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Bourgault R, Molina I. Compositional Analysis of Cutin in Maize Leaves. Cold Spring Harb Protoc 2025; 2025:pdb.prot108434. [PMID: 39134423 DOI: 10.1101/pdb.prot108434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2025]
Abstract
The cuticle is a lipid barrier that covers the air-exposed surfaces of plants. It consists of waxes and cutin, a cell wall-attached lipid polyester of oxygenated fatty acids and glycerol. Unlike waxes, cutin is insoluble in organic solvents, and its composition is typically studied by chemical depolymerization followed by monomer analysis by gas chromatography (GC). Here, we describe a method for the chemical depolymerization of cutin in maize leaves and subsequent compositional analysis of the constituent lipid monomers. The method has been adapted from protocols for cutin analysis developed for Arabidopsis, by both optimizing the amount of leaf tissue used and including a data analysis process specific to the monomers present in maize cutin. The approach uses base-catalyzed transmethylation, which produces fatty acid methyl esters, and silylation, which gives trimethylsilyl ether derivatives of hydroxyl groups for gas chromatographic analysis. For monomer identification, a few representative samples are first analyzed by GC-mass spectrometry (GC-MS). This is then followed by analysis of all replicates by gas chromatography coupled to a flame ionization detector (GC-FID) for monomer quantification, because the flame ionization detector provides a linear response over a wide mass range, is relatively simple to operate, and is more cost-effective to maintain compared to mass spectrometry detectors. Although the protocol bypasses time-consuming cuticle isolation steps by using whole-leaf samples, this means that a fraction of the compounds in the chromatographic profiles do not derive from cutin. Accordingly, we discuss some considerations for the interpretation of the resulting depolymerization products. Our protocol offers specific guidance on preparing maize leaf samples, ensuring reproducible results, and enabling the detection of subtle variations in cutin monomer composition among plant genotypes or developmental stages.
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Affiliation(s)
- Richard Bourgault
- Department of Biology, School of Life Sciences and the Environment, Algoma University, Sault Ste. Marie, Ontario P6A 2G4, Canada
| | - Isabel Molina
- Department of Biology, School of Life Sciences and the Environment, Algoma University, Sault Ste. Marie, Ontario P6A 2G4, Canada
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Chen K, Bhunia RK, Wendt MM, Campidilli G, McNinch C, Hassan A, Li L, Nikolau BJ, Yandeau-Nelson MD. Cuticle development and the underlying transcriptome-metabolome associations during early seedling establishment. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:6500-6522. [PMID: 39031128 PMCID: PMC11522977 DOI: 10.1093/jxb/erae311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Accepted: 07/18/2024] [Indexed: 07/22/2024]
Abstract
The plant cuticle is a complex extracellular lipid barrier that has multiple protective functions. This study investigated cuticle deposition by integrating metabolomics and transcriptomics data gathered from six different maize seedling organs of four genotypes, the inbred lines B73 and Mo17, and their reciprocal hybrids. These datasets captured the developmental transition of the seedling from heterotrophic skotomorphogenic growth to autotrophic photomorphogenic growth, a transition that is highly vulnerable to environmental stresses. Statistical interrogation of these data revealed that the predominant determinant of cuticle composition is seedling organ type, whereas the seedling genotype has a smaller effect on this phenotype. Gene-to-metabolite associations assessed by integrated statistical analyses identified three gene networks associated with the deposition of different elements of the cuticle: cuticular waxes; monomers of lipidized cell wall biopolymers, including cutin and suberin; and both of these elements. These gene networks reveal three metabolic programs that appear to support cuticle deposition, including processes of chloroplast biogenesis, lipid metabolism, and molecular regulation (e.g. transcription factors, post-translational regulators, and phytohormones). This study demonstrates the wider physiological metabolic context that can determine cuticle deposition and lays the groundwork for new targets for modulating the properties of this protective barrier.
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Affiliation(s)
- Keting Chen
- Department of Genetics, Development & Cell Biology, Iowa State University, Ames, IA, USA
- Bioinformatics & Computational Biology Graduate Program, Iowa State University, Ames, IA, USA
| | - Rupam Kumar Bhunia
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA, USA
| | - Matthew M Wendt
- Department of Genetics, Development & Cell Biology, Iowa State University, Ames, IA, USA
- Interdepartmental Genetics and Genomics Graduate Program, Iowa State University, Ames, IA, USA
| | - Grace Campidilli
- Department of Genetics, Development & Cell Biology, Iowa State University, Ames, IA, USA
- Undergraduate Genetics Major, Iowa State University, Ames, IA, USA
| | - Colton McNinch
- Molecular, Cellular, and Developmental Biology Graduate Program, Iowa State University, Ames, IA, USA
| | - Ahmed Hassan
- Department of Genetics, Development & Cell Biology, Iowa State University, Ames, IA, USA
- Undergraduate Data Science Major, Iowa State University, Ames, IA, USA
| | - Ling Li
- Department of Biological Sciences, Mississippi State University, Mississippi State, MS, USA
| | - Basil J Nikolau
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA, USA
- Interdepartmental Genetics and Genomics Graduate Program, Iowa State University, Ames, IA, USA
- Molecular, Cellular, and Developmental Biology Graduate Program, Iowa State University, Ames, IA, USA
- Center for Metabolic Biology, Iowa State University, Ames, IA, USA
| | - Marna D Yandeau-Nelson
- Department of Genetics, Development & Cell Biology, Iowa State University, Ames, IA, USA
- Bioinformatics & Computational Biology Graduate Program, Iowa State University, Ames, IA, USA
- Interdepartmental Genetics and Genomics Graduate Program, Iowa State University, Ames, IA, USA
- Molecular, Cellular, and Developmental Biology Graduate Program, Iowa State University, Ames, IA, USA
- Center for Metabolic Biology, Iowa State University, Ames, IA, USA
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Valorization of Agro-Industrial Wastes by Ultrasound-Assisted Extraction as a Source of Proteins, Antioxidants and Cutin: A Cascade Approach. Antioxidants (Basel) 2022; 11:antiox11091739. [PMID: 36139813 PMCID: PMC9495669 DOI: 10.3390/antiox11091739] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Revised: 08/19/2022] [Accepted: 08/28/2022] [Indexed: 11/30/2022] Open
Abstract
The use of agro-industrial wastes to obtain compounds with a high added-value is increasing in the last few years in accordance with the circular economy concept. In this work, a cascade extraction approach was developed based on ultrasound-assisted extraction (UAE) for tomato, watermelon, and apple peel wastes. The protein and antioxidant compounds were obtained during the first extraction step (NaOH 3 wt.%, 98.6 W, 100% amplitude, 6.48 W/cm2, 6 min). The watermelon peels (WP) showed higher proteins and total phenolic contents (857 ± 1 mg BSA/g extract and 107.2 ± 0.2 mg GAE/100 g dm, respectively), whereas the highest antioxidant activity was obtained for apple peels (1559 ± 20 µmol TE/100 g dm, 1767 ± 5 µmol TE/100 g dm, and 902 ± 16 µmol TE/100 g dm for ABTS, FRAP and DPPH assays, respectively). The remaining residue obtained from the first extraction was subsequently extracted to obtain cutin (ethanol 40 wt.%, 58 W, 100% amplitude, 2 W/cm2, 17 min, 1/80 g/mL, pH 2.5). The morphological studies confirmed the great efficiency of UAE in damaging the vegetal cell walls. WP showed a higher non-hydrolysable cutin content (55 wt.% of the initial cutin). A different monomers’ profile was obtained for the cutin composition by GC-MS, with the cutin from tomato and apple peels being rich in polyhydroxy fatty acids whereas the cutin extracted from WP was mainly based on unsaturated fatty acids. All of the cutin samples showed an initial degradation temperature higher than 200 °C, presenting an excellent thermal stability. The strategy followed in this work has proved to be an effective valorization methodology with a high scaling-up potential for applications in the food, pharmaceutical, nutraceutical, cosmetics and biopolymer sectors.
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Rontani JF, Aubert C. Electron ionization mass fragmentation of monounsaturated long-chain α,ω-dicarboxylic acid trimethylsilyl derivatives. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2022; 36:e9321. [PMID: 35485611 DOI: 10.1002/rcm.9321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 04/28/2022] [Accepted: 04/28/2022] [Indexed: 06/14/2023]
Affiliation(s)
| | - Claude Aubert
- Laboratoire de Pharmacocinétique et Toxicocinétique (EA 3286), Faculté de Pharmacie, Marseille, France
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Pollard M, Shachar-Hill Y. Kinetic complexities of triacylglycerol accumulation in developing embryos from Camelina sativa provide evidence for multiple biosynthetic systems. J Biol Chem 2022; 298:101396. [PMID: 34774796 PMCID: PMC8715117 DOI: 10.1016/j.jbc.2021.101396] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Revised: 10/28/2021] [Accepted: 11/05/2021] [Indexed: 11/19/2022] Open
Abstract
Quantitative flux maps describing glycerolipid synthesis can be important tools for rational engineering of lipid content and composition in oilseeds. Lipid accumulation in cultured embryos of Camelina sativa is known to mimic that of seeds in terms of rate of lipid synthesis and composition. To assess the kinetic complexity of the glycerolipid flux network, cultured embryos were incubated with [14C/13C]glycerol, and initial and steady state rates of [14C/13Cglyceryl] lipid accumulation were measured. At steady state, the linear accumulations of labeled lipid classes matched those expected from mass compositions. The system showed an apparently simple kinetic precursor-product relationship between the intermediate pool, dominated by diacylglycerol (DAG) and phosphatidylcholine (PC), and the triacylglycerol (TAG) product. We also conducted isotopomer analyses on hydrogenated lipid class species. [13C3glyceryl] labeling of DAG and PC, together with estimates of endogenous [12C3glyceryl] dilution, showed that each biosynthetically active lipid pool is ∼30% of the total by moles. This validates the concept that lipid sub-pools can describe lipid biosynthetic networks. By tracking the kinetics of [13C3glyceryl] and [13C2acyl] labeling, we observed two distinct TAG synthesis components. The major TAG synthesis flux (∼75%) was associated with >95% of the DAG/PC intermediate pool, with little glycerol being metabolized to fatty acids, and with little dilution from endogenous glycerol; a smaller flux exhibited converse characteristics. This kinetic heterogeneity was further explored using postlabeling embryo dissection and differential lipid extractions. The minor flux was tentatively localized to surface cells across the whole embryo. Such heterogeneity must be recognized in order to construct accurate gene expression patterns and metabolic networks describing lipid biosynthesis in developing embryos.
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Affiliation(s)
- Mike Pollard
- Department of Plant Biology, Michigan State University, East Lansing, Michigan, USA
| | - Yair Shachar-Hill
- Department of Plant Biology, Michigan State University, East Lansing, Michigan, USA.
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Fernández-Galleguillos C, Quesada-Romero L, Puerta A, Padrón JM, Souza E, Romero-Parra J, Simirgiotis MJ. UHPLC-MS Chemical Fingerprinting and Antioxidant, Antiproliferative, and Enzyme Inhibition Potential of Gaultheria pumila Berries. Metabolites 2021; 11:metabo11080523. [PMID: 34436464 PMCID: PMC8401902 DOI: 10.3390/metabo11080523] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 07/30/2021] [Accepted: 08/03/2021] [Indexed: 11/24/2022] Open
Abstract
Gaultheria pumila (Ericaceae) (known as Chaura or Mutilla) is a Chilean native small shrub that produces berry fruits consumed by local Mapuche people. In this study, the chemical fingerprinting and antioxidant, enzyme inhibition, and antiproliferative activities of the berries were investigated for the first time. Thirty-six metabolites were identified in the fruits by ultra-high performance liquid chromatography-photodiode array detection, hyphenated with Orbitrap mass spectrometry analysis (UHPLC-DAD-Orbitrap-MS). Metabolites, included anthocyanins, phenolic acids, flavonoids, iridoids, diterpenes, and fatty acids. Moderate inhibitory activities against acetylcholinesterase (7.7 ± 0.3 µg/mL), butyrylcholinesterase (34.5 ± 0.5 µg/mL), and tyrosinase (3.3 ± 0.2 µg/mL) enzymes were found. Moreover, selected major compounds were subjected to docking assays in light of their experimental inhibition. Results indicated that hydrogen bonding, π–π interaction, and a salt bridge interaction contributed significantly. Gaultheria pumila berries showed a total phenolic content of 189.2 ± 0.2 mg of gallic acid equivalents/g, total flavonoid content of 51.8 ± 0.1 mg quercetin equivalents/g, and total anthocyanin content of 47.3 ± 0.2 mg of cianydin-3-glucoside equivalents/g. Antioxidant activity was assessed using DPPH (92.8 ± 0.1 µg/mL), FRAP (134.1 ± 0.1 μmol Trolox equivalents/g), and ORAC (4251.6 ± 16.9 μmol Trolox equivalents/g) assays. Conversely, Gaultheria pumila showed a scarce antiproliferative potential against several solid human cancer cells. Our findings suggest that Gaultheria pumila berries have several bioactive metabolites with inhibitory effects against acetylcholinesterase, butyrylcholinesterase, and tyrosinase, and have the potential for use in food supplements.
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Affiliation(s)
- Carlos Fernández-Galleguillos
- Instituto de Farmacia, Facultad de Ciencias, Universidad Austral de Chile, Campus Isla Teja, Valdivia 5090000, Chile;
| | - Luisa Quesada-Romero
- Facultad de Ciencias Para el Cuidado de la Salud, Universidad San Sebastián, Valdivia 5090000, Chile
- Correspondence: (L.Q.-R.); (M.J.S.); Tel.: +56-632632811 (L.Q.-R.)
| | - Adrián Puerta
- BioLab, Instituto Universitario de Bio-Orgánica Antonio González (IUBO-AG), Universidad de La Laguna, 38206 La Laguna, Spain; (A.P.); (J.M.P.)
| | - José M. Padrón
- BioLab, Instituto Universitario de Bio-Orgánica Antonio González (IUBO-AG), Universidad de La Laguna, 38206 La Laguna, Spain; (A.P.); (J.M.P.)
| | - Ernane Souza
- The Lloyd L. Gregory School of Pharmacy, Palm Beach Atlantic University, West Palm Beach, FL 33401, USA;
| | - Javier Romero-Parra
- Departamento de Química Orgánica y Fisicoquímica, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile, Olivos 1007, Casilla 233, Santiago 6640022, Chile;
| | - Mario J. Simirgiotis
- Instituto de Farmacia, Facultad de Ciencias, Universidad Austral de Chile, Campus Isla Teja, Valdivia 5090000, Chile;
- Center for Interdisciplinary Studies on the Nervous System (CISNe), Universidad Austral de Chile, Valdivia 5090000, Chile
- Correspondence: (L.Q.-R.); (M.J.S.); Tel.: +56-632632811 (L.Q.-R.)
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Reynoud N, Petit J, Bres C, Lahaye M, Rothan C, Marion D, Bakan B. The Complex Architecture of Plant Cuticles and Its Relation to Multiple Biological Functions. FRONTIERS IN PLANT SCIENCE 2021; 12:782773. [PMID: 34956280 PMCID: PMC8702516 DOI: 10.3389/fpls.2021.782773] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Accepted: 11/18/2021] [Indexed: 05/20/2023]
Abstract
Terrestrialization of vascular plants, i.e., Angiosperm, is associated with the development of cuticular barriers that prevent biotic and abiotic stresses and support plant growth and development. To fulfill these multiple functions, cuticles have developed a unique supramolecular and dynamic assembly of molecules and macromolecules. Plant cuticles are not only an assembly of lipid compounds, i.e., waxes and cutin polyester, as generally presented in the literature, but also of polysaccharides and phenolic compounds, each fulfilling a role dependent on the presence of the others. This mini-review is focused on recent developments and hypotheses on cuticle architecture-function relationships through the prism of non-lipid components, i.e., cuticle-embedded polysaccharides and polyester-bound phenolics.
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Affiliation(s)
- Nicolas Reynoud
- INRAE, Unité Biopolymères, Interactions, Assemblages, Nantes, France
| | - Johann Petit
- INRAE, University of Bordeaux, UMR BFP, Villenave d’Ornon, France
| | - Cécile Bres
- INRAE, University of Bordeaux, UMR BFP, Villenave d’Ornon, France
| | - Marc Lahaye
- INRAE, Unité Biopolymères, Interactions, Assemblages, Nantes, France
| | | | - Didier Marion
- INRAE, Unité Biopolymères, Interactions, Assemblages, Nantes, France
| | - Bénédicte Bakan
- INRAE, Unité Biopolymères, Interactions, Assemblages, Nantes, France
- *Correspondence: Bénédicte Bakan,
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