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Subramani AK, Ramachandra R, Thote S, Govindaraj V, Vanzara P, Raval R, Raval K. Engineering a recombinant chitinase from the marine bacterium Bacillus aryabhattai with targeted activity on insoluble crystalline chitin for chitin oligomer production. Int J Biol Macromol 2024; 264:130499. [PMID: 38462115 DOI: 10.1016/j.ijbiomac.2024.130499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 02/10/2024] [Accepted: 02/20/2024] [Indexed: 03/12/2024]
Abstract
Chitin, an abundant polysaccharide in India, is primary by-product of the seafood industry. Efficiently converting chitin into valuable products is crucial. Chitinase, transforms chitin into chitin oligomers, holds significant industrial potential. However, the crystalline and insoluble nature of chitin makes the conversion process challenging. In this study, a recombinant chitinase from marine bacteria Bacillus aryabhattai was developed. This enzyme exhibits activity against insoluble chitin substrates, chitin powder and flakes. The chitinase gene was cloned into the pET 23a plasmid and transformed into E. coli Rosetta pLysS. IPTG induction was employed to express chitinase, and purification using Ni-NTA affinity chromatography. Optimal chitinase activity against colloidal chitin was observed in Tris buffer at pH 8, temperature 55°C, with the presence of 400 mM sodium chloride. Enzyme kinetics studies revealed a Vmax of 2000 μmole min-1 and a Km of 4.6 mg mL-1. The highest chitinase activity against insoluble chitin powder and flakes reached 875 U mg-1 and 625 U mg-1, respectively. The chitinase demonstrated inhibition of Candida albicans, Fusarium solani, and Penicillium chrysogenum growth. Thin Layer Chromatography (TLC) and LC-MS analysis confirmed the production of chitin oligomers, chitin trimer, tetramer, pentamer, and hexamer, from chitin powder and flakes using recombinant chitinase.
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Affiliation(s)
- Arun Kumar Subramani
- Department of Chemical Engineering, National Institute of Technology, Karnataka 575025, India
| | - Reshma Ramachandra
- Department of Chemical Engineering, National Institute of Technology, Karnataka 575025, India
| | - Sachin Thote
- Department of Chemical Engineering, National Institute of Technology, Karnataka 575025, India
| | - Vishnupriya Govindaraj
- Department of Chemical Engineering, National Institute of Technology, Karnataka 575025, India
| | - Piyush Vanzara
- Department of Chemical Engineering, Vyavasayi Vidya Pratishthan Engineering College, Rajkot, Gujarat 360005, India
| | - Ritu Raval
- Department of Biotechnology, Manipal Academy of Higher Education (MAHE), Karnataka 576104, India.
| | - Keyur Raval
- Department of Chemical Engineering, National Institute of Technology, Karnataka 575025, India.
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Thakur D, Bairwa A, Dipta B, Jhilta P, Chauhan A. An overview of fungal chitinases and their potential applications. PROTOPLASMA 2023; 260:1031-1046. [PMID: 36752884 DOI: 10.1007/s00709-023-01839-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Accepted: 01/30/2023] [Indexed: 06/07/2023]
Abstract
Chitin, the world's second most abundant biopolymer after cellulose, is composed of β-1,4-N-acetylglucosamine (GlcNAc) residues. It is the key structural component of many organisms, including crustaceans, mollusks, marine invertebrates, algae, fungi, insects, and nematodes. There has been a significant increase in the generation of chitinous waste from seafood businesses, resulting in a big amount of scrap. Although several organisms, such as plants, crustaceans, insects, nematodes, and animals, produce chitinases, microorganisms are promising candidates and a sustainable option that mediates chitin degradation. Fungi are the dominant group of chitinase producers among microorganisms. In fungi, chitinases are involved in morphogenesis, cell division, autolysis, chitin acquisition for nutritional purposes, and mycoparasitism. Many efficient chitinolytic fungi with potential applications have been identified in a variety of environments, including soil, water, marine wastes, and plants. The current review highlights the key sources of chitinolytic fungi and the characterization of fungal chitinases. It also discusses the applications of fungal chitinases and the cloning of fungal chitinase genes.
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Affiliation(s)
- Deepali Thakur
- Dr. Yashwant Singh Parmar University of Horticulture and Forestry, Nauni, Solan, 173230, Himachal Pradesh, India
| | - Aarti Bairwa
- ICAR-Central Potato Research Institute, Shimla, 171001, Himachal Pradesh, India
| | - Bhawna Dipta
- ICAR-Central Potato Research Institute, Shimla, 171001, Himachal Pradesh, India.
| | - Prakriti Jhilta
- Dr. Yashwant Singh Parmar University of Horticulture and Forestry, Nauni, Solan, 173230, Himachal Pradesh, India
| | - Anjali Chauhan
- Dr. Yashwant Singh Parmar University of Horticulture and Forestry, Nauni, Solan, 173230, Himachal Pradesh, India
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Differential regulation of degradation and immune pathways underlies adaptation of the ectosymbiotic nematode Laxus oneistus to oxic-anoxic interfaces. Sci Rep 2022; 12:9725. [PMID: 35697683 PMCID: PMC9192688 DOI: 10.1038/s41598-022-13235-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Accepted: 05/13/2022] [Indexed: 11/09/2022] Open
Abstract
Eukaryotes may experience oxygen deprivation under both physiological and pathological conditions. Because oxygen shortage leads to a reduction in cellular energy production, all eukaryotes studied so far conserve energy by suppressing their metabolism. However, the molecular physiology of animals that naturally and repeatedly experience anoxia is underexplored. One such animal is the marine nematode Laxus oneistus. It thrives, invariably coated by its sulfur-oxidizing symbiont Candidatus Thiosymbion oneisti, in anoxic sulfidic or hypoxic sand. Here, transcriptomics and proteomics showed that, whether in anoxia or not, L. oneistus mostly expressed genes involved in ubiquitination, energy generation, oxidative stress response, immune response, development, and translation. Importantly, ubiquitination genes were also highly expressed when the nematode was subjected to anoxic sulfidic conditions, together with genes involved in autophagy, detoxification and ribosome biogenesis. We hypothesize that these degradation pathways were induced to recycle damaged cellular components (mitochondria) and misfolded proteins into nutrients. Remarkably, when L. oneistus was subjected to anoxic sulfidic conditions, lectin and mucin genes were also upregulated, potentially to promote the attachment of its thiotrophic symbiont. Furthermore, the nematode appeared to survive oxygen deprivation by using an alternative electron carrier (rhodoquinone) and acceptor (fumarate), to rewire the electron transfer chain. On the other hand, under hypoxia, genes involved in costly processes (e.g., amino acid biosynthesis, development, feeding, mating) were upregulated, together with the worm's Toll-like innate immunity pathway and several immune effectors (e.g., bactericidal/permeability-increasing proteins, fungicides). In conclusion, we hypothesize that, in anoxic sulfidic sand, L. oneistus upregulates degradation processes, rewires the oxidative phosphorylation and reinforces its coat of bacterial sulfur-oxidizers. In upper sand layers, instead, it appears to produce broad-range antimicrobials and to exploit oxygen for biosynthesis and development.
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Li Y, Yang D, Jia Y, He L, Li J, Yu C, Liao C, Yu Z, Zhang C. Effect of infectious bursal disease virus infection on energy metabolism in embryonic chicken livers. Br Poult Sci 2019; 60:729-735. [PMID: 31328539 DOI: 10.1080/00071668.2019.1647586] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
1. The purpose of this study was to investigate ATP levels and the activities of important enzymes involved in glycolysis and TCA cycle in livers of embryonated chicken eggs infected by infectious bursal disease virus (IBDV).2. Embryonated chicken eggs (9 days) were randomly divided into two groups (50 eggs per group). The first group was inoculated with a very virulent IBDV (vvIBDV) isolate into the chorioallantoic membrane. The second group was maintained as uninfected control eggs and inoculated with physiological saline. Embryo survival was assessed daily, and six embryos were sacrificed at 24, 48, 72, 96, and 120 hpi for examining livers. Viral loads in the livers were evaluated by qRT-PCR. A comparative analysis of markers associated with the regulation of energy metabolism across several functional classes (ATP, pyruvic and lactic acids, mitochondrial protein, NAD+/NADH ratios, and enolase, lactic acid dehydrogenase and the respiratory chain complex I activities) were examined in the context of IBDV infection.3. The results indicated that increases in the enzymatic activities associated with glycolytic metabolism in turn affected the synthesis and cytoplasmic concentrations of ATP at early timepoints in infected chicken embryos. Subsequently, energy metabolism was inhibited through the pathological perturbations of metabolic enzymes and mitochondrial damage, as inferred from reduced ATP generation.4. These results suggested impaired bioenergetics, which may lead to liver dysfunction consequent to IBDV infection, contributing to the disease pathogenesis.
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Affiliation(s)
- Y Li
- Luoyang Key Laboratory of Animal Disease Prevention and Control, Animal Science and Technology College, Henan University of Science and Technology, Luoyang, People's Republic of China
| | - D Yang
- Luoyang Key Laboratory of Animal Disease Prevention and Control, Animal Science and Technology College, Henan University of Science and Technology, Luoyang, People's Republic of China
| | - Y Jia
- Luoyang Key Laboratory of Animal Disease Prevention and Control, Animal Science and Technology College, Henan University of Science and Technology, Luoyang, People's Republic of China
| | - L He
- Luoyang Key Laboratory of Animal Disease Prevention and Control, Animal Science and Technology College, Henan University of Science and Technology, Luoyang, People's Republic of China
| | - J Li
- Luoyang Key Laboratory of Animal Disease Prevention and Control, Animal Science and Technology College, Henan University of Science and Technology, Luoyang, People's Republic of China
| | - C Yu
- Luoyang Key Laboratory of Animal Disease Prevention and Control, Animal Science and Technology College, Henan University of Science and Technology, Luoyang, People's Republic of China
| | - C Liao
- Luoyang Key Laboratory of Animal Disease Prevention and Control, Animal Science and Technology College, Henan University of Science and Technology, Luoyang, People's Republic of China
| | - Z Yu
- Luoyang Key Laboratory of Animal Disease Prevention and Control, Animal Science and Technology College, Henan University of Science and Technology, Luoyang, People's Republic of China
| | - C Zhang
- Luoyang Key Laboratory of Animal Disease Prevention and Control, Animal Science and Technology College, Henan University of Science and Technology, Luoyang, People's Republic of China
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Thabet A, Abdel-Baki AAS, Harrath AH, Mansour L. Morphological and molecular aspects of Ceratomyxa ghannouchensis n. sp. and C. pallida Thélohan 1894 infecting the bogue, Boops boops (l.). J NAT HIST 2019. [DOI: 10.1080/00222933.2019.1597202] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Aouatef Thabet
- Laboratoire de Biodiversité, Parasitologie et Ecologie des Écosystèmes Aquatiques, Département de Biologie, Faculté des Sciences de Tunis, Université De Tunis El Manar, Tunis, Tunisia
| | - Abdel-Azeem S. Abdel-Baki
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
- Zoology Department, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt
| | - Abdel Halim Harrath
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Lamjed Mansour
- Laboratoire de Biodiversité, Parasitologie et Ecologie des Écosystèmes Aquatiques, Département de Biologie, Faculté des Sciences de Tunis, Université De Tunis El Manar, Tunis, Tunisia
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
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