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Pelzer EA, Sharma A, Florin E. Data-driven MEG analysis to extract fMRI resting-state networks. Hum Brain Mapp 2024; 45:e26644. [PMID: 38445551 PMCID: PMC10915736 DOI: 10.1002/hbm.26644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Revised: 12/19/2023] [Accepted: 02/19/2024] [Indexed: 03/07/2024] Open
Abstract
The electrophysiological basis of resting-state networks (RSN) is still under debate. In particular, no principled mechanism has been determined that is capable of explaining all RSN equally well. While magnetoencephalography (MEG) and electroencephalography are the methods of choice to determine the electrophysiological basis of RSN, no standard analysis pipeline of RSN yet exists. In this article, we compare the two main existing data-driven analysis strategies for extracting RSNs from MEG data and introduce a third approach. The first approach uses phase-amplitude coupling to determine the RSN. The second approach extracts RSN through an independent component analysis of the Hilbert envelope in different frequency bands, while the third new approach uses a singular value decomposition instead. To evaluate these approaches, we compare the MEG-RSN to the functional magnetic resonance imaging (fMRI)-RSN from the same subjects. Overall, it was possible to extract RSN with MEG using all three techniques, which matched the group-specific fMRI-RSN. Interestingly the new approach based on SVD yielded significantly higher correspondence to five out of seven fMRI-RSN than the two existing approaches. Importantly, with this approach, all networks-except for the visual network-had the highest correspondence to the fMRI networks within one frequency band. Thereby we provide further insights into the electrophysiological underpinnings of the fMRI-RSNs. This knowledge will be important for the analysis of the electrophysiological connectome.
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Affiliation(s)
- Esther A. Pelzer
- Institute of Clinical Neuroscience and Medical Psychology, Medical FacultyHeinrich Heine University DüsseldorfDüsseldorfGermany
- Max‐Planck‐Institute for Metabolism Research CologneCologneGermany
| | - Abhinav Sharma
- Institute of Clinical Neuroscience and Medical Psychology, Medical FacultyHeinrich Heine University DüsseldorfDüsseldorfGermany
| | - Esther Florin
- Institute of Clinical Neuroscience and Medical Psychology, Medical FacultyHeinrich Heine University DüsseldorfDüsseldorfGermany
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2
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Menceloglu M, Grabowecky M, Suzuki S. A phase-shifting anterior-posterior network organizes global phase relations. PLoS One 2024; 19:e0296827. [PMID: 38346024 PMCID: PMC10861041 DOI: 10.1371/journal.pone.0296827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 12/19/2023] [Indexed: 02/15/2024] Open
Abstract
Prior research has identified a variety of task-dependent networks that form through inter-regional phase-locking of oscillatory activity that are neural correlates of specific behaviors. Despite ample knowledge of task-specific functional networks, general rules governing global phase relations have not been investigated. To discover such general rules, we focused on phase modularity, measured as the degree to which global phase relations in EEG comprised distinct synchronized clusters interacting with one another at large phase lags. Synchronized clusters were detected with a standard community-detection algorithm, and the degree of phase modularity was quantified by the index q. Notably, we found that the mechanism controlling phase modularity is remarkably simple. A network comprising anterior-posterior long-distance connectivity coherently shifted phase relations from low-angles (|Δθ| < π/4) in low-modularity states (bottom 5% in q) to high-angles (|Δθ| > 3π/4) in high-modularity states (top 5% in q), accounting for fluctuations in phase modularity. This anterior-posterior network may play a fundamental functional role as (1) it controls phase modularity across a broad range of frequencies (3-50 Hz examined) in different behavioral conditions (resting with the eyes closed or watching a silent nature video) and (2) neural interactions (measured as power correlations) in beta-to-gamma bands were consistently elevated in high-modularity states. These results may motivate future investigations into the functional roles of phase modularity as well as the anterior-posterior network that controls it.
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Affiliation(s)
- Melisa Menceloglu
- Department of Psychology, Northwestern University, Evanston, Illinois, United States of America
| | - Marcia Grabowecky
- Department of Psychology, Northwestern University, Evanston, Illinois, United States of America
- Interdepartmental Neuroscience, Northwestern University, Evanston, Illinois, United States of America
| | - Satoru Suzuki
- Department of Psychology, Northwestern University, Evanston, Illinois, United States of America
- Interdepartmental Neuroscience, Northwestern University, Evanston, Illinois, United States of America
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3
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Khayretdinova M, Zakharov I, Pshonkovskaya P, Adamovich T, Kiryasov A, Zhdanov A, Shovkun A. Prediction of brain sex from EEG: using large-scale heterogeneous dataset for developing a highly accurate and interpretable ML model. Neuroimage 2024; 285:120495. [PMID: 38092156 DOI: 10.1016/j.neuroimage.2023.120495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 11/29/2023] [Accepted: 12/10/2023] [Indexed: 12/17/2023] Open
Abstract
This study presents a comprehensive examination of sex-related differences in resting-state electroencephalogram (EEG) data, leveraging two different types of machine learning models to predict an individual's sex. We utilized data from the Two Decades-Brainclinics Research Archive for Insights in Neurophysiology (TDBRAIN) EEG study, affirming that gender prediction can be attained with noteworthy accuracy. The best performing model achieved an accuracy of 85% and an ROC AUC of 89%, surpassing all prior benchmarks set using EEG data and rivaling the top-tier results derived from fMRI studies. A comparative analysis of LightGBM and Deep Convolutional Neural Network (DCNN) models revealed DCNN's superior performance, attributed to its ability to learn complex spatial-temporal patterns in the EEG data and handle large volumes of data effectively. Despite this, interpretability remained a challenge for the DCNN model. The LightGBM interpretability analysis revealed that the most important EEG features for accurate sex prediction were related to left fronto-central and parietal EEG connectivity. We also showed the role of both low (delta and theta) and high (beta and gamma) activity in the accurate sex prediction. These results, however, have to be approached with caution, because it was obtained from a dataset comprised largely of participants with various mental health conditions, which limits the generalizability of the results and necessitates further validation in future studies. . Overall, the study illuminates the potential of interpretable machine learning for sex prediction, alongside highlighting the importance of considering individual differences in prediction sex from brain activity.
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Uehara K, Yasuhara M, Koguchi J, Oku T, Shiotani S, Morise M, Furuya S. Brain network flexibility as a predictor of skilled musical performance. Cereb Cortex 2023; 33:10492-10503. [PMID: 37566918 DOI: 10.1093/cercor/bhad298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Revised: 07/25/2023] [Accepted: 07/26/2023] [Indexed: 08/13/2023] Open
Abstract
Interactions between the body and the environment are dynamically modulated by upcoming sensory information and motor execution. To adapt to this behavioral state-shift, brain activity must also be flexible and possess a large repertoire of brain networks so as to switch them flexibly. Recently, flexible internal brain communications, i.e. brain network flexibility, have come to be recognized as playing a vital role in integrating various sensorimotor information. Therefore, brain network flexibility is one of the key factors that define sensorimotor skill. However, little is known about how flexible communications within the brain characterize the interindividual variation of sensorimotor skill and trial-by-trial variability within individuals. To address this, we recruited skilled musical performers and used a novel approach that combined multichannel-scalp electroencephalography, behavioral measurements of musical performance, and mathematical approaches to extract brain network flexibility. We found that brain network flexibility immediately before initiating the musical performance predicted interindividual differences in the precision of tone timbre when required for feedback control, but not for feedforward control. Furthermore, brain network flexibility in broad cortical regions predicted skilled musical performance. Our results provide novel evidence that brain network flexibility plays an important role in building skilled sensorimotor performance.
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Affiliation(s)
- Kazumasa Uehara
- Neural Information Dynamics Laboratory, Department of Computer Science and Engineering, Toyohashi University of Technology, Toyohashi, Japan
- Sony Computer Science Laboratories Inc, Tokyo 1410022, Japan
| | - Masaki Yasuhara
- Sony Computer Science Laboratories Inc, Tokyo 1410022, Japan
- Neural Engineering Laboratory, Department of Science of Technology Innovation, Nagaoka University of Technology, Nagaoka, Japan
| | - Junya Koguchi
- Sony Computer Science Laboratories Inc, Tokyo 1410022, Japan
- Graduate School of Advanced Mathematical Sciences, Meiji University, Tokyo, Japan
| | | | | | - Masanori Morise
- Sony Computer Science Laboratories Inc, Tokyo 1410022, Japan
- School of Interdisciplinary Mathematical Sciences, Meiji University, Tokyo, Japan
| | - Shinichi Furuya
- Sony Computer Science Laboratories Inc, Tokyo 1410022, Japan
- NeuroPiano Institute, Kyoto 6008086, Japan
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5
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Uddin LQ, Betzel RF, Cohen JR, Damoiseaux JS, De Brigard F, Eickhoff SB, Fornito A, Gratton C, Gordon EM, Laird AR, Larson-Prior L, McIntosh AR, Nickerson LD, Pessoa L, Pinho AL, Poldrack RA, Razi A, Sadaghiani S, Shine JM, Yendiki A, Yeo BTT, Spreng RN. Controversies and progress on standardization of large-scale brain network nomenclature. Netw Neurosci 2023; 7:864-905. [PMID: 37781138 PMCID: PMC10473266 DOI: 10.1162/netn_a_00323] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 05/10/2023] [Indexed: 10/03/2023] Open
Abstract
Progress in scientific disciplines is accompanied by standardization of terminology. Network neuroscience, at the level of macroscale organization of the brain, is beginning to confront the challenges associated with developing a taxonomy of its fundamental explanatory constructs. The Workgroup for HArmonized Taxonomy of NETworks (WHATNET) was formed in 2020 as an Organization for Human Brain Mapping (OHBM)-endorsed best practices committee to provide recommendations on points of consensus, identify open questions, and highlight areas of ongoing debate in the service of moving the field toward standardized reporting of network neuroscience results. The committee conducted a survey to catalog current practices in large-scale brain network nomenclature. A few well-known network names (e.g., default mode network) dominated responses to the survey, and a number of illuminating points of disagreement emerged. We summarize survey results and provide initial considerations and recommendations from the workgroup. This perspective piece includes a selective review of challenges to this enterprise, including (1) network scale, resolution, and hierarchies; (2) interindividual variability of networks; (3) dynamics and nonstationarity of networks; (4) consideration of network affiliations of subcortical structures; and (5) consideration of multimodal information. We close with minimal reporting guidelines for the cognitive and network neuroscience communities to adopt.
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Affiliation(s)
- Lucina Q. Uddin
- Department of Psychiatry and Biobehavioral Sciences and Department of Psychology, University of California, Los Angeles, Los Angeles, CA, USA
| | - Richard F. Betzel
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA
| | - Jessica R. Cohen
- Department of Psychology and Neuroscience, University of North Carolina, Chapel Hill, NC, USA
| | - Jessica S. Damoiseaux
- Institute of Gerontology and Department of Psychology, Wayne State University, Detroit, MI, USA
| | | | - Simon B. Eickhoff
- Institute of Systems Neuroscience, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Alex Fornito
- Turner Institute for Brain and Mental Health, Monash University, Melbourne, Australia
| | - Caterina Gratton
- Department of Psychology, Northwestern University, Evanston, IL, USA
| | - Evan M. Gordon
- Mallinckrodt Institute of Radiology, Washington University, St. Louis, MO, USA
| | - Angela R. Laird
- Department of Physics, Florida International University, Miami, FL, USA
| | - Linda Larson-Prior
- Deptartment of Psychiatry and Department of Neurobiology and Developmental Sciences, University of Arkansas for Medical Sciences, Little Rock, AR, USA
| | - A. Randal McIntosh
- Institute for Neuroscience and Neurotechnology, Simon Fraser University, Vancouver, BC, Canada
| | | | - Luiz Pessoa
- Department of Psychology, University of Maryland, College Park, MD, USA
| | - Ana Luísa Pinho
- Brain and Mind Institute, Western University, London, Ontario, Canada
| | | | - Adeel Razi
- Turner Institute for Brain and Mental Health, Monash University, Melbourne, Australia
| | - Sepideh Sadaghiani
- Department of Psychology, University of Illinois, Urbana Champaign, IL, USA
| | - James M. Shine
- Brain and Mind Center, University of Sydney, Sydney, Australia
| | - Anastasia Yendiki
- Department of Radiology, Massachusetts General Hospital, Boston, MA, USA
| | - B. T. Thomas Yeo
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore
| | - R. Nathan Spreng
- Department of Neurology and Neurosurgery, McGill University, Montreal, Canada
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6
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Singer N, Poker G, Dunsky-Moran N, Nemni S, Reznik Balter S, Doron M, Baker T, Dagher A, Zatorre RJ, Hendler T. Development and validation of an fMRI-informed EEG model of reward-related ventral striatum activation. Neuroimage 2023; 276:120183. [PMID: 37225112 PMCID: PMC10300238 DOI: 10.1016/j.neuroimage.2023.120183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2022] [Revised: 04/06/2023] [Accepted: 05/22/2023] [Indexed: 05/26/2023] Open
Abstract
Reward processing is essential for our mental-health and well-being. In the current study, we developed and validated a scalable, fMRI-informed EEG model for monitoring reward processing related to activation in the ventral-striatum (VS), a significant node in the brain's reward system. To develop this EEG-based model of VS-related activation, we collected simultaneous EEG/fMRI data from 17 healthy individuals while listening to individually-tailored pleasurable music - a highly rewarding stimulus known to engage the VS. Using these cross-modal data, we constructed a generic regression model for predicting the concurrently acquired Blood-Oxygen-Level-Dependent (BOLD) signal from the VS using spectro-temporal features from the EEG signal (termed hereby VS-related-Electrical Finger Print; VS-EFP). The performance of the extracted model was examined using a series of tests that were applied on the original dataset and, importantly, an external validation dataset collected from a different group of 14 healthy individuals who underwent the same EEG/FMRI procedure. Our results showed that the VS-EFP model, as measured by simultaneous EEG, predicted BOLD activation in the VS and additional functionally relevant regions to a greater extent than an EFP model derived from a different anatomical region. The developed VS-EFP was also modulated by musical pleasure and predictive of the VS-BOLD during a monetary reward task, further indicating its functional relevance. These findings provide compelling evidence for the feasibility of using EEG alone to model neural activation related to the VS, paving the way for future use of this scalable neural probing approach in neural monitoring and self-guided neuromodulation.
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Affiliation(s)
- Neomi Singer
- Montreal Neurological Institute, McGill University, 3801 Rue University, Montréal, QC H3A 2B4, Canada; Sagol Brain Institute, Tel-Aviv Sourasky Medical Center, 6 Weizman St. Tel Aviv, 64239, Israel; Sagol school of Neuroscience, Tel-Aviv University, PO Box 39040, Tel Aviv 6997801, Israel
| | - Gilad Poker
- Sagol Brain Institute, Tel-Aviv Sourasky Medical Center, 6 Weizman St. Tel Aviv, 64239, Israel
| | - Netta Dunsky-Moran
- Sagol Brain Institute, Tel-Aviv Sourasky Medical Center, 6 Weizman St. Tel Aviv, 64239, Israel; Sagol school of Neuroscience, Tel-Aviv University, PO Box 39040, Tel Aviv 6997801, Israel
| | - Shlomi Nemni
- Sagol school of Neuroscience, Tel-Aviv University, PO Box 39040, Tel Aviv 6997801, Israel; School of Psychological Sciences, Tel-Aviv University, PO Box 39040, Tel Aviv 6997801, Israel
| | - Shira Reznik Balter
- Sagol Brain Institute, Tel-Aviv Sourasky Medical Center, 6 Weizman St. Tel Aviv, 64239, Israel
| | - Maayan Doron
- Montreal Neurological Institute, McGill University, 3801 Rue University, Montréal, QC H3A 2B4, Canada; Sackler School of Medicine, Tel-Aviv University, PO Box 39040, Tel Aviv 6997801, Israel
| | - Travis Baker
- Montreal Neurological Institute, McGill University, 3801 Rue University, Montréal, QC H3A 2B4, Canada; Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, USA
| | - Alain Dagher
- Montreal Neurological Institute, McGill University, 3801 Rue University, Montréal, QC H3A 2B4, Canada
| | - Robert J Zatorre
- Montreal Neurological Institute, McGill University, 3801 Rue University, Montréal, QC H3A 2B4, Canada; International Laboratory for Brain, Music, and Sound Research (BRAMS), Canada
| | - Talma Hendler
- Sagol Brain Institute, Tel-Aviv Sourasky Medical Center, 6 Weizman St. Tel Aviv, 64239, Israel; Sagol school of Neuroscience, Tel-Aviv University, PO Box 39040, Tel Aviv 6997801, Israel; School of Psychological Sciences, Tel-Aviv University, PO Box 39040, Tel Aviv 6997801, Israel; Sackler School of Medicine, Tel-Aviv University, PO Box 39040, Tel Aviv 6997801, Israel.
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7
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Shen J, Gu X, Fu J, Yao Y, Li Y, Zeng M, Liu Z, Lu C. Virtual reality-induced motor function of the upper extremity and brain activation in stroke: study protocol for a randomized controlled trial. Front Neurol 2023; 14:1094617. [PMID: 37139056 PMCID: PMC10149960 DOI: 10.3389/fneur.2023.1094617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Accepted: 03/16/2023] [Indexed: 05/05/2023] Open
Abstract
Background The benefits of virtual reality (VR)-based rehabilitation were reported in patients after stroke, but there is insufficient evidence about how VR promotes brain activation in the central nervous system. Hence, we designed this study to explore the effects of VR-based intervention on upper extremity motor function and associated brain activation in stroke patients. Methods/design In this single-center, randomized, parallel-group clinical trial with a blinded assessment of outcomes, a total of 78 stroke patients will be assigned randomly to either the VR group or the control group. All stroke patients who have upper extremity motor deficits will be tested with functional magnetic resonance imaging (fMRI), electroencephalography (EEG), and clinical evaluation. Clinical assessment and fMRI will be performed three times on each subject. The primary outcome is the change in performance on the Fugl-Meyer Assessment Upper Extremity Scale (FMA-UE). Secondary outcomes are functional independence measure (FIM), Barthel Index (BI), grip strength, and changes in the blood oxygenation level-dependent (BOLD) effect in the ipsilesional and contralesional primary motor cortex (M1) on the left and right hemispheres assessed with resting-state fMRI (rs-fMRI), task-state fMRI (ts-fMRI), and changes in EEG at the baseline and weeks 4 and 8. Discussion This study aims to provide high-quality evidence for the relationship between upper extremity motor function and brain activation in stroke. In addition, this is the first multimodal neuroimaging study that explores the evidence for neuroplasticity and associated upper motor function recovery after VR in stroke patients. Clinical trial registration Chinese Clinical Trial Registry, identifier: ChiCTR2200063425.
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Xie W, Toll RT, Nelson CA. EEG functional connectivity analysis in the source space. Dev Cogn Neurosci 2022; 56:101119. [PMID: 35716637 PMCID: PMC9204388 DOI: 10.1016/j.dcn.2022.101119] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2021] [Revised: 05/15/2022] [Accepted: 06/06/2022] [Indexed: 11/18/2022] Open
Abstract
There is a growing interest in using electroencephalography (EEG) and source modeling to investigate functional interactions among cortical processes, particularly when dealing with pediatric populations. This paper introduces two pipelines that have been recently used to conduct EEG FC analysis in the cortical source space. The analytic streams of these pipelines can be summarized into the following steps: 1) cortical source reconstruction of high-density EEG data using realistic magnetic resonance imaging (MRI) models created with age-appropriate MRI templates; 2) segmentation of reconstructed source activities into brain regions of interest; and 3) estimation of FC in age-related frequency bands using robust EEG FC measures, such as weighted phase lag index and orthogonalized power envelope correlation. In this paper we demonstrate the two pipelines with resting-state EEG data collected from children at 12 and 36 months of age. We also discuss the advantages and limitations of the methods/techniques integrated into the pipelines. Given there is a need in the research community for open-access analytic toolkits that can be used for pediatric EEG data, programs and codes used for the current analysis are made available to the public.
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Affiliation(s)
- Wanze Xie
- School of Psychological and Cognitive Sciences, Peking University, China; PKU-IDG/McGovern Institute for Brain Research, Peking University, China; Beijing Key Laboratory of Behavior and Mental Health, Peking University, China.
| | - Russell T Toll
- Department of Psychiatry, University of Texas Southwestern Medical Centre at Dallas, USA
| | - Charles A Nelson
- Boston Children's Hospital, Boston, MA, USA; Harvard Medical School, Boston, MA, USA; Harvard Graduate School of Education, Cambridge, MA, USA
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9
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Human electromagnetic and haemodynamic networks systematically converge in unimodal cortex and diverge in transmodal cortex. PLoS Biol 2022; 20:e3001735. [PMID: 35914002 PMCID: PMC9371256 DOI: 10.1371/journal.pbio.3001735] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Revised: 08/11/2022] [Accepted: 06/30/2022] [Indexed: 11/21/2022] Open
Abstract
Whole-brain neural communication is typically estimated from statistical associations among electromagnetic or haemodynamic time-series. The relationship between functional network architectures recovered from these 2 types of neural activity remains unknown. Here, we map electromagnetic networks (measured using magnetoencephalography (MEG)) to haemodynamic networks (measured using functional magnetic resonance imaging (fMRI)). We find that the relationship between the 2 modalities is regionally heterogeneous and systematically follows the cortical hierarchy, with close correspondence in unimodal cortex and poor correspondence in transmodal cortex. Comparison with the BigBrain histological atlas reveals that electromagnetic–haemodynamic coupling is driven by laminar differentiation and neuron density, suggesting that the mapping between the 2 modalities can be explained by cytoarchitectural variation. Importantly, haemodynamic connectivity cannot be explained by electromagnetic activity in a single frequency band, but rather arises from the mixing of multiple neurophysiological rhythms. Correspondence between the two is largely driven by MEG functional connectivity at the beta (15 to 29 Hz) frequency band. Collectively, these findings demonstrate highly organized but only partly overlapping patterns of connectivity in MEG and fMRI functional networks, opening fundamentally new avenues for studying the relationship between cortical microarchitecture and multimodal connectivity patterns. What is the relationship between functional network architectures inferred from electromagnetic and haemodynamic data? This study shows that superposition of electromagnetic networks at canonical frequency bands manifests as highly structured patterns of haemodynamic functional connectivity in the human brain, reflecting systematic variation in cytoarchitecture.
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10
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Warbrick T. Simultaneous EEG-fMRI: What Have We Learned and What Does the Future Hold? SENSORS 2022; 22:s22062262. [PMID: 35336434 PMCID: PMC8952790 DOI: 10.3390/s22062262] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Revised: 03/11/2022] [Accepted: 03/13/2022] [Indexed: 02/01/2023]
Abstract
Simultaneous EEG-fMRI has developed into a mature measurement technique in the past 25 years. During this time considerable technical and analytical advances have been made, enabling valuable scientific contributions to a range of research fields. This review will begin with an introduction to the measurement principles involved in EEG and fMRI and the advantages of combining these methods. The challenges faced when combining the two techniques will then be considered. An overview of the leading application fields where EEG-fMRI has made a significant contribution to the scientific literature and emerging applications in EEG-fMRI research trends is then presented.
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Affiliation(s)
- Tracy Warbrick
- Brain Products GmbH, Zeppelinstrasse 7, 82205 Gilching, Germany
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11
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Idaji MJ, Zhang J, Stephani T, Nolte G, Müller KR, Villringer A, Nikulin VV. Harmoni: a Method for Eliminating Spurious Interactions due to the Harmonic Components in Neuronal Data. Neuroimage 2022; 252:119053. [PMID: 35247548 DOI: 10.1016/j.neuroimage.2022.119053] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 02/09/2022] [Accepted: 03/01/2022] [Indexed: 12/26/2022] Open
Abstract
Cross-frequency synchronization (CFS) has been proposed as a mechanism for integrating spatially and spectrally distributed information in the brain. However, investigating CFS in Magneto- and Electroencephalography (MEG/EEG) is hampered by the presence of spurious neuronal interactions due to the non-sinusoidal waveshape of brain oscillations. Such waveshape gives rise to the presence of oscillatory harmonics mimicking genuine neuronal oscillations. Until recently, however, there has been no methodology for removing these harmonics from neuronal data. In order to address this long-standing challenge, we introduce a novel method (called HARMOnic miNImization - Harmoni) that removes the signal components which can be harmonics of a non-sinusoidal signal. Harmoni's working principle is based on the presence of CFS between harmonic components and the fundamental component of a non-sinusoidal signal. We extensively tested Harmoni in realistic EEG simulations. The simulated couplings between the source signals represented genuine and spurious CFS and within-frequency phase synchronization. Using diverse evaluation criteria, including ROC analyses, we showed that the within- and cross-frequency spurious interactions are suppressed significantly, while the genuine activities are not affected. Additionally, we applied Harmoni to real resting-state EEG data revealing intricate remote connectivity patterns which are usually masked by the spurious connections. Given the ubiquity of non-sinusoidal neuronal oscillations in electrophysiological recordings, Harmoni is expected to facilitate novel insights into genuine neuronal interactions in various research fields, and can also serve as a steppingstone towards the development of further signal processing methods aiming at refining within- and cross-frequency synchronization in electrophysiological recordings.
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Affiliation(s)
- Mina Jamshidi Idaji
- Neurology Department, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany; International Max Planck Research School NeuroCom, Leipzig, Germany; Machine Learning Group, Technical University of Berlin, Berlin, Germany.
| | - Juanli Zhang
- Neurology Department, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany; Department of Neurology, Charité - Universitätsmedizin Berlin, Berlin, Germany.
| | - Tilman Stephani
- Neurology Department, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany; International Max Planck Research School NeuroCom, Leipzig, Germany.
| | - Guido Nolte
- Department of Neurophysiology and Pathophysiology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Klaus-Robert Müller
- Machine Learning Group, Technical University of Berlin, Berlin, Germany; Department of Artificial Intelligence, Korea University, Anam-dong, Seongbuk-gu, Seoul, Republic of Korea; Max Planck Institute for Informatics, Saarbrücken, Germany; Google Research, Brain Team, USA
| | - Arno Villringer
- Neurology Department, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany; Department of Cognitive Neurology, University Hospital Leipzig, Leipzig, Germany
| | - Vadim V Nikulin
- Neurology Department, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany; Centre for Cognition and Decision Making, Institute for Cognitive Neuroscience, National Research University Higher School of Economics, Moscow, Russia; Neurophysics Group, Department of Neurology, Charité-Universitätsmedizin Berlin, Berlin, Germany.
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12
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Sadaghiani S, Brookes MJ, Baillet S. Connectomics of human electrophysiology. Neuroimage 2021; 247:118788. [PMID: 34906715 DOI: 10.1016/j.neuroimage.2021.118788] [Citation(s) in RCA: 43] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 11/03/2021] [Accepted: 12/06/2021] [Indexed: 12/15/2022] Open
Abstract
We present both a scientific overview and conceptual positions concerning the challenges and assets of electrophysiological measurements in the search for the nature and functions of the human connectome. We discuss how the field has been inspired by findings and approaches from functional magnetic resonance imaging (fMRI) and informed by a small number of significant multimodal empirical studies, which show that the canonical networks that are commonplace in fMRI are in fact rooted in electrophysiological processes. This review is also an opportunity to produce a brief, up-to-date critical survey of current data modalities and analytical methods available for deriving both static and dynamic connectomes from electrophysiology. We review hurdles that challenge the significance and impact of current electrophysiology connectome research. We then encourage the field to take a leap of faith and embrace the wealth of electrophysiological signals, despite their apparent, disconcerting complexity. Our position is that electrophysiology connectomics is poised to inform testable mechanistic models of information integration in hierarchical brain networks, constructed from observable oscillatory and aperiodic signal components and their polyrhythmic interactions.
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Affiliation(s)
- Sepideh Sadaghiani
- Department of Psychology, University of Illinois, Urbana-Champaign, IL, United States; Beckman Institute for Advanced Science and Technology, University of Illinois, Urbana-Champaign, IL, United States
| | - Matthew J Brookes
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, University Park, Nottingham NG72RD, United Kingdom
| | - Sylvain Baillet
- McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University, Montreal, QC, Canada
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Babaeeghazvini P, Rueda-Delgado LM, Gooijers J, Swinnen SP, Daffertshofer A. Brain Structural and Functional Connectivity: A Review of Combined Works of Diffusion Magnetic Resonance Imaging and Electro-Encephalography. Front Hum Neurosci 2021; 15:721206. [PMID: 34690718 PMCID: PMC8529047 DOI: 10.3389/fnhum.2021.721206] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2021] [Accepted: 09/10/2021] [Indexed: 11/13/2022] Open
Abstract
Implications of structural connections within and between brain regions for their functional counterpart are timely points of discussion. White matter microstructural organization and functional activity can be assessed in unison. At first glance, however, the corresponding findings appear variable, both in the healthy brain and in numerous neuro-pathologies. To identify consistent associations between structural and functional connectivity and possible impacts for the clinic, we reviewed the literature of combined recordings of electro-encephalography (EEG) and diffusion-based magnetic resonance imaging (MRI). It appears that the strength of event-related EEG activity increases with increased integrity of structural connectivity, while latency drops. This agrees with a simple mechanistic perspective: the nature of microstructural white matter influences the transfer of activity. The EEG, however, is often assessed for its spectral content. Spectral power shows associations with structural connectivity that can be negative or positive often dependent on the frequencies under study. Functional connectivity shows even more variations, which are difficult to rank. This might be caused by the diversity of paradigms being investigated, from sleep and resting state to cognitive and motor tasks, from healthy participants to patients. More challenging, though, is the potential dependency of findings on the kind of analysis applied. While this does not diminish the principal capacity of EEG and diffusion-based MRI co-registration, it highlights the urgency to standardize especially EEG analysis.
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Affiliation(s)
- Parinaz Babaeeghazvini
- Department of Human Movements Sciences, Faculty of Behavioural and Movement Sciences, Amsterdam Movement Science Institute (AMS), Vrije Universiteit Amsterdam, Amsterdam, Netherlands
- Institute for Brain and Behaviour Amsterdam (iBBA), Faculty of Behavioural and Movement Sciences, Vrije Universiteit, Vrije Universiteit Amsterdam, Amsterdam, Netherlands
| | - Laura M. Rueda-Delgado
- Movement Control & Neuroplasticity Research Group, Department of Movement Sciences, KU Leuven, Leuven, Belgium
- Trinity Centre for Biomedical Engineering, Trinity College Dublin, The University of Dublin, Dublin, Ireland
| | - Jolien Gooijers
- Movement Control & Neuroplasticity Research Group, Department of Movement Sciences, KU Leuven, Leuven, Belgium
- KU Leuven Brain Institute (LBI), Leuven, Belgium
| | - Stephan P. Swinnen
- Movement Control & Neuroplasticity Research Group, Department of Movement Sciences, KU Leuven, Leuven, Belgium
- KU Leuven Brain Institute (LBI), Leuven, Belgium
| | - Andreas Daffertshofer
- Department of Human Movements Sciences, Faculty of Behavioural and Movement Sciences, Amsterdam Movement Science Institute (AMS), Vrije Universiteit Amsterdam, Amsterdam, Netherlands
- Institute for Brain and Behaviour Amsterdam (iBBA), Faculty of Behavioural and Movement Sciences, Vrije Universiteit, Vrije Universiteit Amsterdam, Amsterdam, Netherlands
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14
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Scrivener CL. When Is Simultaneous Recording Necessary? A Guide for Researchers Considering Combined EEG-fMRI. Front Neurosci 2021; 15:636424. [PMID: 34267620 PMCID: PMC8276697 DOI: 10.3389/fnins.2021.636424] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 06/01/2021] [Indexed: 11/19/2022] Open
Abstract
Electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) provide non-invasive measures of brain activity at varying spatial and temporal scales, offering different views on brain function for both clinical and experimental applications. Simultaneous recording of these measures attempts to maximize the respective strengths of each method, while compensating for their weaknesses. However, combined recording is not necessary to address all research questions of interest, and experiments may have greater statistical power to detect effects by maximizing the signal-to-noise ratio in separate recording sessions. While several existing papers discuss the reasons for or against combined recording, this article aims to synthesize these arguments into a flow chart of questions that researchers can consider when deciding whether to record EEG and fMRI separately or simultaneously. Given the potential advantages of simultaneous EEG-fMRI, the aim is to provide an initial overview of the most important concepts and to direct readers to relevant literature that will aid them in this decision.
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Affiliation(s)
- Catriona L. Scrivener
- MRC Cognition and Brain Sciences Unit, University of Cambridge, Cambridge, United Kingdom
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15
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Daniel AGS, Hacker CD, Lee JJ, Dierker D, Humphries JB, Shimony JS, Leuthardt EC. Homotopic functional connectivity disruptions in glioma patients are associated with tumor malignancy and overall survival. Neurooncol Adv 2021; 3:vdab176. [PMID: 34988455 PMCID: PMC8694208 DOI: 10.1093/noajnl/vdab176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Background Gliomas exhibit widespread bilateral functional connectivity (FC) alterations that may be associated with tumor grade. Limited studies have examined the connection-level mechanisms responsible for these effects. Given the typically strong FC observed between mirroring/homotopic brain regions in healthy subjects, we hypothesized that homotopic connectivity (HC) is altered in low-grade and high-grade glioma patients and the extent of disruption is associated with tumor grade and predictive of overall survival (OS) in a cohort of de novo high-grade glioma (World Health Organization [WHO] grade 4) patients. Methods We used a mirrored FC-derived cortical parcellation to extract blood-oxygen-level-dependent (BOLD) signals and to quantify FC differences between homotopic pairs in normal-appearing brain in a retrospective cohort of glioma patients and healthy controls. Results Fifty-nine glioma patients (WHO grade 2, n = 9; grade 4 = 50; mean age, 57.5 years) and 30 healthy subjects (mean age, 65.9 years) were analyzed. High-grade glioma patients showed lower HC compared with low-grade glioma patients and healthy controls across several cortical locations and resting-state networks. Connectivity disruptions were also strongly correlated with hemodynamic lags between homotopic regions. Finally, in high-grade glioma patients with known survival times (n = 42), HC in somatomotor and dorsal attention networks were significantly correlated with OS. Conclusions These findings demonstrate an association between tumor grade and HC alterations that may underlie global FC changes and provide prognostic information.
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Affiliation(s)
- Andy G S Daniel
- Department of Biomedical Engineering, McKelvey School of Engineering, Washington University, St. Louis, MO 63130, USA
| | - Carl D Hacker
- Department of Neurological Surgery, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - John J Lee
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Donna Dierker
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Joseph B Humphries
- Department of Biomedical Engineering, McKelvey School of Engineering, Washington University, St. Louis, MO 63130, USA
| | - Joshua S Shimony
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Eric C Leuthardt
- Department of Biomedical Engineering, McKelvey School of Engineering, Washington University, St. Louis, MO 63130, USA
- Department of Neurological Surgery, Washington University School of Medicine, St. Louis, MO 63110, USA
- Department of Neuroscience, Washington University School of Medicine, St. Louis, MO 63110, USA
- Department of Mechanical Engineering and Materials Science, McKelvey School of Engineering, Washington University, St. Louis, MO 63130, USA
- Center for Innovation in Neuroscience and Technology, Washington University School of Medicine, St. Louis, MO 63110, USA
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