: 22463001 DOI: 10.1063/1.3685527] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
We present Conedy, a performant scientific tool to numerically investigate dynamics on complex networks. Conedy allows to create networks and provides automatic code generation and compilation to ensure performant treatment of arbitrary node dynamics. Conedy can be interfaced via an internal script interpreter or via a Python module.
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Affiliation(s)
- Alexander Rothkegel
- Department of Epileptology, University of Bonn, Sigmund-Freud-Str. 25, 53105 Bonn, Germany.
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Fung CCA, Wong KYM, Wang H, Wu S. Dynamical synapses enhance neural information processing: gracefulness, accuracy, and mobility. Neural Comput 2012; 24:1147-85. [PMID: 22295986 DOI: 10.1162/neco_a_00269] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Experimental data have revealed that neuronal connection efficacy exhibits two forms of short-term plasticity: short-term depression (STD) and short-term facilitation (STF). They have time constants residing between fast neural signaling and rapid learning and may serve as substrates for neural systems manipulating temporal information on relevant timescales. This study investigates the impact of STD and STF on the dynamics of continuous attractor neural networks and their potential roles in neural information processing. We find that STD endows the network with slow-decaying plateau behaviors: the network that is initially being stimulated to an active state decays to a silent state very slowly on the timescale of STD rather than on that of neuralsignaling. This provides a mechanism for neural systems to hold sensory memory easily and shut off persistent activities gracefully. With STF, we find that the network can hold a memory trace of external inputs in the facilitated neuronal interactions, which provides a way to stabilize the network response to noisy inputs, leading to improved accuracy in population decoding. Furthermore, we find that STD increases the mobility of the network states. The increased mobility enhances the tracking performance of the network in response to time-varying stimuli, leading to anticipative neural responses. In general, we find that STD and STP tend to have opposite effects on network dynamics and complementary computational advantages, suggesting that the brain may employ a strategy of weighting them differentially depending on the computational purpose.
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Affiliation(s)
- C C Alan Fung
- Department of Physics, Hong Kong University of Science and Technology, Hong Kong, China.
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