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Bijsterbosch JD, Farahibozorg SR, Glasser MF, Van Essen D, Snyder LH, Woolrich MW, Smith SM. Evaluating functional brain organization in individuals and identifying contributions to network overlap. IMAGING NEUROSCIENCE (CAMBRIDGE, MASS.) 2023; 1:10.1162/imag_a_00046. [PMID: 40017584 PMCID: PMC11867625 DOI: 10.1162/imag_a_00046] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 03/01/2025]
Abstract
Individual differences in the spatial organization of resting-state networks have received increased attention in recent years. Measures of individual-specific spatial organization of brain networks and overlapping network organization have been linked to important behavioral and clinical traits and are therefore potential biomarker targets for personalized psychiatry approaches. To better understand individual-specific spatial brain organization, this paper addressed three key goals. First, we determined whether it is possible to reliably estimate weighted (non-binarized) resting-state network maps using data from only a single individual, while also maintaining maximum spatial correspondence across individuals. Second, we determined the degree of spatial overlap between distinct networks, using test-retest and twin data. Third, we systematically tested multiple hypotheses (spatial mixing, temporal switching, and coupling) as candidate explanations for why networks overlap spatially. To estimate weighted network organization, we adopt the Probabilistic Functional Modes (PROFUMO) algorithm, which implements a Bayesian framework with hemodynamic and connectivity priors to supplement optimization for spatial sparsity/independence. Our findings showed that replicable individual-specific estimates of weighted resting-state networks can be derived using high-quality fMRI data within individual subjects. Network organization estimates using only data from each individual subject closely resembled group-informed network estimates (which was not explicitly modeled in our individual-specific analyses), suggesting that cross-subject correspondence was largely maintained. Furthermore, our results confirmed the presence of spatial overlap in network organization, which was replicable across sessions within individuals and in monozygotic twin pairs. Intriguingly, our findings provide evidence that overlap between 2-network pairs is indicative of coupling. These results suggest that regions of network overlap concurrently process information from both contributing networks, potentially pointing to the role of overlapping network organization in the integration of information across multiple brain systems.
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Affiliation(s)
- Janine D Bijsterbosch
- Department of Radiology, Washington University School of Medicine, Saint Louis, Missouri, United States
| | | | - Matthew F Glasser
- Department of Radiology, Washington University School of Medicine, Saint Louis, Missouri, United States
- Department of Neuroscience, Washington University School of Medicine, Saint Louis, Missouri, United States
| | - David Van Essen
- Department of Neuroscience, Washington University School of Medicine, Saint Louis, Missouri, United States
| | - Lawrence H Snyder
- Department of Neuroscience, Washington University School of Medicine, Saint Louis, Missouri, United States
| | - Mark W Woolrich
- Oxford Centre for Human Brain Activity, Wellcome Centre for Integrative Neuroimaging, Department of Psychiatry, University of Oxford, Oxford, United Kingdom
| | - Stephen M Smith
- Wellcome Centre for Integrative Neuroimaging (WIN FMRIB), Oxford University, Oxford, United Kingdom
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Toschi N, Duggento A, Barbieri R, Garcia RG, Fisher HP, Kettner NW, Napadow V, Sclocco R. Causal influence of brainstem response to transcutaneous vagus nerve stimulation on cardiovagal outflow. Brain Stimul 2023; 16:1557-1565. [PMID: 37827358 PMCID: PMC10809655 DOI: 10.1016/j.brs.2023.10.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 10/06/2023] [Accepted: 10/09/2023] [Indexed: 10/14/2023] Open
Abstract
BACKGROUND The autonomic response to transcutaneous auricular vagus nerve stimulation (taVNS) has been linked to the engagement of brainstem circuitry modulating autonomic outflow. However, the physiological mechanisms supporting such efferent vagal responses are not well understood, particularly in humans. HYPOTHESIS We present a paradigm for estimating directional brain-heart interactions in response to taVNS. We propose that our approach is able to identify causal links between the activity of brainstem nuclei involved in autonomic control and cardiovagal outflow. METHODS We adopt an approach based on a recent reformulation of Granger causality that includes permutation-based, nonparametric statistics. The method is applied to ultrahigh field (7T) functional magnetic resonance imaging (fMRI) data collected on healthy subjects during taVNS. RESULTS Our framework identified taVNS-evoked functional brainstem responses with superior sensitivity compared to prior conventional approaches, confirming causal links between taVNS stimulation and fMRI response in the nucleus tractus solitarii (NTS). Furthermore, our causal approach elucidated potential mechanisms by which information is relayed between brainstem nuclei and cardiovagal, i.e., high-frequency heart rate variability, in response to taVNS. Our findings revealed that key brainstem nuclei, known from animal models to be involved in cardiovascular control, exert a causal influence on taVNS-induced cardiovagal outflow in humans. CONCLUSION Our causal approach allowed us to noninvasively evaluate directional interactions between fMRI BOLD signals from brainstem nuclei and cardiovagal outflow.
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Affiliation(s)
- Nicola Toschi
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA; Department of Biomedicine and Prevention, University of Rome Tor Vergata, Rome., Italy.
| | - Andrea Duggento
- Department of Biomedicine and Prevention, University of Rome Tor Vergata, Rome., Italy
| | - Riccardo Barbieri
- Department of Electronics, Information, and Bioengineering, Politecnico di Milano, Milan, Italy
| | - Ronald G Garcia
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA
| | - Harrison P Fisher
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA
| | - Norman W Kettner
- Department of Radiology, Logan University, Chesterfield, MO, USA
| | - Vitaly Napadow
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA; Department of Radiology, Logan University, Chesterfield, MO, USA; Scott Schoen and Nancy Adams Discovery Center for Recovery from Chronic Pain, Spaulding Rehabilitation Network, Harvard Medical School, Boston, MA, USA
| | - Roberta Sclocco
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA; Department of Radiology, Logan University, Chesterfield, MO, USA; Scott Schoen and Nancy Adams Discovery Center for Recovery from Chronic Pain, Spaulding Rehabilitation Network, Harvard Medical School, Boston, MA, USA
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Bijsterbosch JD, Farahibozorg SR, Glasser MF, Essen DV, Snyder LH, Woolrich MW, Smith SM. Evaluating functional brain organization in individuals and identifying contributions to network overlap. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.21.558809. [PMID: 37790508 PMCID: PMC10542549 DOI: 10.1101/2023.09.21.558809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/05/2023]
Abstract
Individual differences in the spatial organization of resting state networks have received increased attention in recent years. Measures of individual-specific spatial organization of brain networks and overlapping network organization have been linked to important behavioral and clinical traits and are therefore potential biomarker targets for personalized psychiatry approaches. To better understand individual-specific spatial brain organization, this paper addressed three key goals. First, we determined whether it is possible to reliably estimate weighted (non-binarized) resting state network maps using data from only a single individual, while also maintaining maximum spatial correspondence across individuals. Second, we determined the degree of spatial overlap between distinct networks, using test-retest and twin data. Third, we systematically tested multiple hypotheses (spatial mixing, temporal switching, and coupling) as candidate explanations for why networks overlap spatially. To estimate weighted network organization, we adopt the Probabilistic Functional Modes (PROFUMO) algorithm, which implements a Bayesian framework with hemodynamic and connectivity priors to supplement optimization for spatial sparsity/independence. Our findings showed that replicable individual-specific estimates of weighted resting state networks can be derived using high quality fMRI data within individual subjects. Network organization estimates using only data from each individual subject closely resembled group-informed network estimates (which was not explicitly modeled in our individual-specific analyses), suggesting that cross-subject correspondence was largely maintained. Furthermore, our results confirmed the presence of spatial overlap in network organization, which was replicable across sessions within individuals and in monozygotic twin pairs. Intriguingly, our findings provide evidence that network overlap is indicative of linear additive coupling. These results suggest that regions of network overlap concurrently process information from all contributing networks, potentially pointing to the role of overlapping network organization in the integration of information across multiple brain systems.
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Affiliation(s)
- Janine D Bijsterbosch
- Department of Radiology, Washington University School of Medicine, Saint Louis, Missouri 63110, USA
| | | | - Matthew F Glasser
- Department of Radiology, Washington University School of Medicine, Saint Louis, Missouri 63110, USA
- Department of Neuroscience, Washington University School of Medicine, Saint Louis, Missouri 63110, USA
| | - David Van Essen
- Department of Neuroscience, Washington University School of Medicine, Saint Louis, Missouri 63110, USA
| | - Lawrence H Snyder
- Department of Neuroscience, Washington University School of Medicine, Saint Louis, Missouri 63110, USA
| | - Mark W Woolrich
- Oxford Centre for Human Brain Activity, Wellcome Centre for Integrative Neuroimaging, Department of Psychiatry, University of Oxford, Oxford, UK
| | - Stephen M Smith
- Wellcome Centre for Integrative Neuroimaging (WIN FMRIB), Oxford University, Oxford, United Kingdom
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Tik N, Gal S, Madar A, Ben-David T, Bernstein-Eliav M, Tavor I. Generalizing prediction of task-evoked brain activity across datasets and populations. Neuroimage 2023; 276:120213. [PMID: 37268097 DOI: 10.1016/j.neuroimage.2023.120213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 05/28/2023] [Accepted: 05/30/2023] [Indexed: 06/04/2023] Open
Abstract
Predictions of task-based functional magnetic resonance imaging (fMRI) from task-free resting-state (rs) fMRI have gained popularity over the past decade. This method holds a great promise for studying individual variability in brain function without the need to perform highly demanding tasks. However, in order to be broadly used, prediction models must prove to generalize beyond the dataset they were trained on. In this work, we test the generalizability of prediction of task-fMRI from rs-fMRI across sites, MRI vendors and age-groups. Moreover, we investigate the data requirements for successful prediction. We use the Human Connectome Project (HCP) dataset to explore how different combinations of training sample sizes and number of fMRI datapoints affect prediction success in various cognitive tasks. We then apply models trained on HCP data to predict brain activations in data from a different site, a different MRI vendor (Phillips vs. Siemens scanners) and a different age group (children from the HCP-development project). We demonstrate that, depending on the task, a training set of approximately 20 participants with 100 fMRI timepoints each yields the largest gain in model performance. Nevertheless, further increasing sample size and number of timepoints results in significantly improved predictions, until reaching approximately 450-600 training participants and 800-1000 timepoints. Overall, the number of fMRI timepoints influences prediction success more than the sample size. We further show that models trained on adequate amounts of data successfully generalize across sites, vendors and age groups and provide predictions that are both accurate and individual-specific. These findings suggest that large-scale publicly available datasets may be utilized to study brain function in smaller, unique samples.
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Affiliation(s)
- Niv Tik
- Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Shachar Gal
- Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Asaf Madar
- Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Tamar Ben-David
- Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Michal Bernstein-Eliav
- Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Ido Tavor
- Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel; Strauss Center for Computational Neuroimaging, Tel Aviv University, Tel Aviv, Israel.
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5
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Wein S, Schüller A, Tomé AM, Malloni WM, Greenlee MW, Lang EW. Forecasting brain activity based on models of spatiotemporal brain dynamics: A comparison of graph neural network architectures. Netw Neurosci 2022; 6:665-701. [PMID: 36607180 PMCID: PMC9810370 DOI: 10.1162/netn_a_00252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 05/02/2022] [Indexed: 01/10/2023] Open
Abstract
Comprehending the interplay between spatial and temporal characteristics of neural dynamics can contribute to our understanding of information processing in the human brain. Graph neural networks (GNNs) provide a new possibility to interpret graph-structured signals like those observed in complex brain networks. In our study we compare different spatiotemporal GNN architectures and study their ability to model neural activity distributions obtained in functional MRI (fMRI) studies. We evaluate the performance of the GNN models on a variety of scenarios in MRI studies and also compare it to a VAR model, which is currently often used for directed functional connectivity analysis. We show that by learning localized functional interactions on the anatomical substrate, GNN-based approaches are able to robustly scale to large network studies, even when available data are scarce. By including anatomical connectivity as the physical substrate for information propagation, such GNNs also provide a multimodal perspective on directed connectivity analysis, offering a novel possibility to investigate the spatiotemporal dynamics in brain networks.
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Affiliation(s)
- S. Wein
- CIML, Biophysics, University of Regensburg, Regensburg, Germany,Experimental Psychology, University of Regensburg, Regensburg, Germany,* Corresponding Author:
| | - A. Schüller
- CIML, Biophysics, University of Regensburg, Regensburg, Germany
| | - A. M. Tomé
- IEETA, DETI, Universidade de Aveiro, Aveiro, Portugal
| | - W. M. Malloni
- Experimental Psychology, University of Regensburg, Regensburg, Germany
| | - M. W. Greenlee
- Experimental Psychology, University of Regensburg, Regensburg, Germany
| | - E. W. Lang
- CIML, Biophysics, University of Regensburg, Regensburg, Germany
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Gee DG, Hanson C, Caglar LR, Fareri DS, Gabard-Durnam LJ, Mills-Finnerty C, Goff B, Caldera CJ, Lumian DS, Flannery J, Hanson SJ, Tottenham N. Experimental evidence for a child-to-adolescent switch in human amygdala-prefrontal cortex communication: A cross-sectional pilot study. Dev Sci 2022; 25:e13238. [PMID: 35080089 PMCID: PMC9232876 DOI: 10.1111/desc.13238] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 12/20/2021] [Accepted: 01/02/2022] [Indexed: 11/30/2022]
Abstract
Interactions between the amygdala and prefrontal cortex are fundamental to human emotion. Despite the central role of frontoamygdala communication in adult emotional learning and regulation, little is known about how top-down control emerges during human development. In the present cross-sectional pilot study, we experimentally manipulated prefrontal engagement to test its effects on the amygdala during development. Inducing dorsal anterior cingulate cortex (dACC) activation resulted in developmentally-opposite effects on amygdala reactivity during childhood versus adolescence, such that dACC activation was followed by increased amygdala reactivity in childhood but reduced amygdala reactivity in adolescence. Bayesian network analyses revealed an age-related switch between childhood and adolescence in the nature of amygdala connectivity with the dACC and ventromedial PFC (vmPFC). Whereas adolescence was marked by information flow from dACC and vmPFC to amygdala (consistent with that observed in adults), the reverse information flow, from the amygdala to dACC and vmPFC, was dominant in childhood. The age-related switch in information flow suggests a potential shift from bottom-up co-excitatory to top-down regulatory frontoamygdala connectivity and may indicate a profound change in the circuitry supporting maturation of emotional behavior. These findings provide novel insight into the developmental construction of amygdala-cortical connections and implications for the ways in which childhood experiences may influence subsequent prefrontal function.
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Affiliation(s)
- Dylan G. Gee
- Yale University, Department of Psychology, 2 Hillhouse Avenue, New Haven, CT 06511
- To whom correspondence should be addressed: ,
| | - Catherine Hanson
- Rutgers University, Department of Psychology, 101 Warren Street, Newark, NJ 07102
| | - Leyla Roksan Caglar
- Rutgers University, Department of Psychology, 101 Warren Street, Newark, NJ 07102
| | - Dominic S. Fareri
- Adelphi University, Department of Psychology, Blodgett Hall, Garden City, NY 11530
| | | | | | - Bonnie Goff
- University of California, Los Angeles, Department of Psychology, 1285 Franz Hall, Los Angeles, CA 90095
| | - Christina J. Caldera
- University of California, Los Angeles, Department of Psychology, 1285 Franz Hall, Los Angeles, CA 90095
| | - Daniel S. Lumian
- University of Denver, Department of Psychology, 2155 S. Race Street, Denver, CO 80210
| | - Jessica Flannery
- University of North Carolina, Chapel Hill, Department of Psychology, 235 E. Cameron Ave, Chapel Hill, NC 27599
| | - Stephen J. Hanson
- Rutgers University, Department of Psychology, 101 Warren Street, Newark, NJ 07102
| | - Nim Tottenham
- Columbia University, Department of Psychology, 406 Schermerhorn Hall, 1190 Amsterdam Avenue, New York, NY 10027
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Leicht G, Björklund J, Vauth S, Mußmann M, Haaf M, Steinmann S, Rauh J, Mulert C. Gamma-band synchronisation in a frontotemporal auditory information processing network. Neuroimage 2021; 239:118307. [PMID: 34174389 DOI: 10.1016/j.neuroimage.2021.118307] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 05/25/2021] [Accepted: 06/23/2021] [Indexed: 01/22/2023] Open
Abstract
Neural oscillations are fundamental mechanisms of the human brain that enable coordinated activity of different brain regions during perceptual and cognitive processes. A frontotemporal network generated by means of gamma oscillations and comprising the auditory cortex (AC) and the anterior cingulate cortex (ACC) has been shown to be involved in the cognitively demanding auditory information processing. This study aims to reveal patterns of functional and effective connectivity within this network in healthy subjects by means of simultaneously recorded electroencephalography (EEG) and functional magnetic resonance imaging (fMRI). We simultaneously recorded EEG and fMRI in 28 healthy subjects during the performance of a cognitively demanding auditory choice reaction task. Connectivity between the ACC and AC was analysed employing EEG and fMRI connectivity measures. We found a significant BOLD signal correlation between the ACC and AC, a significant task-dependant increase of fMRI connectivity (gPPI) and a significant increase in functional coupling in the gamma frequency range between these regions (LPS), which was increased in top-down direction (granger analysis). EEG and fMRI connectivity measures were positively correlated. The results of these study point to a role of a top-down influence of the ACC on the AC executed by means of gamma synchronisation. The replication of fMRI connectivity patterns in simultaneously recorded EEG data and the correlation between connectivity measures from both domains found in our study show, that brain connectivity based on the synchronisation of gamma oscillations is mirrored in fMRI connectivity patterns.
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Affiliation(s)
- Gregor Leicht
- Department of Psychiatry and Psychotherapy, Psychiatry Neuroimaging Branch (PNB), University Medical Center Hamburg-Eppendorf, Martinistr. 52, Hamburg D-20246, Germany.
| | - Jonas Björklund
- Department of Psychiatry and Psychotherapy, Psychiatry Neuroimaging Branch (PNB), University Medical Center Hamburg-Eppendorf, Martinistr. 52, Hamburg D-20246, Germany
| | - Sebastian Vauth
- Department of Psychiatry and Psychotherapy, Psychiatry Neuroimaging Branch (PNB), University Medical Center Hamburg-Eppendorf, Martinistr. 52, Hamburg D-20246, Germany
| | - Marius Mußmann
- Department of Psychiatry and Psychotherapy, Psychiatry Neuroimaging Branch (PNB), University Medical Center Hamburg-Eppendorf, Martinistr. 52, Hamburg D-20246, Germany
| | - Moritz Haaf
- Department of Psychiatry and Psychotherapy, Psychiatry Neuroimaging Branch (PNB), University Medical Center Hamburg-Eppendorf, Martinistr. 52, Hamburg D-20246, Germany
| | - Saskia Steinmann
- Department of Psychiatry and Psychotherapy, Psychiatry Neuroimaging Branch (PNB), University Medical Center Hamburg-Eppendorf, Martinistr. 52, Hamburg D-20246, Germany
| | - Jonas Rauh
- Department of Psychiatry and Psychotherapy, Psychiatry Neuroimaging Branch (PNB), University Medical Center Hamburg-Eppendorf, Martinistr. 52, Hamburg D-20246, Germany
| | - Christoph Mulert
- Department of Psychiatry and Psychotherapy, Psychiatry Neuroimaging Branch (PNB), University Medical Center Hamburg-Eppendorf, Martinistr. 52, Hamburg D-20246, Germany; Center of Psychiatry, Justus-Liebig University, Giessen, Germany
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Anzolin A, Toppi J, Petti M, Cincotti F, Astolfi L. SEED-G: Simulated EEG Data Generator for Testing Connectivity Algorithms. SENSORS (BASEL, SWITZERLAND) 2021; 21:3632. [PMID: 34071124 PMCID: PMC8197139 DOI: 10.3390/s21113632] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Revised: 05/14/2021] [Accepted: 05/19/2021] [Indexed: 11/16/2022]
Abstract
EEG signals are widely used to estimate brain circuits associated with specific tasks and cognitive processes. The testing of connectivity estimators is still an open issue because of the lack of a ground-truth in real data. Existing solutions such as the generation of simulated data based on a manually imposed connectivity pattern or mass oscillators can model only a few real cases with limited number of signals and spectral properties that do not reflect those of real brain activity. Furthermore, the generation of time series reproducing non-ideal and non-stationary ground-truth models is still missing. In this work, we present the SEED-G toolbox for the generation of pseudo-EEG data with imposed connectivity patterns, overcoming the existing limitations and enabling control of several parameters for data simulation according to the user's needs. We first described the toolbox including guidelines for its correct use and then we tested its performances showing how, in a wide range of conditions, datasets composed by up to 60 time series were successfully generated in less than 5 s and with spectral features similar to real data. Then, SEED-G is employed for studying the effect of inter-trial variability Partial Directed Coherence (PDC) estimates, confirming its robustness.
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Affiliation(s)
- Alessandra Anzolin
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02129, USA
- Department of Computer, Control, and Management Engineering, Sapienza University of Rome, 00185 Roma, Italy; (J.T.); (M.P.); (F.C.); (L.A.)
- IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
| | - Jlenia Toppi
- Department of Computer, Control, and Management Engineering, Sapienza University of Rome, 00185 Roma, Italy; (J.T.); (M.P.); (F.C.); (L.A.)
- IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
| | - Manuela Petti
- Department of Computer, Control, and Management Engineering, Sapienza University of Rome, 00185 Roma, Italy; (J.T.); (M.P.); (F.C.); (L.A.)
- IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
| | - Febo Cincotti
- Department of Computer, Control, and Management Engineering, Sapienza University of Rome, 00185 Roma, Italy; (J.T.); (M.P.); (F.C.); (L.A.)
- IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
| | - Laura Astolfi
- Department of Computer, Control, and Management Engineering, Sapienza University of Rome, 00185 Roma, Italy; (J.T.); (M.P.); (F.C.); (L.A.)
- IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
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Mill RD, Winfield EC, Cole MW, Ray S. Structural MRI and functional connectivity features predict current clinical status and persistence behavior in prescription opioid users. NEUROIMAGE-CLINICAL 2021; 30:102663. [PMID: 33866300 PMCID: PMC8060550 DOI: 10.1016/j.nicl.2021.102663] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 03/24/2021] [Accepted: 04/02/2021] [Indexed: 01/10/2023]
Abstract
Prescription opioid use disorder (POUD) has reached epidemic proportions in the United States, raising an urgent need for diagnostic biological tools that can improve predictions of disease characteristics. The use of neuroimaging methods to develop such biomarkers have yielded promising results when applied to neurodegenerative and psychiatric disorders, yet have not been extended to prescription opioid addiction. With this long-term goal in mind, we conducted a preliminary study in this understudied clinical group. Univariate and multivariate approaches to distinguishing between POUD (n = 26) and healthy controls (n = 21) were investigated, on the basis of structural MRI (sMRI) and resting-state functional connectivity (restFC) features. Univariate approaches revealed reduced structural integrity in the subcortical extent of a previously reported addiction-related network in POUD subjects. No reliable univariate between-group differences in cortical structure or edgewise restFC were observed. Contrasting these mixed univariate results, multivariate machine learning classification approaches recovered more statistically reliable group differences, especially when sMRI and restFC features were combined in a multi-modal model (classification accuracy = 66.7%, p < .001). The same multivariate multi-modal approach also yielded reliable prediction of individual differences in a clinically relevant behavioral measure (persistence behavior; predicted-to-actual overlap r = 0.42, p = .009). Our findings suggest that sMRI and restFC measures can be used to reliably distinguish the neural effects of long-term opioid use, and that this endeavor numerically benefits from multivariate predictive approaches and multi-modal feature sets. This can serve as theoretical proof-of-concept for future longitudinal modeling of prognostic POUD characteristics from neuroimaging features, which would have clearer clinical utility.
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Affiliation(s)
- Ravi D Mill
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ 07102, USA
| | - Emily C Winfield
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ 07102, USA
| | - Michael W Cole
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ 07102, USA
| | - Suchismita Ray
- Department of Health Informatics, School of Health Professions, Rutgers Biomedical and Health Sciences, Newark, NJ 07103, USA.
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Mills-Finnerty C, Hanson C, Khadr M, José Hanson S. Computations and Connectivity Underlying Aversive Counterfactuals. Brain Connect 2020; 10:467-478. [PMID: 32842766 DOI: 10.1089/brain.2020.0766] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Background: Mentally simulating counterfactuals (scenarios that have not actually occurred) is a sophisticated human cognitive function underlying creativity, planning, and daydreaming. One example is the "would you rather" game, in which forced choices are made between outlandish negative counterfactuals. Materials and Methods: We measured behavioral and neural correlates while participants made "would you rather" choices framed as approaching or avoiding aversive counterfactual scenarios (e.g., illnesses, car accidents). Results: We found in two independent cohorts that participants were highly susceptible to framing effects when making these decisions, taking significantly longer to respond to approach frames compared with avoidance. Brain imaging showed that choices to approach and avoid resulted in a pattern of activation consistent with a network associated with responding to aversive stimuli, identified via a coordinate-based meta-analysis of 238 studies. Bayesian graph connectivity analysis showed that network connectivity differed by choice frame, with significantly stronger connectivity for approach choices compared with avoidance choices among primarily limbic nodes (putamen, insula, caudate, and amygdala). Computational modeling of behavior revealed that approach frames led to significantly longer nondecision times, increased evidence required to make decisions, and faster evidence accumulation than avoidance frames. Stronger network connectivity between corticostriatal and limbic regions was associated with rate of evidence accumulation and length of nondecision time during approach choices. For avoidance choices, prefrontal connectivity was related to nondecision time. Conclusions: These results suggest that "would you rather" decisions about aversive counterfactuals differentially recruit limbic circuit connectivity based on choice frame. Impact statement We measured brain connectivity and latent cognitive variables underlying aversive counterfactual choices. We found a replicable reaction time effect whereby approach decisions were slower than avoidance decisions. Computational modeling identified that the latent cognitive variable of evidence accumulation was related to strength of connectivity between corticostriatal and limbic nodes during approach decisions. Multidimensional scaling (MDS) and clustering revealed a three-dimensional choice structure that differed between individuals, and between approach and avoidance choices within individuals. Our results suggest that cognitive evaluations of aversive counterfactuals involve flexible representations that can be altered by choice framing. These findings have broad implications for prospective decision making.
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Affiliation(s)
- Colleen Mills-Finnerty
- Palo Alto Veterans Administration Health Care System, Stanford University Department of Psychiatry & Behavioral Science, Palo Alto, California, USA
| | - Catherine Hanson
- Department of Psychology, Rutgers University Newark, New Jersey, USA
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Fernandes TT, Direito B, Sayal A, Pereira J, Andrade A, Castelo-Branco M. The boundaries of state-space Granger causality analysis applied to BOLD simulated data: A comparative modelling and simulation approach. J Neurosci Methods 2020; 341:108758. [PMID: 32416276 DOI: 10.1016/j.jneumeth.2020.108758] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Revised: 04/29/2020] [Accepted: 04/30/2020] [Indexed: 11/29/2022]
Abstract
BACKGROUND The analysis of connectivity has become a fundamental tool in human neuroscience. Granger Causality Mapping is a data-driven method that uses Granger Causality (GC) to assess the existence and direction of influence between signals, based on temporal precedence of information. More recently, a theory of Granger causality has been developed for state-space (SS-GC) processes, but little is known about its statistical validation and application on functional magnetic resonance imaging (fMRI) data. NEW METHOD We explored different multivariate computational frameworks to define the optimal combination for GC estimation. We hypothesized a new heuristic, combining SS-GC with a distinct statistical validation technique, Time Reversed Testing, validating it on synthetic data. We test its performance with a number of experimental parameters, including block structure, sampling frequency, noise and system mean pairwise correlation, using a statistical framework of binary classification. RESULTS We found that SS-GC with time reversed testing outperforms other frameworks. The results validate the application of SS-GC to generative models. When estimating reliable causal relations, SS-GC returns promising results, especially when considering synthetic data with a high impact of noise and sampling rate. CONCLUSIONS In this study, we empirically explored the boundaries of SS-GC with time reversed testing, a data-driven causality analysis framework with potential applicability to fMRI data.
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Affiliation(s)
- Tiago Timóteo Fernandes
- Coimbra Institute for Biomedical Imaging and Translational Research (CIBIT),University of Coimbra, Azinhaga de Santa Comba, 3000-548, Coimbra, Portugal; Institute of Biophysics and Biomedical Engineering, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016, Lisboa, Portugal
| | - Bruno Direito
- Coimbra Institute for Biomedical Imaging and Translational Research (CIBIT),University of Coimbra, Azinhaga de Santa Comba, 3000-548, Coimbra, Portugal; Faculty of Medicine, University of Coimbra, Azinhaga de Santa Comba, 3004-504, Coimbra, Portugal; ICNAS, University of Coimbra, Azinhaga de Santa Comba, 3000-548, Coimbra, Portugal
| | - Alexandre Sayal
- Coimbra Institute for Biomedical Imaging and Translational Research (CIBIT),University of Coimbra, Azinhaga de Santa Comba, 3000-548, Coimbra, Portugal; Siemens Healthineers, Rua Irmãos Siemens, 1 - 1 A, 2720-093, Amadora, Portugal
| | - João Pereira
- Coimbra Institute for Biomedical Imaging and Translational Research (CIBIT),University of Coimbra, Azinhaga de Santa Comba, 3000-548, Coimbra, Portugal
| | - Alexandre Andrade
- Institute of Biophysics and Biomedical Engineering, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016, Lisboa, Portugal
| | - Miguel Castelo-Branco
- Coimbra Institute for Biomedical Imaging and Translational Research (CIBIT),University of Coimbra, Azinhaga de Santa Comba, 3000-548, Coimbra, Portugal; Faculty of Medicine, University of Coimbra, Azinhaga de Santa Comba, 3004-504, Coimbra, Portugal; ICNAS, University of Coimbra, Azinhaga de Santa Comba, 3000-548, Coimbra, Portugal.
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12
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Brain-wide resting-state connectivity regulation by the hippocampus and medial prefrontal cortex is associated with fluid intelligence. Brain Struct Funct 2020; 225:1587-1600. [PMID: 32333100 DOI: 10.1007/s00429-020-02077-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 04/18/2020] [Indexed: 10/24/2022]
Abstract
The connectivity hub property of the hippocampus (HIP) and the medial prefrontal cortex (MPFC) is essential for their widespread involvement in cognition; however, the cooperation mechanism between them is far from clear. Herein, using resting-state functional MRI and Gaussian Bayesian network to describe the directed organizing architecture of the HIP-MPFC pathway with regions in the brain, we demonstrated that the HIP and the MPFC have central roles as the driving hub and aggregating hub, respectively. The status of the HIP and the MPFC is dominant in communications between the HIP and the default-mode network, between the HIP and core neurocognitive networks, including the default-mode, frontoparietal, and salience networks, and between brain-wide representative regions, suggesting a strong and robust central position of the two regions in regulating the dynamics of large-scale brain activity. Furthermore, we found that the directed connectivity and flow from the right HIP to the MPFC is significantly linked to fluid intelligence. Together, these results clarify the different roles of the HIP and the MPFC that jointly contribute to network dynamics and cognitive ability from a data-driven insight via the use of the directed connectivity method.
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13
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Reid AT, Headley DB, Mill RD, Sanchez-Romero R, Uddin LQ, Marinazzo D, Lurie DJ, Valdés-Sosa PA, Hanson SJ, Biswal BB, Calhoun V, Poldrack RA, Cole MW. Advancing functional connectivity research from association to causation. Nat Neurosci 2019; 22:1751-1760. [PMID: 31611705 PMCID: PMC7289187 DOI: 10.1038/s41593-019-0510-4] [Citation(s) in RCA: 180] [Impact Index Per Article: 30.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Accepted: 09/06/2019] [Indexed: 11/09/2022]
Abstract
Cognition and behavior emerge from brain network interactions, such that investigating causal interactions should be central to the study of brain function. Approaches that characterize statistical associations among neural time series-functional connectivity (FC) methods-are likely a good starting point for estimating brain network interactions. Yet only a subset of FC methods ('effective connectivity') is explicitly designed to infer causal interactions from statistical associations. Here we incorporate best practices from diverse areas of FC research to illustrate how FC methods can be refined to improve inferences about neural mechanisms, with properties of causal neural interactions as a common ontology to facilitate cumulative progress across FC approaches. We further demonstrate how the most common FC measures (correlation and coherence) reduce the set of likely causal models, facilitating causal inferences despite major limitations. Alternative FC measures are suggested to immediately start improving causal inferences beyond these common FC measures.
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Affiliation(s)
- Andrew T Reid
- School of Psychology, University of Nottingham, Nottingham, UK
| | - Drew B Headley
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, USA
| | - Ravi D Mill
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, USA
| | - Ruben Sanchez-Romero
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, USA
| | - Lucina Q Uddin
- Department of Psychology, University of Miami, Coral Gables, FL, USA
- Neuroscience Program, University of Miami Miller School of Medicine, Miami, FL, USA
| | | | - Daniel J Lurie
- Department of Psychology, University of California, Berkeley, Berkeley, CA, USA
| | - Pedro A Valdés-Sosa
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, University of Electronic Science and Technology of China, Chengdu, China
- Cuban Neuroscience Center, La Habana, Cuba
| | | | - Bharat B Biswal
- Department of Biomedical Engineering, New Jersey Institute of Technology, Newark, NJ, USA
| | - Vince Calhoun
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS) [Georgia State University, Georgia Institute of Technology, Emory University], Atlanta, GA, USA
| | | | - Michael W Cole
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, USA.
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14
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Altered connectivity of the right anterior insula drives the pain connectome changes in chronic knee osteoarthritis. Pain 2019; 159:929-938. [PMID: 29557928 PMCID: PMC5916486 DOI: 10.1097/j.pain.0000000000001209] [Citation(s) in RCA: 76] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Supplemental Digital Content is Available in the Text. A resting-state functional magnetic resonance imaging study of chronic knee osteoarthritis pain using a range of functional connectivity analyses to better understand brain network changes. Resting-state functional connectivity (FC) has proven a powerful approach to understand the neural underpinnings of chronic pain, reporting altered connectivity in 3 main networks: the default mode network (DMN), central executive network, and the salience network (SN). The interrelation and possible mechanisms of these changes are less well understood in chronic pain. Based on emerging evidence of its role to drive switches between network states, the right anterior insula (rAI, an SN hub) may play a dominant role in network connectivity changes underpinning chronic pain. To test this hypothesis, we used seed-based resting-state FC analysis including dynamic and effective connectivity metrics in 25 people with chronic osteoarthritis (OA) pain and 19 matched healthy volunteers. Compared with controls, participants with painful knee OA presented with increased anticorrelation between the rAI (SN) and DMN regions. Also, the left dorsal prefrontal cortex (central executive network hub) showed more negative FC with the right temporal gyrus. Granger causality analysis revealed increased negative influence of the rAI on the posterior cingulate (DMN) in patients with OA in line with the observed enhanced anticorrelation. Moreover, dynamic FC was lower in the DMN of patients and thus more similar to temporal dynamics of the SN. Together, these findings evidence a widespread network disruption in patients with persistent OA pain and point toward a driving role of the rAI.
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15
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Bielczyk NZ, Uithol S, van Mourik T, Anderson P, Glennon JC, Buitelaar JK. Disentangling causal webs in the brain using functional magnetic resonance imaging: A review of current approaches. Netw Neurosci 2019; 3:237-273. [PMID: 30793082 PMCID: PMC6370462 DOI: 10.1162/netn_a_00062] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Accepted: 06/08/2018] [Indexed: 01/05/2023] Open
Abstract
In the past two decades, functional Magnetic Resonance Imaging (fMRI) has been used to relate neuronal network activity to cognitive processing and behavior. Recently this approach has been augmented by algorithms that allow us to infer causal links between component populations of neuronal networks. Multiple inference procedures have been proposed to approach this research question but so far, each method has limitations when it comes to establishing whole-brain connectivity patterns. In this paper, we discuss eight ways to infer causality in fMRI research: Bayesian Nets, Dynamical Causal Modelling, Granger Causality, Likelihood Ratios, Linear Non-Gaussian Acyclic Models, Patel's Tau, Structural Equation Modelling, and Transfer Entropy. We finish with formulating some recommendations for the future directions in this area.
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Affiliation(s)
- Natalia Z. Bielczyk
- Donders Institute for Brain, Cognition and Behavior, Nijmegen, the Netherlands
- Department of Cognitive Neuroscience, Radboud University Nijmegen Medical Centre, Nijmegen, the Netherlands
| | - Sebo Uithol
- Donders Institute for Brain, Cognition and Behavior, Nijmegen, the Netherlands
- Bernstein Centre for Computational Neuroscience, Charité Universitätsmedizin, Berlin, Germany
| | - Tim van Mourik
- Donders Institute for Brain, Cognition and Behavior, Nijmegen, the Netherlands
- Department of Cognitive Neuroscience, Radboud University Nijmegen Medical Centre, Nijmegen, the Netherlands
| | - Paul Anderson
- Donders Institute for Brain, Cognition and Behavior, Nijmegen, the Netherlands
- Faculty of Science, Radboud University Nijmegen, Nijmegen, the Netherlands
| | - Jeffrey C. Glennon
- Donders Institute for Brain, Cognition and Behavior, Nijmegen, the Netherlands
- Department of Cognitive Neuroscience, Radboud University Nijmegen Medical Centre, Nijmegen, the Netherlands
| | - Jan K. Buitelaar
- Donders Institute for Brain, Cognition and Behavior, Nijmegen, the Netherlands
- Department of Cognitive Neuroscience, Radboud University Nijmegen Medical Centre, Nijmegen, the Netherlands
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16
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Cole MW, Ito T, Schultz D, Mill R, Chen R, Cocuzza C. Task activations produce spurious but systematic inflation of task functional connectivity estimates. Neuroimage 2018; 189:1-18. [PMID: 30597260 DOI: 10.1016/j.neuroimage.2018.12.054] [Citation(s) in RCA: 144] [Impact Index Per Article: 20.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Revised: 12/12/2018] [Accepted: 12/26/2018] [Indexed: 01/21/2023] Open
Abstract
Most neuroscientific studies have focused on task-evoked activations (activity amplitudes at specific brain locations), providing limited insight into the functional relationships between separate brain locations. Task-state functional connectivity (FC) - statistical association between brain activity time series during task performance - moves beyond task-evoked activations by quantifying functional interactions during tasks. However, many task-state FC studies do not remove the first-order effect of task-evoked activations prior to estimating task-state FC. It has been argued that this results in the ambiguous inference "likely active or interacting during the task", rather than the intended inference "likely interacting during the task". Utilizing a neural mass computational model, we verified that task-evoked activations substantially and inappropriately inflate task-state FC estimates, especially in functional MRI (fMRI) data. Various methods attempting to address this problem have been developed, yet the efficacies of these approaches have not been systematically assessed. We found that most standard approaches for fitting and removing mean task-evoked activations were unable to correct these inflated correlations. In contrast, methods that flexibly fit mean task-evoked response shapes effectively corrected the inflated correlations without reducing effects of interest. Results with empirical fMRI data confirmed the model's predictions, revealing activation-induced task-state FC inflation for both Pearson correlation and psychophysiological interaction (PPI) approaches. These results demonstrate that removal of mean task-evoked activations using an approach that flexibly models task-evoked response shape is an important preprocessing step for valid estimation of task-state FC.
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Affiliation(s)
- Michael W Cole
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, 07102, USA.
| | - Takuya Ito
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, 07102, USA; Behavioral and Neural Sciences PhD Program, Rutgers University, Newark, NJ, 07102, USA
| | - Douglas Schultz
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, 07102, USA
| | - Ravi Mill
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, 07102, USA
| | - Richard Chen
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, 07102, USA; Behavioral and Neural Sciences PhD Program, Rutgers University, Newark, NJ, 07102, USA
| | - Carrisa Cocuzza
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, 07102, USA; Behavioral and Neural Sciences PhD Program, Rutgers University, Newark, NJ, 07102, USA
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17
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Efromovich S, Wu J. Wavelet Analysis of Big Data Contaminated by Large Noise in an fMRI Study of Neuroplasticity. Methodol Comput Appl Probab 2018. [DOI: 10.1007/s11009-018-9626-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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18
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Fransson P, Schiffler BC, Thompson WH. Brain network segregation and integration during an epoch-related working memory fMRI experiment. Neuroimage 2018; 178:147-161. [PMID: 29777824 DOI: 10.1016/j.neuroimage.2018.05.040] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2018] [Revised: 05/15/2018] [Accepted: 05/15/2018] [Indexed: 10/16/2022] Open
Abstract
The characterization of brain subnetwork segregation and integration has previously focused on changes that are detectable at the level of entire sessions or epochs of imaging data. In this study, we applied time-varying functional connectivity analysis together with temporal network theory to calculate point-by-point estimates in subnetwork segregation and integration during an epoch-based (2-back, 0-back, baseline) working memory fMRI experiment as well as during resting-state. This approach allowed us to follow task-related changes in subnetwork segregation and integration at a high temporal resolution. At a global level, the cognitively more taxing 2-back epochs elicited an overall stronger response of integration between subnetworks compared to the 0-back epochs. Moreover, the visual, sensorimotor and fronto-parietal subnetworks displayed characteristic and distinct temporal profiles of segregation and integration during the 0- and 2-back epochs. During the interspersed epochs of baseline, several subnetworks, including the visual, fronto-parietal, cingulo-opercular and dorsal attention subnetworks showed pronounced increases in segregation. Using a drift diffusion model we show that the response time for the 2-back trials are correlated with integration for the fronto-parietal subnetwork and correlated with segregation for the visual subnetwork. Our results elucidate the fast-evolving events with regard to subnetwork integration and segregation that occur in an epoch-related task fMRI experiment. Our findings suggest that minute changes in subnetwork integration are of importance for task performance.
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Affiliation(s)
- Peter Fransson
- Department of Clinical Neuroscience, Karolinska Institute, Sweden.
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19
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DSouza AM, Abidin AZ, Chockanathan U, Schifitto G, Wismüller A. Mutual connectivity analysis of resting-state functional MRI data with local models. Neuroimage 2018; 178:210-223. [PMID: 29777828 DOI: 10.1016/j.neuroimage.2018.05.038] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2018] [Revised: 05/11/2018] [Accepted: 05/14/2018] [Indexed: 12/16/2022] Open
Abstract
Functional connectivity analysis of functional MRI (fMRI) can represent brain networks and reveal insights into interactions amongst different brain regions. However, most connectivity analysis approaches adopted in practice are linear and non-directional. In this paper, we demonstrate the advantage of a data-driven, directed connectivity analysis approach called Mutual Connectivity Analysis using Local Models (MCA-LM) that approximates connectivity by modeling nonlinear dependencies of signal interaction, over more conventionally used approaches, such as Pearson's and partial correlation, Patel's conditional dependence measures, etcetera. We demonstrate on realistic simulations of fMRI data that, at long sampling intervals, i.e. high repetition time (TR) of fMRI signals, MCA-LM performs better than or comparable to correlation-based methods and Patel's measures. However, at fast image acquisition rates corresponding to low TR, MCA-LM significantly outperforms these methods. This insight is particularly useful in the light of recent advances in fast fMRI acquisition techniques. Methods that can capture the complex dynamics of brain activity, such as MCA-LM, should be adopted to extract as much information as possible from the improved representation. Furthermore, MCA-LM works very well for simulations generated at weak neuronal interaction strengths, and simulations modeling inhibitory and excitatory connections as it disentangles the two opposing effects between pairs of regions/voxels. Additionally, we demonstrate that MCA-LM is capable of capturing meaningful directed connectivity on experimental fMRI data. Such results suggest that it introduces sufficient complexity into modeling fMRI time-series interactions that simple, linear approaches cannot, while being data-driven, computationally practical and easy to use. In conclusion, MCA-LM can provide valuable insights towards better understanding brain activity.
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Affiliation(s)
- Adora M DSouza
- Department of Electrical Engineering, University of Rochester, Rochester, NY, USA.
| | - Anas Z Abidin
- Department of Biomedical Engineering, University of Rochester, Rochester, NY, USA
| | - Udaysankar Chockanathan
- Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, USA
| | - Giovanni Schifitto
- Department of Neurology, University of Rochester Medical Center, Rochester, NY, USA; Department of Imaging Sciences, University of Rochester, NY, USA
| | - Axel Wismüller
- Department of Electrical Engineering, University of Rochester, Rochester, NY, USA; Department of Biomedical Engineering, University of Rochester, Rochester, NY, USA; Department of Imaging Sciences, University of Rochester, NY, USA; Faculty of Medicine and Institute of Clinical Radiology, Ludwig Maximilians University, Munich, Germany
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20
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Stolyarova A. Solving the Credit Assignment Problem With the Prefrontal Cortex. Front Neurosci 2018; 12:182. [PMID: 29636659 PMCID: PMC5881225 DOI: 10.3389/fnins.2018.00182] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Accepted: 03/06/2018] [Indexed: 12/13/2022] Open
Abstract
In naturalistic multi-cue and multi-step learning tasks, where outcomes of behavior are delayed in time, discovering which choices are responsible for rewards can present a challenge, known as the credit assignment problem. In this review, I summarize recent work that highlighted a critical role for the prefrontal cortex (PFC) in assigning credit where it is due in tasks where only a few of the multitude of cues or choices are relevant to the final outcome of behavior. Collectively, these investigations have provided compelling support for specialized roles of the orbitofrontal (OFC), anterior cingulate (ACC), and dorsolateral prefrontal (dlPFC) cortices in contingent learning. However, recent work has similarly revealed shared contributions and emphasized rich and heterogeneous response properties of neurons in these brain regions. Such functional overlap is not surprising given the complexity of reciprocal projections spanning the PFC. In the concluding section, I overview the evidence suggesting that the OFC, ACC and dlPFC communicate extensively, sharing the information about presented options, executed decisions and received rewards, which enables them to assign credit for outcomes to choices on which they are contingent. This account suggests that lesion or inactivation/inhibition experiments targeting a localized PFC subregion will be insufficient to gain a fine-grained understanding of credit assignment during learning and instead poses refined questions for future research, shifting the focus from focal manipulations to experimental techniques targeting cortico-cortical projections.
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Affiliation(s)
- Alexandra Stolyarova
- Department of Psychology, University of California, Los Angeles, Los Angeles, CA, United States
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21
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22
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Meehan TP, Bressler SL, Tang W, Astafiev SV, Sylvester CM, Shulman GL, Corbetta M. Top-down cortical interactions in visuospatial attention. Brain Struct Funct 2017; 222:3127-3145. [PMID: 28321551 PMCID: PMC5607080 DOI: 10.1007/s00429-017-1390-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Accepted: 02/23/2017] [Indexed: 01/08/2023]
Abstract
The voluntary allocation of visuospatial attention depends upon top-down influences from the frontal eye field (FEF) and intraparietal sulcus (IPS)-the core regions of the dorsal attention network (DAN)-to visual occipital cortex (VOC), and has been further associated with within-DAN influences, particularly from the FEF to IPS. However, the degree to which these influences manifest at rest and are then modulated during anticipatory visuospatial attention tasks remains poorly understood. Here, we measured both undirected and directed functional connectivity (UFC, DFC) between the FEF, IPS, and VOC at rest and during an anticipatory visuospatial attention task, using a slow event-related design. Whereas the comparison between rest and task indicated FC modulations that persisted throughout the task duration, the large number of task trials we collected further enabled us to measure shorter timescale modulations of FC across the trial. Relative to rest, task engagement induced enhancement of both top-down influences from the DAN to VOC, as well as bidirectional influences between the FEF and IPS. These results suggest that task performance induces enhanced interaction within the DAN and a greater top-down influence on VOC. While resting FC generally showed right hemisphere dominance, task-related enhancement favored the left hemisphere, effectively balancing a resting hemispheric asymmetry, particularly within the DAN. On a shorter (within-trial) timescale, VOC-to-DAN and bidirectional FEF-IPS influences were transiently elevated during the anticipatory period of the trial, evincing phasic modulations related to changing attentional demands. In contrast to these task-specific effects, resting and task-related influence patterns were highly correlated, suggesting a predisposing role for resting organization, which requires minimal tonic and phasic modulations for control of visuospatial attention.
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Affiliation(s)
- Timothy P Meehan
- Center for Complex Systems and Brain Sciences, Florida Atlantic University, 777 Glades Road, Boca Raton, FL, 33431, USA
| | - Steven L Bressler
- Center for Complex Systems and Brain Sciences, Florida Atlantic University, 777 Glades Road, Boca Raton, FL, 33431, USA.
- Department of Psychology, Florida Atlantic University, Boca Raton, FL, 33431, USA.
| | - Wei Tang
- Center for Complex Systems and Brain Sciences, Florida Atlantic University, 777 Glades Road, Boca Raton, FL, 33431, USA
| | - Serguei V Astafiev
- Department of Radiology, Washington University School of Medicine, St. Louis, MO, 63110, USA
| | - Chad M Sylvester
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, 63110, USA
| | - Gordon L Shulman
- Department of Neurology, Washington University School of Medicine, St. Louis, MO, 63110, USA
| | - Maurizio Corbetta
- Department of Radiology, Washington University School of Medicine, St. Louis, MO, 63110, USA
- Department of Neurology, Washington University School of Medicine, St. Louis, MO, 63110, USA
- Department of Neurobiology, Washington University School of Medicine, St. Louis, MO, 63110, USA
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23
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Mill RD, Ito T, Cole MW. From connectome to cognition: The search for mechanism in human functional brain networks. Neuroimage 2017; 160:124-139. [PMID: 28131891 DOI: 10.1016/j.neuroimage.2017.01.060] [Citation(s) in RCA: 69] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Revised: 12/17/2016] [Accepted: 01/25/2017] [Indexed: 11/30/2022] Open
Abstract
Recent developments in functional connectivity research have expanded the scope of human neuroimaging, from identifying changes in regional activation amplitudes to detailed mapping of large-scale brain networks. However, linking network processes to a clear role in cognition demands advances in the theoretical frameworks, algorithms, and experimental approaches applied. This would help evolve the field from a descriptive to an explanatory state, by targeting network interactions that can mechanistically account for cognitive effects. In the present review, we provide an explicit framework to aid this search for "network mechanisms", which anchors recent methodological advances in functional connectivity estimation to a renewed emphasis on careful experimental design. We emphasize how this framework can address specific questions in network neuroscience. These span ambiguity over the cognitive relevance of resting-state networks, how to characterize task-evoked and spontaneous network dynamics, how to identify directed or "effective" connections, and how to apply multivariate pattern analysis at the network level. In parallel, we apply the framework to highlight the mechanistic interaction of network components that remain "stable" across task domains and more "flexible" components associated with on-task reconfiguration. By emphasizing the need to structure the use of diverse analytic approaches with sound experimentation, our framework promotes an explanatory mapping between the workings of the cognitive mind and the large-scale network mechanisms of the human brain.
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Affiliation(s)
- Ravi D Mill
- Center for Molecular and Behavioral Neuroscience, Rutgers University, 197 University Ave, Newark, NJ 07120, USA.
| | - Takuya Ito
- Center for Molecular and Behavioral Neuroscience, Rutgers University, 197 University Ave, Newark, NJ 07120, USA
| | - Michael W Cole
- Center for Molecular and Behavioral Neuroscience, Rutgers University, 197 University Ave, Newark, NJ 07120, USA
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24
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Potvin S, Tikàsz A, Lungu O, Stip E, Zaharieva V, Lalonde P, Lipp O, Mendrek A. Impaired Coupling between the Dorsomedial Prefrontal Cortex and the Amygdala in Schizophrenia Smokers Viewing Anti-smoking Images. Front Psychiatry 2017; 8:109. [PMID: 28674507 PMCID: PMC5474956 DOI: 10.3389/fpsyt.2017.00109] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Accepted: 06/06/2017] [Indexed: 12/02/2022] Open
Abstract
BACKGROUND Cigarette smoking is highly prevalent in schizophrenia and is one of the main factors contributing to the significantly decreased life expectancy in this population. Schizophrenia smokers, compared to their counterparts with no comorbid psychiatric disorder, are largely unaware and indifferent to the long-term negative consequences of cigarette smoking. The objective of this study was to determine, for the first time, if these meta-cognitive deficits are associated with neuro-functional alterations in schizophrenia smokers. METHODS Twenty-four smokers with no psychiatric disorder and 21 smokers with schizophrenia (DSM-IV criteria) were scanned using functional magnetic resonance imaging and exposed to anti-smoking images. Granger causality analyses were used to examine the effective connectivity between brain regions found to be significantly activated. RESULTS Across groups, potent activations were observed in the left ventro-lateral prefrontal cortex, the left amygdala (AMG), and the dorsomedial prefrontal cortex (dmPFC). Using the dmPFC as a seed region, we found an abnormal negative connectivity from the dmPFC to the AMG in schizophrenia smokers during the viewing of anti-smoking stimuli. This abnormal connectivity was not present during the viewing of aversive stimuli unrelated to tobacco. DISCUSSION Given the well-established roles of the dmPFC in social cognition and of the AMG in emotional processing, our results suggest that the relative indifference of schizophrenia smokers regarding the negative consequences of tobacco smoking could be explained by a cognitive-affective dissonance.
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Affiliation(s)
- Stéphane Potvin
- Department of Psychiatry, University of Montreal, Montreal, QC, Canada.,Centre de recherche de l'Institut Universitaire en Santé Mentale de Montréal, Montreal, QC, Canada
| | - Andràs Tikàsz
- Department of Psychiatry, University of Montreal, Montreal, QC, Canada.,Centre de recherche de l'Institut Universitaire en Santé Mentale de Montréal, Montreal, QC, Canada
| | - Ovidiu Lungu
- Department of Psychiatry, University of Montreal, Montreal, QC, Canada.,Centre de Recherche de l'Institut Universitaire de Gériatrie de Montreal, Montreal, QC, Canada.,Centre for Research in Aging, Donald Berman Maimonides Geriatric Centre, Montreal, QC, Canada
| | - Emmanuel Stip
- Department of Psychiatry, University of Montreal, Montreal, QC, Canada.,Centre de recherche de l'Institut Universitaire en Santé Mentale de Montréal, Montreal, QC, Canada
| | - Vesséla Zaharieva
- Department of Psychiatry, University of Montreal, Montreal, QC, Canada.,Montreal Neurological Institute and Hospital, McGill University, Montreal, QC, Canada
| | - Pierre Lalonde
- Department of Psychiatry, University of Montreal, Montreal, QC, Canada.,Centre de recherche de l'Institut Universitaire en Santé Mentale de Montréal, Montreal, QC, Canada
| | - Olivier Lipp
- Department of Psychiatry, University of Montreal, Montreal, QC, Canada.,Centre de recherche de l'Institut Universitaire en Santé Mentale de Montréal, Montreal, QC, Canada
| | - Adrianna Mendrek
- Centre de recherche de l'Institut Universitaire en Santé Mentale de Montréal, Montreal, QC, Canada.,Department of Psychology, Bishop's University, Sherbrooke, QC, Canada
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